>FA21C_PONPY (Q5RDC1) Protein FAM21C|
          Length = 1340

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
 Frame = +3

Query: 141 GLQVLDCLLHCLDVNAGQLACRRRDNGAAFPLL----DVWQEQP-RLLLGGEQRHTWLVA 305
           GLQVLD     LD+ AG       D      L+    D++ ++P   L+G +        
Sbjct: 139 GLQVLDSAFEQLDIKAGNSDSEEDDANGRVELILEPKDLYIDRPLPYLIGSKLFMEQEDV 198

Query: 306 GVGEL--DRGGVGRHDAGRVVD-EAGELSRSSDEQIGRLLTDD 425
           G+GEL  + G VG  D G +VD E  +    SDE       +D
Sbjct: 199 GLGELSSEEGSVG-SDRGSIVDTEEEKEEEESDEDFAHHSDND 240

>FA21C_HUMAN (Q9Y4E1) Protein FAM21C|
          Length = 1320

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
 Frame = +3

Query: 141 GLQVLDCLLHCLDVNAGQLACRRRDNGAAFPLL----DVWQEQP-RLLLGGEQRHTWLVA 305
           GLQVLD     LD+ AG       D      L+    D++ ++P   L+G +        
Sbjct: 140 GLQVLDSAFEQLDIKAGNSDSEEDDANGRVELILEPKDLYIDRPLPYLIGSKLFMEQEDV 199

Query: 306 GVGEL--DRGGVGRHDAGRVVD-EAGELSRSSDE 398
           G+GEL  + G VG  D G +VD E  +    SDE
Sbjct: 200 GLGELSSEEGSVG-SDRGSIVDTEEEKEEEESDE 232

>RS9_TREPA (O83987) 30S ribosomal protein S9|
          Length = 129

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
 Frame = +3

Query: 171 CLDVNAGQLACRRRDNGAAFPLLDVWQ--EQPRLLLGGEQRHTWL--VAGVGELDRGGVG 338
           C+ +  G +   RRD GA FP  +  +   +P      E+R+  +  V G G   + G  
Sbjct: 19  CIRMGNGNVTVNRRDVGAYFPTAEQLRRVREPLFATANERRYDVIVNVYGGGLDGQAGAC 78

Query: 339 RHDAGRVVDEAGELSRSSDEQIGRLLTDD 425
            H   R +  A + S  +  + G LLT D
Sbjct: 79  AHGIARALVRA-DASNQASLRAGGLLTRD 106

>VATE_CHLPN (Q9Z995) V-type ATP synthase subunit E (EC 3.6.3.14) (V-type ATPase|
           subunit E)
          Length = 208

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
 Frame = -3

Query: 341 ATNTAAVQLANARDKPCVALFSSKEKARLFLPYVEER-----KSCTVVASATGKLAGIDI 177
           A + AA  L NA+++    +  ++E+AR  L   EER     K   V  S  GK A   +
Sbjct: 25  AEDEAAALLHNAKEQAKRIIQEAQEEARKILETAEERAHQKIKQGEVALSQAGKRA---L 81

Query: 176 EAVKKAVKD 150
           EA+K+AV++
Sbjct: 82  EALKQAVEN 90

>HEM11_HORVU (Q42843) Glutamyl-tRNA reductase 1, chloroplast precursor (EC|
           1.2.1.70) (GluTR)
          Length = 527

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
 Frame = -3

Query: 395 ITTPGQLTCLINDSAGVVATNTAAVQLANAR--DKPCVA----LFSSKEKARLFLPYVEE 234
           IT   ++ C  N SAG V+ ++AAV+LA  +     C++    L  + +  +L + ++  
Sbjct: 221 ITAGKRVRCETNISAGAVSVSSAAVELAMMKLPKSECLSARMLLIGAGKMGKLVVKHL-I 279

Query: 233 RKSCTVVASATGKLAGIDIEAVKKAVKDLE 144
            K C  V      +  +D  A+++ +KD+E
Sbjct: 280 AKGCKKVVVVNRSVERVD--AIREEMKDIE 307

>VGLE_BHV1S (Q08101) Glycoprotein E precursor|
          Length = 575

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 191 PACLSPTRQRCSFSSPRRMAGTASPSPWRRTAPHMACRGRW 313
           PACL P   +CSF+SP R + T     + +  P  A  GRW
Sbjct: 286 PACLHPADAQCSFASPYR-SETVYSRLYEQCRPDPA--GRW 323

>FHAB_BORPE (P12255) Filamentous hemagglutinin|
          Length = 3590

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 22/74 (29%), Positives = 31/74 (41%)
 Frame = +3

