ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13i13 |
|---|---|
| Clone Library Name | barley_pub |
>COPD_ORYSA (P49661) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 518 Score = 340 bits (873), Expect = 2e-93 Identities = 162/186 (87%), Positives = 176/186 (94%) Frame = -1 Query: 694 FKTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVS 515 FKTHPNI+KELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQ +NES+LPL+VNCWPSVS Sbjct: 333 FKTHPNINKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQELNESSLPLAVNCWPSVS 392 Query: 514 GNETYVNIEYEASEMFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILID 335 GNETYVNIEYEASEMFDL+NVVISIPLPALREAP V+QIDGEW+YDSRNSVLEWSIIL+D Sbjct: 393 GNETYVNIEYEASEMFDLHNVVISIPLPALREAPGVRQIDGEWRYDSRNSVLEWSIILVD 452 Query: 334 QSNRSGSMEFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVA 155 QSNRSGS+EF VP ADPSTFFPIS+GF ASNTFSDLKVT I PL+EG+PPK+SQR RLV Sbjct: 453 QSNRSGSLEFTVPAADPSTFFPISVGFSASNTFSDLKVTAIRPLREGSPPKFSQRNRLVT 512 Query: 154 ANYQIV 137 NYQ+V Sbjct: 513 YNYQVV 518
>COPD_RAT (Q66H80) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 164 bits (416), Expect = 2e-40 Identities = 76/186 (40%), Positives = 124/186 (66%), Gaps = 1/186 (0%) Frame = -1 Query: 691 KTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSG 512 +THPN+ K+LF ++ ++G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SG Sbjct: 328 QTHPNVDKKLFTAESLIGLKNPEKSFPVN-SDVGVLKWRLQTTEESFIPLTINCWPSESG 386 Query: 511 NETYVNIEYEASE-MFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILID 335 N VNIEYE E +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID Sbjct: 387 NGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVID 446 Query: 334 QSNRSGSMEFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVA 155 N+SGS+EF + P P+ FFP+ + F + + +++VT + + +P ++S + Sbjct: 447 AKNKSGSLEFSI-PGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLV 505 Query: 154 ANYQIV 137 Y+I+ Sbjct: 506 DKYEIL 511
>COPD_MOUSE (Q5XJY5) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 164 bits (416), Expect = 2e-40 Identities = 76/186 (40%), Positives = 124/186 (66%), Gaps = 1/186 (0%) Frame = -1 Query: 691 KTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSG 512 +THPN+ K+LF ++ ++G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SG Sbjct: 328 QTHPNVDKKLFTAESLIGLKNPEKSFPVN-SDVGVLKWRLQTTEESFIPLTINCWPSESG 386 Query: 511 NETYVNIEYEASE-MFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILID 335 N VNIEYE E +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID Sbjct: 387 NGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVID 446 Query: 334 QSNRSGSMEFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVA 155 N+SGS+EF + P P+ FFP+ + F + + +++VT + + +P ++S + Sbjct: 447 AKNKSGSLEFSI-PGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLV 505 Query: 154 ANYQIV 137 Y+I+ Sbjct: 506 DKYEIL 511
>COPD_PONPY (Q5RA77) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 162 bits (409), Expect = 1e-39 Identities = 75/186 (40%), Positives = 123/186 (66%), Gaps = 1/186 (0%) Frame = -1 Query: 691 KTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSG 512 +THPN+ K+LF ++ ++G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SG Sbjct: 328 QTHPNVDKKLFTAESLIGLKNPEKSFPVN-SDVGVLKWRLQTTEESFIPLTINCWPSESG 386 Query: 511 NETYVNIEYEASE-MFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILID 335 N VNIEYE E +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID Sbjct: 387 NGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVID 446 Query: 334 QSNRSGSMEFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVA 155 N+SGS+EF + P+ FFP+ + F + + +++VT + + +P ++S + Sbjct: 447 AKNKSGSLEFSI-AGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLV 505 Query: 154 ANYQIV 137 Y+I+ Sbjct: 506 DKYEIL 511
