>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)|
          Length = 5120

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
 Frame = +3

Query: 51  PTRKPKTQ---LSP*LLQRGPPTE---NRKRNRVQTNSFTVAISPSPGTTPLVMTGPPLL 212
           P+++P  Q   + P   Q GPP +   + K    QT        P PG TPL  TGP   
Sbjct: 248 PSQQPARQGGPVKPSAQQAGPPKQQPGSEKPTAQQTGPAKQPPQPGPGKTPLQQTGPVKQ 307

Query: 213 LFRQRGASENKTMNTGS 263
           +  Q G ++  +   G+
Sbjct: 308 VPPQAGPTKPSSQTAGA 324

>SWR1_ASPFU (Q4WAS9) Helicase swr1 (EC 3.6.1.-)|
          Length = 1695

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
 Frame = +3

Query: 48  GPTRKPKTQLSP*LLQRGPPTENRKRNRVQTNSFTVAISPSPGTTPLVMTGPPLLLFRQR 227
           G  R  +    P  LQ  PP++ RK    Q ++    +S   G   +V + P  +   Q 
Sbjct: 100 GKRRSSRVNAIPLELQ--PPSDKRKTRAAQRSTVNKNLS---GNGKVVASSPLSMSVSQS 154

Query: 228 GASENKT---MNTGSELHSLPLGIKARRNKSGR 317
           G +   T   + TGS   + P G  ARR +  R
Sbjct: 155 GINGKHTGGNLTTGSPRTATPRGASARRRRISR 187

>RBNS5_HUMAN (Q9H1K0) Rabenosyn-5 (FYVE finger-containing Rab5 effector protein|
           rabenosyn-5) (Zinc finger FYVE domain-containing protein
           20) (110 kDa protein)
          Length = 784

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 240 SHSRPAVGTGAMEVPSSQVV*SPEMARLQP*RSWFGPDCV 121
           +H   A+  G+  VPSS    +P ++  QP R W GP  V
Sbjct: 567 THLAYALDLGSSPVPSSTAPKTPSLSSTQPTRVWSGPPAV 606

>RF1_PSEPK (Q88PW5) Peptide chain release factor 1 (RF-1)|
          Length = 360

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +3

Query: 90  LQRGPPTENRKRNRVQTNSFTVAISPSPGTTPLVMTGPPLL---LFRQRGASENKTMNTG 260
           +QR P TE++   RV T++ TVA+ P P     +   P  L    +R  GA       T 
Sbjct: 186 VQRVPETESQ--GRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRASGAGGQHVNKTD 243

Query: 261 SELH--SLPLGI 290
           S +    LP GI
Sbjct: 244 SAIRITHLPTGI 255

>RF1_DEIRA (P56905) Peptide chain release factor 1 (RF-1)|
          Length = 375

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +3

Query: 90  LQRGPPTENRKRNRVQTNSFTVAISP--SPGTTPLVMTGPPLLLFRQRGASENKTMNTGS 263
           +QR P TE+  + R+ T++ TVA+ P   PG   L ++   + +FR +GA       T S
Sbjct: 187 VQRVPATES--QGRIHTSTATVAVLPEAEPGEVNLDLSEVRIDVFRSQGAGGQGVNTTDS 244

Query: 264 ELHSL 278
            + ++
Sbjct: 245 AVRAV 249

>RF1_PSESM (Q888C1) Peptide chain release factor 1 (RF-1)|
          Length = 360

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +3

Query: 90  LQRGPPTENRKRNRVQTNSFTVAISPSPGTTPLVMTGPPLL---LFRQRGASENKTMNTG 260
           +QR P TE++   R+ T++ TVA+ P P     +   P  L    +R  GA       T 
Sbjct: 186 VQRVPKTESQ--GRIHTSACTVAVLPEPDEQQAIEINPADLRVDTYRSSGAGGQHVNKTD 243

Query: 261 SELH--SLPLGI 290
           S +    LP GI
Sbjct: 244 SAIRITHLPSGI 255

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
 Frame = +3

Query: 87   LLQRGPPTENRKRNRVQTNSFTVAISPSPGTTPLVMTGPPLLLFRQRGASENKTM----- 251
            L +  P T  + +   +    +     S   TPLVMT     +F    +SE KT      
Sbjct: 2662 LKEYSPETRKKHKKSKRRLKSSSTADTSAAQTPLVMTPLTPSIFDVHSSSECKTKFDNFD 2721

Query: 252  NTGSELHSLPLGIKA--RRNKSGRRSAKR 332
            +  +E  S+PL I A  RR    R+  KR
Sbjct: 2722 DLKTECSSIPLEISAGERRKHKERKEKKR 2750


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,811,432
Number of Sequences: 219361
Number of extensions: 2269026
Number of successful extensions: 6202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6197
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)