ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13i09 |
|---|---|
| Clone Library Name | barley_pub |
>Y5195_ARATH (Q84MC2) Lysine decarboxylase-like protein At5g11950| Length = 216 Score = 205 bits (522), Expect = 8e-53 Identities = 97/142 (68%), Positives = 118/142 (83%) Frame = -3 Query: 647 HDGGRHVIGVIPKTLMTPEISGETVGEVRAVADMHQRKAEMARHSDAFIALPGGYGTLEE 468 ++GG HV+G+IPK LM EISGETVG+VR VADMH+RKA MA+ ++AFIALPGGYGT+EE Sbjct: 62 YEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEE 121 Query: 467 LLEVITWAQLGIHHKPVGLLNVDGYYNSLLTFIDKAVEEGFINTSARRIIVLAPTAEELM 288 LLE+ITW+QLGIH K VGLLNVDGYYN+LL D VEEGFI AR I+V APTA+ELM Sbjct: 122 LLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELM 181 Query: 287 EKLEDYVPYHDRVASNLNWEIE 222 EK+E+Y P H VAS+ +W++E Sbjct: 182 EKMEEYTPSHMHVASHESWKVE 203
>YJF5_YEAST (P47044) Hypothetical 26.9 kDa protein in BTN1-PEP8 intergenic| region Length = 245 Score = 126 bits (316), Expect = 6e-29 Identities = 61/120 (50%), Positives = 82/120 (68%) Frame = -3 Query: 581 ETVGEVRAVADMHQRKAEMARHSDAFIALPGGYGTLEELLEVITWAQLGIHHKPVGLLNV 402 E GE V DMH RK MA SDAF+A+PGGYGT EE++E ITW+QLGIH+KP+ L N+ Sbjct: 119 EEYGETTIVPDMHTRKRMMANLSDAFVAMPGGYGTFEEIMECITWSQLGIHNKPIILFNI 178 Query: 401 DGYYNSLLTFIDKAVEEGFINTSARRIIVLAPTAEELMEKLEDYVPYHDRVASNLNWEIE 222 DG+Y+ LL F+ +++E FI+ II +A T +E+++K+E YV R NLNW E Sbjct: 179 DGFYDKLLEFLKHSIQERFISVKNGEIIQVASTPQEVVDKIEKYVVPEGRF--NLNWSDE 236
>Y4923_PSEAE (P48636) Hypothetical protein PA4923| Length = 195 Score = 121 bits (304), Expect = 2e-27 Identities = 61/125 (48%), Positives = 81/125 (64%) Frame = -3 Query: 638 GRHVIGVIPKTLMTPEISGETVGEVRAVADMHQRKAEMARHSDAFIALPGGYGTLEELLE 459 G VIG+IP++L EI + + + V MH RKA MA +DAFIALPGG GTLEEL E Sbjct: 59 GGEVIGIIPQSLQEAEIGHKGLTRLEVVDGMHARKARMAELADAFIALPGGLGTLEELFE 118 Query: 458 VITWAQLGIHHKPVGLLNVDGYYNSLLTFIDKAVEEGFINTSARRIIVLAPTAEELMEKL 279 V TW QLG H KP+GLL V+G+Y+ LLTF+D V+E F+ R ++ + E L++ L Sbjct: 119 VWTWGQLGYHAKPLGLLEVNGFYDPLLTFLDHLVDERFVRAEHRGMLQRGASPEALLDAL 178 Query: 278 EDYVP 264 + P Sbjct: 179 AAWTP 183
>FAS6_RHOFA (P46378) Hypothetical 21.1 kDa protein in fasciation locus (ORF6)| Length = 198 Score = 111 bits (277), Expect = 2e-24 Identities = 57/117 (48%), Positives = 75/117 (64%), Gaps = 1/117 (0%) Frame = -3 Query: 644 DGGRHVIGVIPKTLMT-PEISGETVGEVRAVADMHQRKAEMARHSDAFIALPGGYGTLEE 468 D G V+GVIP++ PE + + E+ V DMHQRKA MA DAFIALPGG GT EE Sbjct: 73 DSGGTVVGVIPESFTAIPEAAHHGLTELHVVHDMHQRKALMAELGDAFIALPGGVGTAEE 132 Query: 467 LLEVITWAQLGIHHKPVGLLNVDGYYNSLLTFIDKAVEEGFINTSARRIIVLAPTAE 297 EV+TW+ LG+H+KP LLN + YY LL++I+ A EGFI + R +++ E Sbjct: 133 FFEVLTWSHLGLHNKPCVLLNDNEYYRPLLSYIEHAAVEGFITPATRSRVIVCKDIE 189
>YGDH_SHIFL (P0ADS1) Hypothetical protein ygdH| Length = 454 Score = 34.3 bits (77), Expect = 0.33 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -3 Query: 626 IGVIPKTLMTPEISGETVGEVRAVADMHQRKAEMARHSDAFIALPGGYGTLEELLEVI 453 IG+ +++ E V E+ + D+ +R R + I PGG GT EELL ++ Sbjct: 212 IGMTEPSIIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLL 269
