ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13h14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KR410_HUMAN (Q9BYQ7) Keratin-associated protein 4-10 (Keratin-as... 33 0.89
2CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22 31 3.4
3PPCK_NEUCR (Q7RVS9) Phosphoenolpyruvate carboxykinase [ATP] (EC ... 30 5.8
4SIAH1_BRARE (Q7ZVG6) Ubiquitin ligase Siah1 (EC 6.3.2.-) (Seven ... 30 9.9
5LMNA_XENLA (P11048) Lamin-A 30 9.9
6HCYC_SCUCO (Q8T115) Hemocyanin subunit C precursor 30 9.9

>KR410_HUMAN (Q9BYQ7) Keratin-associated protein 4-10 (Keratin-associated|
           protein 4.10) (Ultrahigh sulfur keratin-associated
           protein 4.10)
          Length = 127

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 22/83 (26%), Positives = 29/83 (34%)
 Frame = -1

Query: 493 CSNIITSCTCCPWCGGFACQVR*MRRVSNFGPCVLYRSLRPAVGVPLCMYEPLCCIASHQ 314
           C + + S  C P C    C      R S   P     + RP+ GV  C   PLCC  + +
Sbjct: 36  CPSCVVSSCCRPSCSQTTCCQTTCCRPSCCRPVCCQTTCRPSCGVSSCC-RPLCCQTTCR 94

Query: 313 SVCAMEEGSLCF*SPQEVCRRFC 245
             C +             CR  C
Sbjct: 95  PSCGVSSCCRPLCCQTTCCRTTC 117



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>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 201 SSYRGPGARPWLPTAQKRRQTSCGDQKHSDPSSIAQT 311
           S YR PG R   P+ ++ R  S  DQ HS P S + T
Sbjct: 51  SPYRSPGERTPSPSPRRDRSLSPRDQPHSHPRSRSPT 87



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>PPCK_NEUCR (Q7RVS9) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)|
          Length = 561

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 72  LLIRPHREEIQHNHVDVSVFGPG 140
           +LIRP REE++H H D +++  G
Sbjct: 166 MLIRPPREELEHFHPDYTIYNAG 188



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>SIAH1_BRARE (Q7ZVG6) Ubiquitin ligase Siah1 (EC 6.3.2.-) (Seven in absentia|
           homolog 1) (Siah-1)
          Length = 282

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
 Frame = -1

Query: 511 QSPSTFCSNIITSCTCCPWCGGFACQVR--*MRRVSN--FGPCVLYRSLRPAVGVP---- 356
           QS    CSN     TCCP C G    +R   M +V+N    PC  Y S    V +P    
Sbjct: 56  QSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPC-KYASSGCEVTLPHTDK 114

Query: 355 -----LCMYEPLCC 329
                LC + P  C
Sbjct: 115 AEHEELCEFRPYSC 128



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>LMNA_XENLA (P11048) Lamin-A|
          Length = 665

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
 Frame = +1

Query: 142 NDNQHEHRYHRQHPLVWCSGRATEDQEPGHGYQLRKNV------GKPPVAIKSIVILLPS 303
           +D +H H +H  H             +PG  Y LR         G+P  A KS++    S
Sbjct: 555 DDMEHHHHHHHHH-----HDGQNSSGDPGE-YNLRSRTIVCTSCGRP--AEKSVLASQGS 606

Query: 304 HRLTGAMRCNKAAHTYIRALRRPGAVTGTTHRDQN*IHAAFISLDMQNHHTKDSKCN 474
             +TG+   + ++ T  R  R  G  +G +   ++ +   FI  + Q        C+
Sbjct: 607 GLVTGSSGSSSSSVTLTRTYRSTGGTSGGSGLGESPVTRNFIVGNGQRAQVAPQNCS 663



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>HCYC_SCUCO (Q8T115) Hemocyanin subunit C precursor|
          Length = 673

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +1

Query: 127 FLAPANDNQHEHRYHRQHPLVWCSGRATEDQEPG 228
           FL     N H H +H  HP +W S    E    G
Sbjct: 197 FLEDLGLNSHHHHWHVIHPAIWVSELGNEKDRKG 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,151,418
Number of Sequences: 219361
Number of extensions: 2152634
Number of successful extensions: 5332
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5319
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7479594804
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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