>COPD_HUMAN (P48444) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 162 bits (409), Expect = 1e-39 Identities = 75/186 (40%), Positives = 123/186 (66%), Gaps = 1/186 (0%) Frame = -1 Query: 691 KTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSG 512 +THPN+ K+LF ++ ++G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SG Sbjct: 328 QTHPNVDKKLFTAESLIGLKNPEKSFPVN-SDVGVLKWRLQTTEESFIPLTINCWPSESG 386 Query: 511 NETYVNIEYEASE-MFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILID 335 N VNIEYE E +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID Sbjct: 387 NGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVID 446 Query: 334 QSNRSGSMEFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVA 155 N+SGS+EF + P+ FFP+ + F + + +++VT + + +P ++S + Sbjct: 447 AKNKSGSLEFSI-AGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLV 505 Query: 154 ANYQIV 137 Y+I+ Sbjct: 506 DKYEIL 511
>COPD_BOVIN (P53619) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 511 Score = 161 bits (408), Expect = 2e-39 Identities = 75/186 (40%), Positives = 123/186 (66%), Gaps = 1/186 (0%) Frame = -1 Query: 691 KTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSG 512 +THPN+ K+LF ++ ++G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SG Sbjct: 328 QTHPNVDKKLFTAESLIGLKNPEKSFPVN-SDVGVLKWRLQTTEESFIPLTINCWPSESG 386 Query: 511 NETYVNIEYEASE-MFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILID 335 N VNIEYE E +LN+VVI+IPLP+ AP + +IDGE+++DSR + LEW + +ID Sbjct: 387 NGCDVNIEYELQEDNLELNDVVITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVID 446 Query: 334 QSNRSGSMEFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVA 155 N+SGS+EF + P+ FFP+ + F + + +++VT + + +P ++S + Sbjct: 447 AKNKSGSLEFSI-AGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLV 505 Query: 154 ANYQIV 137 Y+I+ Sbjct: 506 DKYEIL 511
>COPD_CHICK (Q5ZL57) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| (Archain) Length = 510 Score = 160 bits (405), Expect = 3e-39 Identities = 75/186 (40%), Positives = 122/186 (65%), Gaps = 1/186 (0%) Frame = -1 Query: 691 KTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSG 512 +THPN+ K+LF ++ +G K+P + FP ++ ++KWR+Q ES +PL++NCWPS SG Sbjct: 327 QTHPNVDKKLFTAESQIGLKNPEKSFPIN-SDVGVLKWRLQTTEESFIPLTINCWPSESG 385 Query: 511 NETYVNIEYEASE-MFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILID 335 N VNIEYE E +LN+VVI IPLP+ AP + +IDGE+++DSR ++LEW + +ID Sbjct: 386 NSCDVNIEYELQEESLELNDVVIMIPLPSGVGAPVIGEIDGEYRHDSRRNLLEWCLPVID 445 Query: 334 QSNRSGSMEFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVA 155 N+SGS+EF + P+ FFP+ + F + + +++VT + + +P ++S + Sbjct: 446 AKNKSGSLEFSI-AGQPNDFFPVQVSFISKKNYCNIQVTKVTQVDGNSPVRFSTETTFLV 504 Query: 154 ANYQIV 137 Y+I+ Sbjct: 505 DKYEIL 510
