ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13h23 |
|---|---|
| Clone Library Name | barley_pub |
>UPTG1_SOLTU (Q9SC19) Alpha-1,4-glucan-protein synthase [UDP-forming] 1 (EC| 2.4.1.112) (UDP-glucose:protein transglucosylase 1) (UPTG 1) Length = 365 Score = 210 bits (535), Expect = 2e-54 Identities = 98/134 (73%), Positives = 109/134 (81%) Frame = -1 Query: 591 GRYDDMWAGWCTKVITDHLSLGIKTGLPYIWHSKASNPFVNLKKEYNGIFWQEELIPFFQ 412 GRYDDMWAGWCTKVI DHL LGIKTGLPYIWHSKASNPFVNLKKEYNGIFWQEE+IPFFQ Sbjct: 232 GRYDDMWAGWCTKVICDHLGLGIKTGLPYIWHSKASNPFVNLKKEYNGIFWQEEIIPFFQ 291 Query: 411 SVTLSKEATTVQKCYLELAKQVKAKLGKVDGYFNKLADAMVTWIEAWDELNPPKGAITTT 232 + TL KE TTVQ+CYLEL+KQVK KL +D YF KL +AMVTWIEAWDELN + Sbjct: 292 AATLPKECTTVQQCYLELSKQVKKKLSSIDPYFTKLGEAMVTWIEAWDELNLLGTTWLSC 351 Query: 231 NSPAVKSK*EAVAY 190 SP V+ + ++ Y Sbjct: 352 LSPMVQQRLKSRCY 365
>UPTG_PEA (O04300) Alpha-1,4-glucan-protein synthase [UDP-forming] (EC| 2.4.1.112) (UDP-glucose:protein transglucosylase) (UPTG) (Reversibly glycosylated polypeptide) Length = 364 Score = 208 bits (530), Expect = 8e-54 Identities = 93/120 (77%), Positives = 104/120 (86%) Frame = -1 Query: 591 GRYDDMWAGWCTKVITDHLSLGIKTGLPYIWHSKASNPFVNLKKEYNGIFWQEELIPFFQ 412 GRYDDMWAGWC KVI DHL G+KTGLPYIWHSKASNPFVNLKKEY GIFWQEE+IPFFQ Sbjct: 235 GRYDDMWAGWCIKVICDHLGYGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQ 294 Query: 411 SVTLSKEATTVQKCYLELAKQVKAKLGKVDGYFNKLADAMVTWIEAWDELNPPKGAITTT 232 + TLSK+ T+VQKCY+EL+KQVK KLG +D YF KLADAMVTW+EAWDE+N K TT+ Sbjct: 295 AATLSKDCTSVQKCYIELSKQVKEKLGTIDPYFIKLADAMVTWVEAWDEINNNKSEETTS 354
>UPTG2_SOLTU (Q8RU27) Alpha-1,4-glucan-protein synthase [UDP-forming] 2 (EC| 2.4.1.112) (UDP-glucose:protein transglucosylase 2) (UPTG 2) Length = 366 Score = 204 bits (519), Expect = 2e-52 Identities = 91/112 (81%), Positives = 99/112 (88%) Frame = -1 Query: 591 GRYDDMWAGWCTKVITDHLSLGIKTGLPYIWHSKASNPFVNLKKEYNGIFWQEELIPFFQ 412 GRYDDMWAGWC KVI DHL LG+KTGLPYIWHSKASNPFVNLKKEY GI+WQEE+IPF Q Sbjct: 236 GRYDDMWAGWCIKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEEIIPFSQ 295 Query: 411 SVTLSKEATTVQKCYLELAKQVKAKLGKVDGYFNKLADAMVTWIEAWDELNP 256 S TL K+ T+VQ+CYLEL+KQVK KL +D YF KLADAMVTWIEAWDELNP Sbjct: 296 SATLPKDCTSVQQCYLELSKQVKEKLSTIDPYFTKLADAMVTWIEAWDELNP 347
>UPTG_MAIZE (P80607) Alpha-1,4-glucan-protein synthase [UDP-forming] (EC| 2.4.1.112) (UDP-glucose:protein transglucosylase) (UPTG) (Amylogenin) (Golgi-associated protein se-wap41) Length = 364 Score = 203 bits (516), Expect = 3e-52 Identities = 90/112 (80%), Positives = 99/112 (88%) Frame = -1 Query: 591 GRYDDMWAGWCTKVITDHLSLGIKTGLPYIWHSKASNPFVNLKKEYNGIFWQEELIPFFQ 412 GRYDDMWAGWC KVI DHLSLG+KTGLPYIWHSKASNPFVNLKKEY GIFWQE++IPFFQ Sbjct: 242 GRYDDMWAGWCVKVICDHLSLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEDIIPFFQ 301 Query: 411 SVTLSKEATTVQKCYLELAKQVKAKLGKVDGYFNKLADAMVTWIEAWDELNP 256 +VT+ K+ TVQKCY+ L+ QVK KLG +D YF KL DAMVTWIEAWDELNP Sbjct: 302 NVTIPKDCDTVQKCYIYLSGQVKEKLGTIDPYFVKLGDAMVTWIEAWDELNP 353
