Clone Name | rbasd13h14 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK071068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081K10, full insert sequence Length = 1529 Score = 129 bits (65), Expect = 1e-26 Identities = 149/177 (84%) Strand = Plus / Minus Query: 534 tacttaatgttctcttgataagttcaggccagcaatagatagtccttcctgatgtacgca 593 |||||||| | ||||||||||| ||||||||| |||| |||| |||||| | || | | | Sbjct: 1039 tacttaatctcctcttgataagctcaggccagaaatacatagcccttccagctggaggta 980 Query: 594 ggttgaagggaggtaatatattgccatttctcaagccatcaactacttctccatctttcc 653 | ||||| | ||||||| || | ||||||||||||| ||| | |||||||||||||||| Sbjct: 979 gattgaatgaaggtaatgtacttccatttctcaagctatccataacttctccatctttcc 920 Query: 654 tcctctttgtaaagctctcatggtctctatttgtaaaccataagtttctcataaaac 710 ||||||||||||| |||||| | ||||||||||||||||||| || | |||||||| Sbjct: 919 tcctctttgtaaaactctcacgtcctctatttgtaaaccataaattccgcataaaac 863
>gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0020H14, complete sequence Length = 185623 Score = 101 bits (51), Expect = 3e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 604 aggtaatatattgccatttctcaagccatcaactacttctccatctttcctcctctttgt 663 ||||||| || | ||||||||||||| ||| | |||||||||||||||||||||||||| Sbjct: 118307 aggtaatgtacttccatttctcaagctatccataacttctccatctttcctcctctttgt 118366 Query: 664 aaagctctcatggtctctatttgtaaaccataagtttctcataaaac 710 ||| |||||| | ||||||||||||||||||| || | |||||||| Sbjct: 118367 aaaactctcacgtcctctatttgtaaaccataaattccgcataaaac 118413 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Plus Query: 534 tacttaatgttctcttgataagttcaggccagcaatagatag 575 |||||||| | ||||||||||| ||||||||| |||| |||| Sbjct: 118077 tacttaatctcctcttgataagctcaggccagaaatacatag 118118
>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01, complete sequence Length = 160142 Score = 101 bits (51), Expect = 3e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 604 aggtaatatattgccatttctcaagccatcaactacttctccatctttcctcctctttgt 663 ||||||| || | ||||||||||||| ||| | |||||||||||||||||||||||||| Sbjct: 157534 aggtaatgtacttccatttctcaagctatccataacttctccatctttcctcctctttgt 157593 Query: 664 aaagctctcatggtctctatttgtaaaccataagtttctcataaaac 710 ||| |||||| | ||||||||||||||||||| || | |||||||| Sbjct: 157594 aaaactctcacgtcctctatttgtaaaccataaattccgcataaaac 157640 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Plus Query: 534 tacttaatgttctcttgataagttcaggccagcaatagatag 575 |||||||| | ||||||||||| ||||||||| |||| |||| Sbjct: 157304 tacttaatctcctcttgataagctcaggccagaaatacatag 157345
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 101 bits (51), Expect = 3e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 604 aggtaatatattgccatttctcaagccatcaactacttctccatctttcctcctctttgt 663 ||||||| || | ||||||||||||| ||| | |||||||||||||||||||||||||| Sbjct: 21564451 aggtaatgtacttccatttctcaagctatccataacttctccatctttcctcctctttgt 21564510 Query: 664 aaagctctcatggtctctatttgtaaaccataagtttctcataaaac 710 ||| |||||| | ||||||||||||||||||| || | |||||||| Sbjct: 21564511 aaaactctcacgtcctctatttgtaaaccataaattccgcataaaac 21564557 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Plus Query: 534 tacttaatgttctcttgataagttcaggccagcaatagatag 575 |||||||| | ||||||||||| ||||||||| |||| |||| Sbjct: 21564221 tacttaatctcctcttgataagctcaggccagaaatacatag 21564262
>gb|AC127240.3| Mus musculus BAC clone RP24-387H11 from chromosome 8, complete sequence Length = 212579 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 gcatcctctggtctggtgctc 197 ||||||||||||||||||||| Sbjct: 21942 gcatcctctggtctggtgctc 21922
>emb|AL450026.10| Human DNA sequence from clone RP11-439A18 on chromosome 9 Contains the 5' UTR of a variant of a novel gene (MGC20553) and a CpG island, complete sequence Length = 84632 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 422 cattcatctcacttgacatgc 442 ||||||||||||||||||||| Sbjct: 922 cattcatctcacttgacatgc 942
>emb|AL353641.9| Human DNA sequence from clone RP11-142P12 on chromosome 9, complete sequence Length = 35009 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 422 cattcatctcacttgacatgc 442 ||||||||||||||||||||| Sbjct: 33931 cattcatctcacttgacatgc 33951
