Clone Name | rbasd13h22 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ639767.1| Psidium guajava microsatellite DNA, clone mPgCIR18 Length = 356 Score = 54.0 bits (27), Expect = 3e-04 Identities = 64/77 (83%) Strand = Plus / Plus Query: 248 ttctgtgagtccgtcagaagcattgcgatccgatcaattcccatcccccaaccgcccgnt 307 ||||||||||| |||| |||||| || | || |||||| ||||||||||| || || | | Sbjct: 114 ttctgtgagtctgtcaaaagcatggcaagcctatcaatacccatcccccagcctccagtt 173 Query: 308 ggnggcaaagcatactc 324 || |||||| ||||||| Sbjct: 174 ggaggcaaaccatactc 190
>dbj|AK099302.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143D06, full insert sequence Length = 2164 Score = 44.1 bits (22), Expect = 0.30 Identities = 63/77 (81%) Strand = Plus / Minus Query: 224 gggaatagaagaacctncttgatgttctgtgagtccgtcagaagcattgcgatccgatca 283 |||||||||||||| | |||||| ||||| || || ||||| | ||||| | |||||| Sbjct: 1898 gggaatagaagaacttccttgatattctgagaatcagtcagcaacattgtaaggcgatca 1839 Query: 284 attcccatcccccaacc 300 ||||||| |||||||| Sbjct: 1838 attcccaatccccaacc 1822
>dbj|AK063765.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B05, full insert sequence Length = 2215 Score = 44.1 bits (22), Expect = 0.30 Identities = 63/77 (81%) Strand = Plus / Minus Query: 224 gggaatagaagaacctncttgatgttctgtgagtccgtcagaagcattgcgatccgatca 283 |||||||||||||| | |||||| ||||| || || ||||| | ||||| | |||||| Sbjct: 1898 gggaatagaagaacttccttgatattctgagaatcagtcagcaacattgtaaggcgatca 1839 Query: 284 attcccatcccccaacc 300 ||||||| |||||||| Sbjct: 1838 attcccaatccccaacc 1822
>gb|BC046576.1| Xenopus laevis eukaryotic translation initiation factor 2, subunit 1 (alpha ), mRNA (cDNA clone MGC:53429 IMAGE:5571827), complete cds Length = 2392 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 caacactcgtgtgaaaccat 123 |||||||||||||||||||| Sbjct: 1192 caacactcgtgtgaaaccat 1211
>gb|AC159873.11| Medicago truncatula clone mth2-46p15, complete sequence Length = 129948 Score = 40.1 bits (20), Expect = 4.7 Identities = 47/57 (82%) Strand = Plus / Minus Query: 280 atcaattcccatcccccaaccgcccgntggnggcaaagcatactcgagagcantgca 336 |||||| ||||| ||||||||||| | ||| |||| | ||||||| | |||| |||| Sbjct: 97817 atcaatacccataccccaaccgccagttggtggcataccatactccaaagcagtgca 97761
>gb|AC125475.11| Medicago truncatula clone mth2-5j2, complete sequence Length = 165679 Score = 40.1 bits (20), Expect = 4.7 Identities = 47/57 (82%) Strand = Plus / Plus Query: 280 atcaattcccatcccccaaccgcccgntggnggcaaagcatactcgagagcantgca 336 |||||| ||||| ||||||||||| | ||| |||| | ||||||| | |||| |||| Sbjct: 97026 atcaatacccataccccaaccgccagttggtggcataccatactccaaagcagtgca 97082
>gb|BT008978.1| Triticum aestivum clone wdk2c.pk005.h13:fis, full insert mRNA sequence Length = 702 Score = 40.1 bits (20), Expect = 4.7 Identities = 103/132 (78%) Strand = Plus / Minus Query: 208 ttggggcttcattgttgggaatagaagaacctncttgatgttctgtgagtccgtcagaag 267 |||||||||||| | ||||| | ||||| | |||||||||||| || || ||||| | Sbjct: 407 ttggggcttcatggccgggaacaagagaacttccttgatgttctgggaatctgtcagcat 348 Query: 268 cattgcgatccgatcaattcccatcccccaaccgcccgntggnggcaaagcatactcgag 327 ||||| | ||||||||||||| |||||||| || | || |||| |||||||||| Sbjct: 347 cattgtaaggcgatcaattcccaaaccccaaccacctgtcggaggcagcccatactcgag 288 Query: 328 agcantgcagaa 339 ||| ||||||| Sbjct: 287 ggcagtgcagaa 276
>emb|AL645751.12| Mouse DNA sequence from clone RP23-396K15 on chromosome 11 Contains the 5' end of the Gabrg2 gene for gamma-aminobutyric acid (GABA-A) receptor, subunit gamma 2, the 3' end of the Gabra1 gene for gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 1 and the 3' end of a novel gene, complete sequence Length = 186884 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 gtgaaaccatgtttcttaat 133 |||||||||||||||||||| Sbjct: 124398 gtgaaaccatgtttcttaat 124417
>gb|AC151466.2| Xenopus tropicalis BAC clone ISB1-283J3 containing neuroD1 gene, complete cds, complete sequence Length = 85293 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 caaacacaaatccacaaata 67 |||||||||||||||||||| Sbjct: 46511 caaacacaaatccacaaata 46530
>emb|BX248100.9| Zebrafish DNA sequence from clone CH211-222O11 in linkage group 7, complete sequence Length = 223489 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 aattatgtagcatgtaatat 150 |||||||||||||||||||| Sbjct: 136788 aattatgtagcatgtaatat 136807
>emb|BX649429.13| Zebrafish DNA sequence from clone DKEY-1H4 in linkage group 7, complete sequence Length = 268480 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 aattatgtagcatgtaatat 150 |||||||||||||||||||| Sbjct: 98006 aattatgtagcatgtaatat 97987 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,941,268 Number of Sequences: 3902068 Number of extensions: 1941268 Number of successful extensions: 35120 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 35110 Number of HSP's gapped (non-prelim): 11 length of query: 357 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 335 effective length of database: 17,147,199,772 effective search space: 5744311923620 effective search space used: 5744311923620 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)