>YGDH_ECOLI (P0ADR8) Hypothetical protein ygdH| Length = 454 Score = 34.3 bits (77), Expect = 0.33 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -3 Query: 626 IGVIPKTLMTPEISGETVGEVRAVADMHQRKAEMARHSDAFIALPGGYGTLEELLEVI 453 IG+ +++ E V E+ + D+ +R R + I PGG GT EELL ++ Sbjct: 212 IGMTEPSIIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLL 269
>YGDH_ECOL6 (P0ADR9) Hypothetical protein ygdH| Length = 454 Score = 34.3 bits (77), Expect = 0.33 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -3 Query: 626 IGVIPKTLMTPEISGETVGEVRAVADMHQRKAEMARHSDAFIALPGGYGTLEELLEVI 453 IG+ +++ E V E+ + D+ +R R + I PGG GT EELL ++ Sbjct: 212 IGMTEPSIIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLL 269
>YGDH_ECO57 (P0ADS0) Hypothetical protein ygdH| Length = 454 Score = 34.3 bits (77), Expect = 0.33 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -3 Query: 626 IGVIPKTLMTPEISGETVGEVRAVADMHQRKAEMARHSDAFIALPGGYGTLEELLEVI 453 IG+ +++ E V E+ + D+ +R R + I PGG GT EELL ++ Sbjct: 212 IGMTEPSIIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLL 269
>WDR67_XENLA (Q6DDI6) WD-repeat protein 67| Length = 1089 Score = 31.2 bits (69), Expect = 2.8 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Frame = -3 Query: 473 EELLEVIT-WAQLGIHHKPVGLLNVDGYYNSLLTFIDKAVEEGFINTSARRIIVLAPTAE 297 E + VIT W Q + P +N+ G +LL DK + + FIN + P E Sbjct: 525 EVVATVITNWCQHWFEYFPNPPINILGMVENLLAHHDKELLQHFINHGVNSQVYAWPILE 584 Query: 296 ELMEKL---EDYVPYHDRVASN 240 L ++ E+++ D V SN Sbjct: 585 TLFSEVLTREEWLRLFDNVFSN 606
>SYL_BORBU (O51267) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 840 Score = 30.8 bits (68), Expect = 3.6 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Frame = -3 Query: 410 LNVDGYYNSLLTFIDKAV--EEGFINTSARRIIVLAPTAEELMEKLEDYVPYHDRVASNL 237 LN + ++++ FI++ + E+ ++N II+L+P A L E+L +Y+ + N Sbjct: 706 LNFNTAISAMMIFINELLKYEKNYLNIFKPFIIILSPYAPHLAEELWEYIGELPSLFKNS 765 Query: 236 NW 231 W Sbjct: 766 KW 767
>WDR67_XENTR (Q6DEY8) WD-repeat protein 67| Length = 1088 Score = 30.8 bits (68), Expect = 3.6 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Frame = -3 Query: 473 EELLEVIT-WAQLGIHHKPVGLLNVDGYYNSLLTFIDKAVEEGFINTSARRIIVLAPTAE 297 E + VIT W Q + P +N+ G +LL DK + + FIN + P E Sbjct: 525 EVVATVITNWCQHWFEYFPNPPINILGMVENLLAHHDKELLQHFINYGVTSQVYAWPLLE 584 Query: 296 ELMEKL---EDYVPYHDRVASN 240 L ++ E+++ D V SN Sbjct: 585 TLFSEVLTREEWLRLFDNVFSN 606
>FMT_BURPS (Q63YR6) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 327 Score = 30.4 bits (67), Expect = 4.7 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -3 Query: 581 ETVGEVRAVADMHQRKAEMARHSDAFIALPGGYGTLE 471 E +G+ A D + A +AR AF PGG GTL+ Sbjct: 215 EKIGKHEAALDWRKPAAALARQVRAFDPFPGGAGTLD 251
>FMT_BURMA (Q62MT4) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 327 Score = 30.4 bits (67), Expect = 4.7 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -3 Query: 581 ETVGEVRAVADMHQRKAEMARHSDAFIALPGGYGTLE 471 E +G+ A D + A +AR AF PGG GTL+ Sbjct: 215 EKIGKHEAALDWRKPAAALARQVRAFDPFPGGAGTLD 251