>COPD_CAEEL (Q09236) Probable coatomer subunit delta (Delta-coat protein)| (Delta-COP) Length = 515 Score = 129 bits (325), Expect = 6e-30 Identities = 69/186 (37%), Positives = 105/186 (56%), Gaps = 1/186 (0%) Frame = -1 Query: 691 KTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWPSVSG 512 + HPN+ K+ + S + K +P+P ++ ++KW++ E LP+S NCWP S Sbjct: 333 QVHPNLDKKEWQSSSTLKIKPNGKPYPVN-SDVGILKWKMALSEEEQLPISFNCWPQESS 391 Query: 511 NETYVNIEYEAS-EMFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILID 335 + VNIEY E LNNV I +PLP AP+V + DGE++Y +V+ WS+ +ID Sbjct: 392 DGVQVNIEYTLQREDITLNNVRIIVPLPTAT-APSVGECDGEYEYHKTKNVIVWSLAVID 450 Query: 334 QSNRSGSMEFIVPPADPSTFFPISIGFGASNTFSDLKVTGIHPLKEGNPPKYSQRVRLVA 155 SN SG++EF VP FFP+S+GF + N F + V + +G+P YS + Sbjct: 451 SSNSSGTLEFSVPNGHCDHFFPVSVGFTSENLFVPITVQKV-VKNDGSPVTYSVETTFNS 509 Query: 154 ANYQIV 137 N++IV Sbjct: 510 ENFEIV 515
>COPD_YEAST (P43621) Coatomer subunit delta (Delta-coat protein) (Delta-COP)| Length = 545 Score = 57.8 bits (138), Expect = 3e-08 Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 4/91 (4%) Frame = -1 Query: 694 FKTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWR--IQGMNESNLPLSVNCW-- 527 FKTHPNI K+ F S +++ +D ++ FP+ +++WR ++S +PL++ W Sbjct: 346 FKTHPNIDKQSFLSTKLISLRDKSKAFPANDQSLGVLRWRKVAPAEDDSLIPLTLTTWVS 405 Query: 526 PSVSGNETYVNIEYEASEMFDLNNVVISIPL 434 PS S V IEYE+ +L +V+ +IP+ Sbjct: 406 PSESQQGFDVIIEYESVLETELADVIFTIPV 436
>BCSA2_ACEXY (O82859) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 756 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Frame = -1 Query: 559 ESNLPLSVNCWPSVSGNETYVNIEYEASEMFDLNNVVISIPLPALREAPTVKQI----DG 392 E+++P++V P+ TY N + ++ + V + IPLP + P K+I DG Sbjct: 584 EAHIPVTVYDAPAEGQPHTYYNATHGMTQDVSMGGVAVHIPLPDVTTGPVKKRIHAVLDG 643 Query: 391 E 389 E Sbjct: 644 E 644
>YDHK_SALTY (Q8ZPN4) Hypothetical transport protein ydhK| Length = 679 Score = 32.3 bits (72), Expect = 1.4 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -1 Query: 448 ISIPLPALREAPTVKQIDGEWKYDSRNSV 362 + + LPALR P K G+W+Y RN++ Sbjct: 1 MKLSLPALRNTPWFKATSGQWRYALRNTI 29
>YDHK_SALTI (Q8Z6P7) Hypothetical transport protein ydhK| Length = 679 Score = 32.3 bits (72), Expect = 1.4 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -1 Query: 448 ISIPLPALREAPTVKQIDGEWKYDSRNSV 362 + + LPALR P K G+W+Y RN++ Sbjct: 1 MKLSLPALRNTPWFKATSGQWRYALRNTI 29
>AP1M1_HUMAN (Q9BXS5) AP-1 complex subunit mu-1 (Adaptor-related protein complex| 1 mu-1 subunit) (Mu-adaptin 1) (Adaptor protein complex AP-1 mu-1 subunit) (Golgi adaptor HA1/AP1 adaptin mu-1 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 422 Score = 32.3 bits (72), Expect = 1.4 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Frame = -1 Query: 523 SVSGNETYVNIEY--EASEMFD----LNNVVISIPLPALREAPTVKQIDGEWKYDSRNSV 362 SV ++ IEY +A F NNV I IP+P ++P K G K+ NS Sbjct: 280 SVIEKHSHSRIEYMIKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSE 339 Query: 361 LEWSI 347 + WSI Sbjct: 340 IVWSI 344
>AP1M_CAEEL (P35602) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47) (Clathrin coat-associated protein AP47) (Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit) (Clathrin assembly protein assembly protein complex 1 medium chain) (Uncoor Length = 422 Score = 32.0 bits (71), Expect = 1.8 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -1 Query: 460 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSIILIDQSNRSGSMEFIV 299 NNV I IP+P+ ++P K G KY S W+I N G E+++ Sbjct: 307 NNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTI-----KNFPGGKEYLL 355