>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core| protein precursor (HSPG) (Perlecan) (PLC) Length = 4391 Score = 33.1 bits (74), Expect = 0.62 Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 10/106 (9%) Frame = -3 Query: 499 AQQSKQPVCELKEGIQRHLLAG---GADPLLPV----CDPLKGGHHCPEVLP*AGQASEG 341 A ++QP GI + G DP L V C P G C + G Sbjct: 1091 ASYAQQPAESRVSGISMDVAVPEETGQDPALEVEQCSCPPGYRGPSCQD-------CDTG 1143 Query: 340 EARQGGWLLQ---QAC*CHGHMDRGLGRA*PTKGCNHHHKQPCCEE 212 R L + C CHGH + +GC HH + P CE+ Sbjct: 1144 YTRTPSGLYLGTCERCSCHGHSEACEPETGACQGCQHHTEGPRCEQ 1189
>C_MEASI (P26035) Protein C| Length = 186 Score = 32.3 bits (72), Expect = 1.1 Identities = 19/42 (45%), Positives = 22/42 (52%) Frame = +3 Query: 327 PCRASPSLAWPAQGNTSGQWWPPLRGSQTGRRGSAPPARRCR 452 P R SPS WP SG+ W + QT + S PPARR R Sbjct: 11 PSRPSPSAHWP-----SGKLWQHGQKYQTTQDRSRPPARRRR 47
>CREA_ASPAC (O94166) DNA-binding protein creA (Carbon catabolite repressor)| Length = 431 Score = 32.0 bits (71), Expect = 1.4 Identities = 23/57 (40%), Positives = 29/57 (50%) Frame = -2 Query: 362 SWPSK*RRSSARWMATSTSLLMPWSHGSRPGTSLTHQRVQSPPQTALL*RASERQ*H 192 S PS + +S+ MA+S SLL P GSRP T Q + P + L RA R H Sbjct: 39 STPSSAQSTSS--MASSVSLLPPLMKGSRPATEEVRQDLPRPYKCPLCDRAFHRLEH 93
>EPHB4_HUMAN (P54760) Ephrin type-B receptor 4 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor HTK) Length = 987 Score = 31.6 bits (70), Expect = 1.8 Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 6/87 (6%) Frame = +3 Query: 327 PCRASPSLAWPAQGNTSG-----QWWPPLRGSQTGRRGSAPPARRCR-CIPSLSSQTGCL 488 PC PS +G +W PL ++G R A RCR C P S Sbjct: 319 PCTTPPSAPRSVVSRLNGSSLHLEWSAPL---ESGGREDLTYALRCRECRPGGS------ 369 Query: 489 LCCARCRADQS*YPGSNDQ*SPWCTIQ 569 CA C D + PG D PW ++ Sbjct: 370 --CAPCGGDLTFDPGPRDLVEPWVVVR 394
>C_MEASY (Q00794) Protein C| Length = 186 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = +3 Query: 327 PCRASPSLAWPAQGNTSGQWWPPLRGSQTGRRGSAPPARRCR 452 P R SPS WP SG+ W + QT + S PP RR R Sbjct: 11 PSRPSPSAHWP-----SGKLWQHGQKYQTTQDRSGPPTRRRR 47
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 31.2 bits (69), Expect = 2.3 Identities = 20/61 (32%), Positives = 25/61 (40%) Frame = +3 Query: 270 PRPRSM*PWHQQAC*SSHPPCRASPSLAWPAQGNTSGQWWPPLRGSQTGRRGSAPPARRC 449 PRP P + +A PP + P PAQ + P RG G +G PP R Sbjct: 865 PRPLPWPPGNDEAAKMQAPPPKKEPPKEEPAQLSGPEAGRKPARGVGGGGQGPPPPRREN 924 Query: 450 R 452 R Sbjct: 925 R 925
