Clone Name | rbasd13h12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK163492.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230308C24 product:hypothetical protein, full insert sequence Length = 2286 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 532 aagaaatttgggaagaagtgg 552 ||||||||||||||||||||| Sbjct: 1881 aagaaatttgggaagaagtgg 1861
>dbj|AK122226.2| Mus musculus mRNA for mKIAA0237 protein Length = 5865 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 532 aagaaatttgggaagaagtgg 552 ||||||||||||||||||||| Sbjct: 5455 aagaaatttgggaagaagtgg 5435
>gb|AC003983.1|AC003983 Human PAC clone RP1-93I3 from Xq23, complete sequence Length = 105563 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 acaagaaaacctaaaacacaa 74 ||||||||||||||||||||| Sbjct: 42525 acaagaaaacctaaaacacaa 42545
>emb|AL606904.12| Mouse DNA sequence from clone RP23-182D20 on chromosome 4, complete sequence Length = 172024 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 532 aagaaatttgggaagaagtgg 552 ||||||||||||||||||||| Sbjct: 134795 aagaaatttgggaagaagtgg 134775
>ref|XM_517838.1| PREDICTED: Pan troglodytes similar to C1q and tumor necrosis factor related protein 3; complement-c1q tumor necrosis factor-related protein 3; collagenous repeat-containing sequence of 26-kDa; 2310005P21Rik (LOC461954), mRNA Length = 1293 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 655 cagcatggccccaagggagagaag 678 |||||||||||||| ||||||||| Sbjct: 850 cagcatggccccaaaggagagaag 873
>ref|XM_610159.2| PREDICTED: Bos taurus similar to collagenous repeat-containing, transcript variant 1 (LOC531659), mRNA Length = 1137 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 655 cagcatggccccaagggagagaag 678 |||||||||||||| ||||||||| Sbjct: 363 cagcatggccccaaaggagagaag 386
>ref|XM_863853.1| PREDICTED: Bos taurus similar to collagenous repeat-containing, transcript variant 2 (LOC531659), mRNA Length = 1377 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 655 cagcatggccccaagggagagaag 678 |||||||||||||| ||||||||| Sbjct: 603 cagcatggccccaaaggagagaag 626
>ref|XM_424395.1| PREDICTED: Gallus gallus similar to ADAM 9 precursor (A disintegrin and metalloproteinase domain 9) (Cellular disintegrin-related protein) (Metalloprotease/disintegrin/cysteine-rich protein 9) (Myeloma cell metalloproteinase) (Meltrin gamma) (LOC426783), mRNA Length = 888 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 tcagcagcttccatctccct 436 |||||||||||||||||||| Sbjct: 735 tcagcagcttccatctccct 716
>ref|XM_988943.1| PREDICTED: Mus musculus ankyrin repeat domain 48 (Ankrd48), mRNA Length = 4062 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 ttccatctccctcgtcctct 444 |||||||||||||||||||| Sbjct: 2228 ttccatctccctcgtcctct 2247
>ref|XM_125967.5| PREDICTED: Mus musculus ankyrin repeat domain 48 (Ankrd48), mRNA Length = 4491 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 ttccatctccctcgtcctct 444 |||||||||||||||||||| Sbjct: 2228 ttccatctccctcgtcctct 2247
>ref|XM_383752.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03576.1) partial mRNA Length = 2052 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 gacgccgtagccctgacacg 387 |||||||||||||||||||| Sbjct: 592 gacgccgtagccctgacacg 611
>ref|XM_568799.1| Cryptococcus neoformans var. neoformans JEC21 ribosomal large subunit biogenesis-related protein (CNB01260) partial mRNA Length = 1961 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 421 cagcttccatctccctcgtcctct 444 ||||||||||||||||| |||||| Sbjct: 1297 cagcttccatctccctcatcctct 1274
>gb|AY358388.1| Homo sapiens clone DNA44686 CTRP3 (UNQ753) mRNA, complete cds Length = 1712 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 655 cagcatggccccaagggagagaag 678 |||||||||||||| ||||||||| Sbjct: 374 cagcatggccccaaaggagagaag 397
>gb|AC148304.3| Medicago truncatula clone mth2-21b19, complete sequence Length = 110520 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 406 caccaacctcatcagcagcttccatctc 433 |||||||||| ||||||||||| ||||| Sbjct: 15271 caccaacctcgtcagcagcttctatctc 15298
>emb|AL365434.13| Human DNA sequence from clone RP11-236B18 on chromosome 10 Contains three novel genes and a DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 18 (Myc-regulated) (DDX18) pseudogene, complete sequence Length = 158357 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 668 agggagagaagaacatgcct 687 |||||||||||||||||||| Sbjct: 55934 agggagagaagaacatgcct 55953
>emb|AL353782.23| Human DNA sequence from clone RP11-207C11 on chromosome 9 Contains the 5' end of the GPR51 gene for G protein-coupled receptor 51 (HG20, GABBR2, GPRC3B, GABABR2), the 3' end of a novel gene (FLJ36928), a CDC10 cell division cycle 10 homolog (S. cerevisiae) (SEPT7) pseudogene and a CpG island, complete sequence Length = 165358 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 ctcctcttgcagaatccata 514 |||||||||||||||||||| Sbjct: 132032 ctcctcttgcagaatccata 132051
>gb|AF173888.1| Homo sapiens MSTP113 (MST113) mRNA, complete cds Length = 1688 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 655 cagcatggccccaagggagagaag 678 |||||||||||||| ||||||||| Sbjct: 341 cagcatggccccaaaggagagaag 364
>emb|AL031943.11|HS223B1 Human DNA sequence from clone RP1-223B1 on chromosome 6p24.1-25.3 Contains the 3' end of a putative novel gene, complete sequence Length = 126281 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ggtcagagctgcacagcctc 278 |||||||||||||||||||| Sbjct: 110720 ggtcagagctgcacagcctc 110701