>AP1M1_MOUSE (P35585) AP-1 complex subunit mu-1 (Adaptor-related protein complex| 1 mu-1 subunit) (Mu-adaptin 1) (Adaptor protein complex AP-1 mu-1 subunit) (Golgi adaptor HA1/AP1 adaptin mu-1 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 422 Score = 32.0 bits (71), Expect = 1.8 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Frame = -1 Query: 523 SVSGNETYVNIEY--EASEMFD----LNNVVISIPLPALREAPTVKQIDGEWKYDSRNSV 362 SV ++ IEY +A F NNV I IP+P ++P K G K+ NS Sbjct: 280 SVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSE 339 Query: 361 LEWSI 347 + WS+ Sbjct: 340 IVWSV 344
>AP1M2_MOUSE (Q9WVP1) AP-1 complex subunit mu-2 (Adaptor-related protein complex| 1 mu-2 subunit) (Mu-adaptin 2) (Adaptor protein complex AP-1 mu-2 subunit) (Golgi adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 423 Score = 31.6 bits (70), Expect = 2.4 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -1 Query: 460 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 347 N V IS+P+P+ ++P K G KY +V+ WSI Sbjct: 308 NGVEISVPVPSDADSPRFKTSVGSAKYVPEKNVVIWSI 345
>AP1M2_HUMAN (Q9Y6Q5) AP-1 complex subunit mu-2 (Adaptor-related protein complex| 1 mu-2 subunit) (Mu-adaptin 2) (Adaptor protein complex AP-1 mu-2 subunit) (Golgi adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 423 Score = 31.6 bits (70), Expect = 2.4 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -1 Query: 460 NNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 347 N V IS+P+P+ ++P K G KY +V+ WSI Sbjct: 308 NGVEISVPVPSDADSPRFKTSVGSAKYVPERNVVIWSI 345
>C93A1_SOYBN (Q42798) Cytochrome P450 93A1 (EC 1.14.-.-)| Length = 509 Score = 31.6 bits (70), Expect = 2.4 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Frame = -1 Query: 619 PFPSGQNETP--LVKWRIQGMNESNLPLSVNC--WPSVSGNETYVNIEYEASEMFDLNNV 452 PF SG+ P + W++ +N L + + C W V GN V++E ++ N Sbjct: 439 PFGSGRRTCPGASLAWQVVPVN---LAIIIQCFQWKLVGGNGK-VDMEEKSGITLPRANP 494 Query: 451 VISIPLPALREAPTV 407 +I +P+P + PT+ Sbjct: 495 IICVPVPRINPFPTI 509
>AP1M1_YEAST (Q00776) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (Clathrin| assembly protein complex 1 medium chain) (Clathrin coat assembly protein AP54) (Clathrin coat-associated protein AP54) (Golgi adaptor AP-1 54 kDa protein) (HA1 54 kDa subunit) Length = 475 Score = 30.4 bits (67), Expect = 5.3 Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 1/116 (0%) Frame = -1 Query: 691 KTHPNIHKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQGMNESNLPLSVNCWP-SVS 515 K H + F +++I+ P+ F L+ +R+ + + VN S S Sbjct: 276 KFHQCVRLSKFENEKIITFIPPDGKFD-------LMNYRLSTTIKPLIWCDVNVQVHSNS 328 Query: 514 GNETYVNIEYEASEMFDLNNVVISIPLPALREAPTVKQIDGEWKYDSRNSVLEWSI 347 E + + + NV I IP+P + PT K G KY S + W I Sbjct: 329 RIEIHCKAKAQIKRKSTATNVEILIPVPDDADTPTFKYSHGSLKYVPEKSAILWKI 384
>SRP72_SCHPO (O59787) Signal recognition particle 72 kDa protein homolog (SRP72)| Length = 561 Score = 29.6 bits (65), Expect = 9.1 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = -2 Query: 483 RPQRCLT*TMLSYQFLCLHFGRLQPLNRLMESGSMTLETLYWNGPLSLLIS 331 + Q C +L + L H P++ + + S+ + L W GP+S L+S Sbjct: 401 KQQSCEAKLLLCTRSLLAHLDERAPVSTIQDDMSVIDDLLQWKGPISELVS 451 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,468,750 Number of Sequences: 219361 Number of extensions: 2368956 Number of successful extensions: 5600 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5432 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5584 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