Query: 213  DNGAAFPLLDVWQEQPRLLLGGEQRHTWLVAGVGELDRGGVGRHDAGRVVDEAGELSRSS 392
            D GA   L          + GGE      +A VG +D  G G     ++V +AG     +
Sbjct: 917  DGGAGVALQSAKASGTLHVQGGEHLDLGTLAAVGAVDVNGTGDVRVAKLVSDAG-----A 971

Query: 393  DEQIGRLLTDDFLD 434
            D Q GR +T   +D
Sbjct: 972  DLQAGRSMTLGIVD 985

>VGLE_CHV9D (Q04548) Glycoprotein E precursor (Membrane glycoprotein 2)|
          Length = 604

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = +2

Query: 191 PACLSPTRQRCSFSSP---RRMAGT 256
           P+CLSP    C+F+SP   RR+A T
Sbjct: 386 PSCLSPENPECTFASPHIARRVANT 410

>HEM12_HORVU (Q96563) Glutamyl-tRNA reductase 2 (EC 1.2.1.70) (GluTR) (Fragment)|
          Length = 465

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
 Frame = -3

Query: 395 ITTPGQLTCLINDSAGVVATNTAAVQLANAR--DKPCVA----LFSSKEKARLFLPYVEE 234
           IT   +  C  N SAG V+ ++AAV+LA  +     C++    L  + +  +L + ++  
Sbjct: 159 ITAGKRARCETNISAGAVSVSSAAVELAMMKLPKSECLSARMLLIGAGKMGKLVVKHL-I 217

Query: 233 RKSCTVVASATGKLAGIDIEAVKKAVKDLE 144
            K C  V      +  +D  A+++ +KD+E
Sbjct: 218 AKGCKKVVVVNRSVERVD--AIREEMKDIE 245

>GSPJ_XANCP (P31740) General secretion pathway protein J precursor|
          Length = 211

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +3

Query: 207 RRDNGAAFPL---LDVWQEQPRLLLGGEQRHTWLVAGVGELDRGGVGRHDAGRVVD 365
           RR   AA P+   +D   +QP L +G  QR  +       L RGG   HD   V D
Sbjct: 59  RRRLSAALPIAMGIDTQSQQPMLFVGEPQRMRFAADVPDYLGRGGPYLHDVSVVGD 114

>FLIC_SHIFL (Q08860) Flagellin|
          Length = 550

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 19/74 (25%), Positives = 38/74 (51%)
 Frame = +1

Query: 109 DYVCANAKLGAGSKSLTAFFTASMSMPASLPVADATTVQLFLSSTYGRNSLAFSLEENSA 288
           D V ANA +     +++A + A+ +      V+D  TVQ  +++ +G  + A + + +SA
Sbjct: 190 DLVAANATVVGNKYTVSAGYDAAKASDLLAGVSDGDTVQATINNGFGTAASATNYKYDSA 249

Query: 289 THGLSRALASWTAA 330
           +   S    + +AA
Sbjct: 250 SKSYSFDTTTASAA 263

>PTC1_HUMAN (Q13635) Protein patched homolog 1 (PTC1) (PTC)|
          Length = 1447

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 23/93 (24%), Positives = 35/93 (37%)
 Frame = +1

Query: 100 DDFDYVCANAKLGAGSKSLTAFFTASMSMPASLPVADATTVQLFLSSTYGRNSLAFSLEE 279
           D ++ +   A++G G         A    PA+ P  ++T              L  +L  
Sbjct: 276 DSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNST------------KPLDMALVL 323

Query: 280 NSATHGLSRALASWTAAVLVATTPAESLMRQVS 378
           N   HGLSR    W   ++V  T   S  + VS
Sbjct: 324 NGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVS 356

>NP1L2_MOUSE (P51860) Nucleosome assembly protein 1-like 2 (Brain-specific|
           protein, X-linked)
          Length = 460

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
 Frame = +3

Query: 273 GGEQRHTWLVAGVGELDRGGVGRHDAGRVVDEAGELSRSSDEQ-----IGRLLTDDFLDL 437
           GG+     + AGVGE  +G      +G    + G     SD       IG LL  DF++ 
Sbjct: 44  GGQHGEETVAAGVGEEGKGEEAAAGSGEDAGKCGGTDEDSDSDRPKGLIGYLLDTDFVES 103

Query: 438 FSV 446
             V
Sbjct: 104 LPV 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,232,656
Number of Sequences: 219361
Number of extensions: 1055866
Number of successful extensions: 4729
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4728
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)