>CREA_ASPNG (Q05620) DNA-binding protein creA (Carbon catabolite repressor)| Length = 427 Score = 30.4 bits (67), Expect = 4.0 Identities = 23/59 (38%), Positives = 29/59 (49%) Frame = -2 Query: 368 TLSWPSK*RRSSARWMATSTSLLMPWSHGSRPGTSLTHQRVQSPPQTALL*RASERQ*H 192 T S PS + +S MA+S SLL P G+RP T Q + P + L RA R H Sbjct: 34 TPSTPSSTQSNSN--MASSVSLLPPLMKGARPATEEVRQDLPRPYKCPLCDRAFHRLEH 90
>CREA_ASPOR (Q9P889) DNA-binding protein creA (Carbon catabolite repressor)| Length = 429 Score = 30.4 bits (67), Expect = 4.0 Identities = 22/57 (38%), Positives = 28/57 (49%) Frame = -2 Query: 362 SWPSK*RRSSARWMATSTSLLMPWSHGSRPGTSLTHQRVQSPPQTALL*RASERQ*H 192 S PS + +S MA+S SLL P G+RP T Q + P + L RA R H Sbjct: 36 STPSSTQSNST--MASSVSLLPPLMKGARPATEEARQDLPRPYKCPLCDRAFHRLEH 90
>POL_FIVPE (P16088) Pol polyprotein [Contains: Protease (Retropepsin) (EC| 3.4.23.-); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) (dUTPase); Integrase (IN)] Length = 1124 Score = 30.0 bits (66), Expect = 5.2 Identities = 17/49 (34%), Positives = 24/49 (48%) Frame = +1 Query: 76 GKKVNFKLQRNGISQFINTNQNTSISVWVAHMNKRTVYVCYCLSLALHS 222 G K F + N SQ + N N ++ VW+ T + LSLA+HS Sbjct: 979 GVKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAVHS 1027
>TMPSD_HUMAN (Q9BYE2) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic| serine protease) (Membrane-type mosaic serine protease) Length = 581 Score = 30.0 bits (66), Expect = 5.2 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 13/70 (18%) Frame = +3 Query: 303 QAC*SSHPPCRASPSLAWPAQGNTSGQWWPPLR---------GSQTGR----RGSAPPAR 443 QA + PP RASP+ A PAQ + +G PP R G+ GR R S A Sbjct: 23 QASPAGTPPGRASPAQASPAQASPAGT--PPGRASPAQASPAGTPPGRASPGRASPAQAS 80 Query: 444 RCRCIPSLSS 473 R P+L+S Sbjct: 81 PARASPALAS 90
>HIS1_ANASP (Q8YVL0) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)| (ATP-PRT) Length = 214 Score = 30.0 bits (66), Expect = 5.2 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Frame = -1 Query: 579 DMWAGWCTKVITDHLSLGIKTGLPYIWHSKASNPFVNLKKE-YNGIFWQEELIPFFQSVT 403 D+ G+C + S K+ L HS+ ++ +VN +E + G+ E++P + SV Sbjct: 87 DLQFGYCRMSVAVKASSPYKSPLDLPAHSRVASKYVNSAREFFQGLDLPVEIVPLYGSVE 146 Query: 402 L 400 L Sbjct: 147 L 147
>EPHB4_MOUSE (P54761) Ephrin type-B receptor 4 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor MDK-2) (Developmental kinase 2) (Tyrosine kinase MYK-1) Length = 987 Score = 30.0 bits (66), Expect = 5.2 Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 6/87 (6%) Frame = +3 Query: 327 PCRASPSLAWPAQGNTSG-----QWWPPLRGSQTGRRGSAPPARRCR-CIPSLSSQTGCL 488 PC PS + +G +W PL ++G R A RCR C P S Sbjct: 319 PCTTPPSAPRSVVHHLNGSTLRLEWSAPL---ESGGREDLTYAVRCRECRPGGS------ 369 Query: 489 LCCARCRADQS*YPGSNDQ*SPWCTIQ 569 C C D + PG D PW I+ Sbjct: 370 --CLPCGGDMTFDPGPRDLVEPWVAIR 394