>gb|AC099760.5| Mus musculus BAC clone RP23-122E16 from chromosome 8, complete sequence Length = 193884 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 gcatcctctggtctggtgctc 197 ||||||||||||||||||||| Sbjct: 175311 gcatcctctggtctggtgctc 175291
>ref|NM_113703.1| Arabidopsis thaliana ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism AT3G27870 mRNA, complete cds Length = 3542 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 631 atcaactacttctccatctttcct 654 ||||||||||| |||||||||||| Sbjct: 3075 atcaactacttgtccatctttcct 3052
>gb|AY691230.1| Clostridium cocleatum 60 kDa chaperonin (cpn60) gene, partial cds Length = 552 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 472 aactagtaatgatgttgcta 491 |||||||||||||||||||| Sbjct: 144 aactagtaatgatgttgcta 163
>gb|AC147263.3| Mus musculus BAC clone RP24-213I13 from chromosome 13, complete sequence Length = 182371 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 636 ctacttctccatctttcctcctct 659 ||||||||||||||||||| |||| Sbjct: 41700 ctacttctccatctttcctgctct 41723
>gb|AC146263.2| Pan troglodytes BAC clone RP43-28O1 from 7, complete sequence Length = 141252 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 catacatacataagggcact 362 |||||||||||||||||||| Sbjct: 58821 catacatacataagggcact 58840
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 668 ctctcatggtctctatttgtaaac 691 |||||||||||||||||| ||||| Sbjct: 13912282 ctctcatggtctctatttataaac 13912305
>gb|AC113203.10| Mus musculus chromosome 5, clone RP23-276C23, complete sequence Length = 201674 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 caggcagcatcctctggtct 190 |||||||||||||||||||| Sbjct: 63779 caggcagcatcctctggtct 63798
>gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1057D12, from chromosome 3, complete sequence Length = 161676 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 668 ctctcatggtctctatttgtaaac 691 |||||||||||||||||| ||||| Sbjct: 99200 ctctcatggtctctatttataaac 99177
>emb|CR731314.1|CNS0GR87 Tetraodon nigroviridis full-length cDNA Length = 1240 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cggcaaacctcctgtggcga 274 |||||||||||||||||||| Sbjct: 957 cggcaaacctcctgtggcga 976
>emb|CR730888.2|CNS0GQWD Tetraodon nigroviridis full-length cDNA Length = 1260 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cggcaaacctcctgtggcga 274 |||||||||||||||||||| Sbjct: 967 cggcaaacctcctgtggcga 986
>emb|CR729286.2|CNS0GPNW Tetraodon nigroviridis full-length cDNA Length = 1242 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cggcaaacctcctgtggcga 274 |||||||||||||||||||| Sbjct: 958 cggcaaacctcctgtggcga 977
>emb|CR727241.2|CNS0GO33 Tetraodon nigroviridis full-length cDNA Length = 1191 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cggcaaacctcctgtggcga 274 |||||||||||||||||||| Sbjct: 912 cggcaaacctcctgtggcga 931
>emb|CR723839.2|CNS0GLGL Tetraodon nigroviridis full-length cDNA Length = 1256 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cggcaaacctcctgtggcga 274 |||||||||||||||||||| Sbjct: 968 cggcaaacctcctgtggcga 987
>emb|Z82253.1|HSU151E3 Human DNA sequence from clone LL0XNC01-151E3 on chromosome X, complete sequence Length = 42246 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 646 atctttcctcctctttgtaaagct 669 ||||||||||||||||| |||||| Sbjct: 10501 atctttcctcctctttggaaagct 10524
>emb|AL139083.15| Human DNA sequence from clone RP11-270C18 on chromosome 13 Contains the 3' end of the NBEA gene for neurobeachin (BCL8B FLJ10197 KIAA1544) and a novel gene, complete sequence Length = 162081 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 tagaatattcagatctactt 538 |||||||||||||||||||| Sbjct: 127282 tagaatattcagatctactt 127263
>emb|AL080316.8|HSJ104O17 Human DNA sequence from clone RP1-104O17 on chromosome 6q16.1-16.3 Contains parts of 3 novel genes, complete sequence Length = 105137 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 593 aggttgaagggaggtaatat 612 |||||||||||||||||||| Sbjct: 50231 aggttgaagggaggtaatat 50212
