Clone Name | rbasd13h14 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | KR410_HUMAN (Q9BYQ7) Keratin-associated protein 4-10 (Keratin-as... | 33 | 0.89 | 2 | CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22 | 31 | 3.4 | 3 | PPCK_NEUCR (Q7RVS9) Phosphoenolpyruvate carboxykinase [ATP] (EC ... | 30 | 5.8 | 4 | SIAH1_BRARE (Q7ZVG6) Ubiquitin ligase Siah1 (EC 6.3.2.-) (Seven ... | 30 | 9.9 | 5 | LMNA_XENLA (P11048) Lamin-A | 30 | 9.9 | 6 | HCYC_SCUCO (Q8T115) Hemocyanin subunit C precursor | 30 | 9.9 |
---|
>KR410_HUMAN (Q9BYQ7) Keratin-associated protein 4-10 (Keratin-associated| protein 4.10) (Ultrahigh sulfur keratin-associated protein 4.10) Length = 127 Score = 33.1 bits (74), Expect = 0.89 Identities = 22/83 (26%), Positives = 29/83 (34%) Frame = -1 Query: 493 CSNIITSCTCCPWCGGFACQVR*MRRVSNFGPCVLYRSLRPAVGVPLCMYEPLCCIASHQ 314 C + + S C P C C R S P + RP+ GV C PLCC + + Sbjct: 36 CPSCVVSSCCRPSCSQTTCCQTTCCRPSCCRPVCCQTTCRPSCGVSSCC-RPLCCQTTCR 94 Query: 313 SVCAMEEGSLCF*SPQEVCRRFC 245 C + CR C Sbjct: 95 PSCGVSSCCRPLCCQTTCCRTTC 117
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 31.2 bits (69), Expect = 3.4 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = +3 Query: 201 SSYRGPGARPWLPTAQKRRQTSCGDQKHSDPSSIAQT 311 S YR PG R P+ ++ R S DQ HS P S + T Sbjct: 51 SPYRSPGERTPSPSPRRDRSLSPRDQPHSHPRSRSPT 87
>PPCK_NEUCR (Q7RVS9) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)| Length = 561 Score = 30.4 bits (67), Expect = 5.8 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +3 Query: 72 LLIRPHREEIQHNHVDVSVFGPG 140 +LIRP REE++H H D +++ G Sbjct: 166 MLIRPPREELEHFHPDYTIYNAG 188
>SIAH1_BRARE (Q7ZVG6) Ubiquitin ligase Siah1 (EC 6.3.2.-) (Seven in absentia| homolog 1) (Siah-1) Length = 282 Score = 29.6 bits (65), Expect = 9.9 Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 13/74 (17%) Frame = -1 Query: 511 QSPSTFCSNIITSCTCCPWCGGFACQVR--*MRRVSN--FGPCVLYRSLRPAVGVP---- 356 QS CSN TCCP C G +R M +V+N PC Y S V +P Sbjct: 56 QSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPC-KYASSGCEVTLPHTDK 114 Query: 355 -----LCMYEPLCC 329 LC + P C Sbjct: 115 AEHEELCEFRPYSC 128
>LMNA_XENLA (P11048) Lamin-A| Length = 665 Score = 29.6 bits (65), Expect = 9.9 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 6/117 (5%) Frame = +1 Query: 142 NDNQHEHRYHRQHPLVWCSGRATEDQEPGHGYQLRKNV------GKPPVAIKSIVILLPS 303 +D +H H +H H +PG Y LR G+P A KS++ S Sbjct: 555 DDMEHHHHHHHHH-----HDGQNSSGDPGE-YNLRSRTIVCTSCGRP--AEKSVLASQGS 606 Query: 304 HRLTGAMRCNKAAHTYIRALRRPGAVTGTTHRDQN*IHAAFISLDMQNHHTKDSKCN 474 +TG+ + ++ T R R G +G + ++ + FI + Q C+ Sbjct: 607 GLVTGSSGSSSSSVTLTRTYRSTGGTSGGSGLGESPVTRNFIVGNGQRAQVAPQNCS 663
>HCYC_SCUCO (Q8T115) Hemocyanin subunit C precursor| Length = 673 Score = 29.6 bits (65), Expect = 9.9 Identities = 12/34 (35%), Positives = 14/34 (41%) Frame = +1 Query: 127 FLAPANDNQHEHRYHRQHPLVWCSGRATEDQEPG 228 FL N H H +H HP +W S E G Sbjct: 197 FLEDLGLNSHHHHWHVIHPAIWVSELGNEKDRKG 230 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,151,418 Number of Sequences: 219361 Number of extensions: 2152634 Number of successful extensions: 5332 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 4952 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5319 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7479594804 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)