>HIS1_ANAVT (Q3M4Z2) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)| (ATP-PRT) Length = 218 Score = 30.0 bits (66), Expect = 5.2 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Frame = -1 Query: 579 DMWAGWCTKVITDHLSLGIKTGLPYIWHSKASNPFVNLKKE-YNGIFWQEELIPFFQSVT 403 D+ G+C + S K+ L HS+ ++ +VN +E + G+ E++P + SV Sbjct: 87 DLQFGYCRMSVAVKASSPYKSPLDLPAHSRVASKYVNSAREFFQGLDLPVEIVPLYGSVE 146 Query: 402 L 400 L Sbjct: 147 L 147
>LAMA5_MOUSE (Q61001) Laminin alpha-5 chain precursor| Length = 3718 Score = 29.6 bits (65), Expect = 6.8 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -3 Query: 304 C*CHGHMDRGLGRA*PTKGCNHHHKQPCCE 215 C CHGH DR L + GC H+ + CE Sbjct: 1865 CQCHGHSDRCLPGSGICVGCQHNTEGDQCE 1894
>F26_RANCA (Q91309) 6PF-2-K/Fru-2,6-P2ASE liver/muscle isozymes [Includes:| 6-phosphofructo-2-kinase (EC 2.7.1.105); Fructose-2,6-bisphosphatase (EC 3.1.3.46)] Length = 470 Score = 29.6 bits (65), Expect = 6.8 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +1 Query: 64 GGCPGKKVNFKLQRNGISQFINTNQNTSISVWVAHMNKRTVYVCYCL 204 GG G V K + + FI + Q + VW +HM KRT+ L Sbjct: 270 GGDSGLSVRGKQYAHELGNFIKSQQIPDLKVWTSHM-KRTIQTAEAL 315
>F261_HUMAN (P16118) 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1| (6PF-2-K/Fru-2,6-P2ASE liver isozyme) [Includes: 6-phosphofructo-2-kinase (EC 2.7.1.105); Fructose-2,6-bisphosphatase (EC 3.1.3.46)] Length = 471 Score = 29.6 bits (65), Expect = 6.8 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = +1 Query: 64 GGCPGKKVNFKLQRNGISQFINTNQNTSISVWVAHMNKRTVYVCYCLSL 210 GG G V K ++ FI + +S+ VW +HM KRT+ L + Sbjct: 271 GGDSGLSVRGKQYAYALANFIQSQGISSLKVWTSHM-KRTIQTAEALGV 318
>BEM2_ASHGO (Q9HF75) GTPase-activating protein BEM2| Length = 2071 Score = 29.3 bits (64), Expect = 8.9 Identities = 18/63 (28%), Positives = 27/63 (42%) Frame = -3 Query: 505 HLAQQSKQPVCELKEGIQRHLLAGGADPLLPVCDPLKGGHHCPEVLP*AGQASEGEARQG 326 H QQ +QP + +Q + G A C+ +K G C E + Q + R+G Sbjct: 92 HTQQQQQQP----QTPMQLQVPTGQAHKRTLTCEDMKAGARCEEQVSPCSQPAGSPVRRG 147 Query: 325 GWL 317 G L Sbjct: 148 GGL 150 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,540,646 Number of Sequences: 219361 Number of extensions: 2042994 Number of successful extensions: 6165 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5951 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6162 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