>emb|BX548154.1|CNS09SBK clone A24K23, A41I8 of Tetraodon nigroviridis Length = 265677 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 cggcaaacctcctgtggcga 274 |||||||||||||||||||| Sbjct: 42300 cggcaaacctcctgtggcga 42281
>emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment 2/7 Length = 349061 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 591 gcaggttgaagggaggtaatatat 614 |||||||||||||||| ||||||| Sbjct: 11630 gcaggttgaagggagggaatatat 11653
>emb|BX572609.1|CNS09SBP Tetraodon nigroviridis BAC sequence Length = 265677 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 cggcaaacctcctgtggcga 274 |||||||||||||||||||| Sbjct: 42300 cggcaaacctcctgtggcga 42281
>gb|AC027251.6| Homo sapiens chromosome 8, clone RP11-14G5, complete sequence Length = 130377 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 639 cttctccatctttcctcctc 658 |||||||||||||||||||| Sbjct: 50228 cttctccatctttcctcctc 50209
>emb|BX248230.21| Zebrafish DNA sequence from clone CH211-213O11 in linkage group 11, complete sequence Length = 217432 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 cacagactgactggtgcgat 323 |||||||||||||||||||| Sbjct: 11980 cacagactgactggtgcgat 11961
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome Length = 2272360 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 591 gcaggttgaagggaggtaatatat 614 |||||||||||||||| ||||||| Sbjct: 2177224 gcaggttgaagggagggaatatat 2177201
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 668 ctctcatggtctctatttgtaaac 691 |||||||||||||||||| ||||| Sbjct: 13907257 ctctcatggtctctatttataaac 13907280
>gb|AC008496.6| Homo sapiens chromosome 5 clone CTC-431G16, complete sequence Length = 135434 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 640 ttctccatctttcctcctct 659 |||||||||||||||||||| Sbjct: 30927 ttctccatctttcctcctct 30946
>dbj|AP000371.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K16N12 Length = 58864 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 631 atcaactacttctccatctttcct 654 ||||||||||| |||||||||||| Sbjct: 24997 atcaactacttgtccatctttcct 24974
>gb|AC003681.1|AC003681 Human PAC clone RP3-394A18 from 22q12.1-qter, complete sequence Length = 88528 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 catacatacataagggcact 362 |||||||||||||||||||| Sbjct: 8895 catacatacataagggcact 8876
>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome Length = 2153922 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 591 gcaggttgaagggaggtaatatat 614 |||||||||||||||| ||||||| Sbjct: 1998217 gcaggttgaagggagggaatatat 1998240
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 582 ctgatgtacgcaggttgaag 601 |||||||||||||||||||| Sbjct: 5824218 ctgatgtacgcaggttgaag 5824237
>emb|AL672218.9| Mouse DNA sequence from clone RP24-BM212H6 on chromosome 11, complete sequence Length = 196938 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 caggcagcatcctctggtct 190 |||||||||||||||||||| Sbjct: 99915 caggcagcatcctctggtct 99934
>emb|AL845292.4| Mouse DNA sequence from clone RP23-386I21 on chromosome 2, complete sequence Length = 186607 Score = 40.1 bits (20), Expect = 10.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 aagttgagggtgactgtagc 515 |||||||||||||||||||| Sbjct: 20410 aagttgagggtgactgtagc 20429
>gb|AC163685.4| Mus musculus BAC clone RP23-4M16 from chromosome 13, complete sequence Length = 242910 Score = 40.1 bits (20), Expect = 10.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 636 ctacttctccatctttcctcctct 659 ||||||||||||||||||| |||| Sbjct: 200189 ctacttctccatctttcctgctct 200212 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,232,790 Number of Sequences: 3902068 Number of extensions: 6232790 Number of successful extensions: 122998 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122798 Number of HSP's gapped (non-prelim): 200 length of query: 727 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 704 effective length of database: 17,143,297,704 effective search space: 12068881583616 effective search space used: 12068881583616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)