>Y4160_CLOAB (P33747) Hypothetical protein CAP0160 precursor| Length = 967 Score = 29.6 bits (65), Expect = 8.0 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Frame = -3 Query: 374 FIDKAVEEGFINTSARRIIVLAPTAEEL--MEKLEDYVPYHDRVASNLNWEIEAEIEHLG 201 FID + +G ++ + I+ + E+ M +DY+ Y++ + +++W + +HL Sbjct: 534 FIDNSDLDGALSKAGDYIMTVLNKEEQNSNMFLTDDYINYNESSSEDVSWSYTQDCKHLN 593 Query: 200 Y*PRRCGCSQ 171 Y CS+ Sbjct: 594 YDNDFVNCSK 603
>TIG_SYNP7 (Q935Z3) Trigger factor (TF)| Length = 474 Score = 29.6 bits (65), Expect = 8.0 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 13/134 (9%) Frame = -3 Query: 635 RHVIGVIPKTLMTPEISGETVGEVRAVADMHQRKAEMARHSDAFIALPGGYGTLEELLEV 456 R V P+T E++G+ + ++ R ++ DAF Y T+EEL Sbjct: 223 RTVDATFPETYAQEEVAGKAAQFTITLKELKTR--DLPELDDAFAQEASQYETIEELKTA 280 Query: 455 ITWAQLGIHHKPVGLLNVDGYYNSLLTFIDKAVEE--------GFINTSARRII-----V 315 +T H V D +L +D + E IN +A R+ V Sbjct: 281 LTERFQAEHESEVKASKRDAILTALADQLDVEIPESLLQREISAMINETASRLSGQGMDV 340 Query: 314 LAPTAEELMEKLED 273 EE++E+L + Sbjct: 341 RKLFTEEVLERLRE 354
>TIG_SYNP6 (Q5N1P5) Trigger factor (TF)| Length = 474 Score = 29.6 bits (65), Expect = 8.0 Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 13/134 (9%) Frame = -3 Query: 635 RHVIGVIPKTLMTPEISGETVGEVRAVADMHQRKAEMARHSDAFIALPGGYGTLEELLEV 456 R V P+T E++G+ + ++ R ++ DAF Y T+EEL Sbjct: 223 RTVDATFPETYAQEEVAGKAAQFTITLKELKTR--DLPELDDAFAQEASQYETIEELKTA 280 Query: 455 ITWAQLGIHHKPVGLLNVDGYYNSLLTFIDKAVEE--------GFINTSARRII-----V 315 +T H V D +L +D + E IN +A R+ V Sbjct: 281 LTERFQAEHESEVKASKRDAILTALADQLDVEIPESLLQREISAMINETASRLSGQGMDV 340 Query: 314 LAPTAEELMEKLED 273 EE++E+L + Sbjct: 341 RKLFTEEVLERLRE 354
>SYL_BORGA (Q662B4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 840 Score = 29.6 bits (65), Expect = 8.0 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = -3 Query: 389 NSLLTFIDKAV--EEGFINTSARRIIVLAPTAEELMEKLEDYVPYHDRVASNLNW 231 ++++ F+++ + E+ ++N II+L+P A L E+L +Y+ + N W Sbjct: 713 SAMMIFVNELIKYEKNYLNIFKPFIIILSPYAPHLAEELWEYIGETPSLFKNSKW 767
>CY43_TRYBB (Q99280) Receptor-type adenylate cyclase GRESAG 4.3 (EC 4.6.1.1)| (ATP pyrophosphate-lyase) (Adenylyl cyclase) Length = 1229 Score = 29.6 bits (65), Expect = 8.0 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -3 Query: 380 LTFIDKAVEEGFINTSARRIIVLAPTAEELMEKLEDYV 267 LTFID +N+ +R +I L+PT E+ + L +Y+ Sbjct: 555 LTFIDPITPTPHLNSFSRNVIHLSPTLEQQLYVLVNYL 592
>ATPBM_DAUCA (P37399) ATP synthase beta chain, mitochondrial precursor (EC| 3.6.3.14) Length = 547 Score = 29.6 bits (65), Expect = 8.0 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 3/102 (2%) Frame = -3 Query: 602 MTPEISGETVGEVRAVADMHQRKAEMARHSDAFIALPGGYGTLEELLEVITWAQLGIHHK 423 + P + TV + + + ++ A I +P G TL ++ VI I H+ Sbjct: 119 VAPSLGENTVRTIAMDGTEGLVRGQKVLNTGAPITIPVGRATLGRIINVIGEP---IDHR 175 Query: 422 PVGLLNVDGY---YNSLLTFIDKAVEEGFINTSARRIIVLAP 306 G + D Y + TF+D+A E+ + T + + +LAP Sbjct: 176 --GEIKTDQYLPIHREAPTFVDQATEQQILVTGIKVVDLLAP 215 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,762,118 Number of Sequences: 219361 Number of extensions: 1467508 Number of successful extensions: 4733 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4595 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4727 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
