ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13h22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ639767.1| Psidium guajava microsatellite DNA, clone mPgCIR18 54 3e-04
2dbj|AK099302.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.30
3dbj|AK063765.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.30
4gb|BC046576.1| Xenopus laevis eukaryotic translation initiation ... 40 4.7
5gb|AC159873.11| Medicago truncatula clone mth2-46p15, complete s... 40 4.7
6gb|AC125475.11| Medicago truncatula clone mth2-5j2, complete seq... 40 4.7
7gb|BT008978.1| Triticum aestivum clone wdk2c.pk005.h13:fis, full... 40 4.7
8emb|AL645751.12| Mouse DNA sequence from clone RP23-396K15 on ch... 40 4.7
9gb|AC151466.2| Xenopus tropicalis BAC clone ISB1-283J3 containin... 40 4.7
10emb|BX248100.9| Zebrafish DNA sequence from clone CH211-222O11 i... 40 4.7
11emb|BX649429.13| Zebrafish DNA sequence from clone DKEY-1H4 in l... 40 4.7

>emb|AJ639767.1| Psidium guajava microsatellite DNA, clone mPgCIR18
          Length = 356

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                       
Query: 248 ttctgtgagtccgtcagaagcattgcgatccgatcaattcccatcccccaaccgcccgnt 307
           ||||||||||| |||| |||||| || | || |||||| ||||||||||| || || | |
Sbjct: 114 ttctgtgagtctgtcaaaagcatggcaagcctatcaatacccatcccccagcctccagtt 173

                            
Query: 308 ggnggcaaagcatactc 324
           || |||||| |||||||
Sbjct: 174 ggaggcaaaccatactc 190



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>dbj|AK099302.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143D06, full
            insert sequence
          Length = 2164

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 224  gggaatagaagaacctncttgatgttctgtgagtccgtcagaagcattgcgatccgatca 283
            |||||||||||||| | |||||| ||||| || || ||||| | |||||  |  ||||||
Sbjct: 1898 gggaatagaagaacttccttgatattctgagaatcagtcagcaacattgtaaggcgatca 1839

                             
Query: 284  attcccatcccccaacc 300
            |||||||  ||||||||
Sbjct: 1838 attcccaatccccaacc 1822



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>dbj|AK063765.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B05, full
            insert sequence
          Length = 2215

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 224  gggaatagaagaacctncttgatgttctgtgagtccgtcagaagcattgcgatccgatca 283
            |||||||||||||| | |||||| ||||| || || ||||| | |||||  |  ||||||
Sbjct: 1898 gggaatagaagaacttccttgatattctgagaatcagtcagcaacattgtaaggcgatca 1839

                             
Query: 284  attcccatcccccaacc 300
            |||||||  ||||||||
Sbjct: 1838 attcccaatccccaacc 1822



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>gb|BC046576.1| Xenopus laevis eukaryotic translation initiation factor 2, subunit 1
            (alpha ), mRNA (cDNA clone MGC:53429 IMAGE:5571827),
            complete cds
          Length = 2392

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 104  caacactcgtgtgaaaccat 123
            ||||||||||||||||||||
Sbjct: 1192 caacactcgtgtgaaaccat 1211



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>gb|AC159873.11| Medicago truncatula clone mth2-46p15, complete sequence
          Length = 129948

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 47/57 (82%)
 Strand = Plus / Minus

                                                                      
Query: 280   atcaattcccatcccccaaccgcccgntggnggcaaagcatactcgagagcantgca 336
             |||||| ||||| ||||||||||| | ||| |||| | ||||||| | |||| ||||
Sbjct: 97817 atcaatacccataccccaaccgccagttggtggcataccatactccaaagcagtgca 97761



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>gb|AC125475.11| Medicago truncatula clone mth2-5j2, complete sequence
          Length = 165679

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 47/57 (82%)
 Strand = Plus / Plus

                                                                      
Query: 280   atcaattcccatcccccaaccgcccgntggnggcaaagcatactcgagagcantgca 336
             |||||| ||||| ||||||||||| | ||| |||| | ||||||| | |||| ||||
Sbjct: 97026 atcaatacccataccccaaccgccagttggtggcataccatactccaaagcagtgca 97082



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>gb|BT008978.1| Triticum aestivum clone wdk2c.pk005.h13:fis, full insert mRNA
           sequence
          Length = 702

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 103/132 (78%)
 Strand = Plus / Minus

                                                                       
Query: 208 ttggggcttcattgttgggaatagaagaacctncttgatgttctgtgagtccgtcagaag 267
           |||||||||||| |  ||||| |  ||||| | |||||||||||| || || ||||| | 
Sbjct: 407 ttggggcttcatggccgggaacaagagaacttccttgatgttctgggaatctgtcagcat 348

                                                                       
Query: 268 cattgcgatccgatcaattcccatcccccaaccgcccgntggnggcaaagcatactcgag 327
           |||||  |  |||||||||||||  |||||||| || |  || ||||   ||||||||||
Sbjct: 347 cattgtaaggcgatcaattcccaaaccccaaccacctgtcggaggcagcccatactcgag 288

                       
Query: 328 agcantgcagaa 339
            ||| |||||||
Sbjct: 287 ggcagtgcagaa 276



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>emb|AL645751.12| Mouse DNA sequence from clone RP23-396K15 on chromosome 11 Contains the
              5' end of the Gabrg2 gene for gamma-aminobutyric acid
              (GABA-A) receptor, subunit gamma 2, the 3' end of the
              Gabra1 gene for gamma-aminobutyric acid (GABA-A) receptor,
              subunit alpha 1 and the 3' end of a novel gene, complete
              sequence
          Length = 186884

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    gtgaaaccatgtttcttaat 133
              ||||||||||||||||||||
Sbjct: 124398 gtgaaaccatgtttcttaat 124417



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>gb|AC151466.2| Xenopus tropicalis BAC clone ISB1-283J3 containing neuroD1 gene,
             complete cds, complete sequence
          Length = 85293

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    caaacacaaatccacaaata 67
             ||||||||||||||||||||
Sbjct: 46511 caaacacaaatccacaaata 46530



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>emb|BX248100.9| Zebrafish DNA sequence from clone CH211-222O11 in linkage group 7,
              complete sequence
          Length = 223489

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    aattatgtagcatgtaatat 150
              ||||||||||||||||||||
Sbjct: 136788 aattatgtagcatgtaatat 136807



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>emb|BX649429.13| Zebrafish DNA sequence from clone DKEY-1H4 in linkage group 7, complete
             sequence
          Length = 268480

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   aattatgtagcatgtaatat 150
             ||||||||||||||||||||
Sbjct: 98006 aattatgtagcatgtaatat 97987


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,941,268
Number of Sequences: 3902068
Number of extensions: 1941268
Number of successful extensions: 35120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 35110
Number of HSP's gapped (non-prelim): 11
length of query: 357
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 335
effective length of database: 17,147,199,772
effective search space: 5744311923620
effective search space used: 5744311923620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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