>emb|AL021395.16|HS269M15 Human DNA sequence from clone RP1-269M15 on chromosome 20q12-13.12 Contains the PPIAL gene for peptidylprolyl isomerase A (cyclophilin A)-like pseudogene, the 5' end of the PTPRT gene for protein tyrosine phosphatase receptor type T, a novel gene and two CpG Islands, complete sequence Length = 177562 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 401 gataacaccaacctcatcagcagc 424 |||||||||||||||| ||||||| Sbjct: 89501 gataacaccaacctcagcagcagc 89478
>emb|AL669935.7| Mouse DNA sequence from clone RP23-387E5 on chromosome 11 Contains the 3' end of the gene for a novel ankyrin repeat containing protein, a endothelial differentiation-related factor 1 (Edf1) pseudogene, a novel gene, a novel pseudogene and a postsynaptic protein (Cript) pseudogene, complete sequence Length = 95039 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 ttccatctccctcgtcctct 444 |||||||||||||||||||| Sbjct: 26925 ttccatctccctcgtcctct 26944
>gb|AC010421.7| Homo sapiens chromosome 5 clone CTD-2191P18, complete sequence Length = 129039 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 655 cagcatggccccaagggagagaag 678 |||||||||||||| ||||||||| Sbjct: 10589 cagcatggccccaaaggagagaag 10566
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 421 cagcttccatctccctcgtcctct 444 ||||||||||||||||| |||||| Sbjct: 384020 cagcttccatctccctcatcctct 384043
>dbj|AK075533.1| Homo sapiens cDNA PSEC0232 fis, clone HEMBA1006549, moderately similar to Complement-c1q tumor necrosis factor-related protein 3 precursor Length = 1709 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 655 cagcatggccccaagggagagaag 678 |||||||||||||| ||||||||| Sbjct: 386 cagcatggccccaaaggagagaag 409
>dbj|AK132751.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4922505C15 product:Ankyrin-like protein (1700012M14Rik protein) homolog [Mus musculus], full insert sequence Length = 3951 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 ttccatctccctcgtcctct 444 |||||||||||||||||||| Sbjct: 2227 ttccatctccctcgtcctct 2246
>gb|AF399011.1| Pseudomonas phage phiKZ, complete genome Length = 280334 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 caccaacctcatcagcagct 425 |||||||||||||||||||| Sbjct: 195077 caccaacctcatcagcagct 195096
>dbj|AK005775.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700008J08 product:hypothetical protein, full insert sequence Length = 1673 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 ttccatctccctcgtcctct 444 |||||||||||||||||||| Sbjct: 33 ttccatctccctcgtcctct 52
>gb|AF326976.1|AF326976 Homo sapiens putative secretory protein CORS26 mRNA, complete cds Length = 1730 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 655 cagcatggccccaagggagagaag 678 |||||||||||||| ||||||||| Sbjct: 374 cagcatggccccaaaggagagaag 397
>gb|AF329837.1|AF329837 Homo sapiens complement-c1q tumor necrosis factor-related protein (CTRP3) mRNA, complete cds Length = 1710 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 655 cagcatggccccaagggagagaag 678 |||||||||||||| ||||||||| Sbjct: 381 cagcatggccccaaaggagagaag 404
>gb|AC139783.3| Homo sapiens chromosome 5 clone RP11-1084J3, complete sequence Length = 189108 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 655 cagcatggccccaagggagagaag 678 |||||||||||||| ||||||||| Sbjct: 143206 cagcatggccccaaaggagagaag 143183
>gb|AC025578.26| Homo sapiens 12 BAC RP11-340M11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115528 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 tccatctccctcgtcctctt 445 |||||||||||||||||||| Sbjct: 93777 tccatctccctcgtcctctt 93758
>gb|AC139792.2| Homo sapiens chromosome 5 clone RP11-1250I15, complete sequence Length = 207459 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 655 cagcatggccccaagggagagaag 678 |||||||||||||| ||||||||| Sbjct: 151453 cagcatggccccaaaggagagaag 151476
>ref|NM_181435.4| Homo sapiens C1q and tumor necrosis factor related protein 3 (C1QTNF3), transcript variant 2, mRNA Length = 3789 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 655 cagcatggccccaagggagagaag 678 |||||||||||||| ||||||||| Sbjct: 604 cagcatggccccaaaggagagaag 627
>ref|NM_030945.2| Homo sapiens C1q and tumor necrosis factor related protein 3 (C1QTNF3), transcript variant 1, mRNA Length = 3570 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 655 cagcatggccccaagggagagaag 678 |||||||||||||| ||||||||| Sbjct: 385 cagcatggccccaaaggagagaag 408
>ref|XM_226833.3| PREDICTED: Rattus norvegicus C1q and tumor necrosis factor related protein 3 (predicted) (C1qtnf3_predicted), mRNA Length = 2065 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 655 cagcatggccccaagggagagaag 678 |||||||||||||| ||||||||| Sbjct: 691 cagcatggccccaaaggagagaag 714
>gb|DQ163920.1| Bacteriophage SD1-M, complete genome Length = 281083 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 caccaacctcatcagcagct 425 |||||||||||||||||||| Sbjct: 196171 caccaacctcatcagcagct 196190
>dbj|AB209261.1| Homo sapiens mRNA for C1q and tumor necrosis factor related protein 3 variant protein Length = 3433 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 655 cagcatggccccaagggagagaag 678 |||||||||||||| ||||||||| Sbjct: 334 cagcatggccccaaaggagagaag 357
>emb|AL645854.10| Mouse DNA sequence from clone RP23-192P17 on chromosome 11, complete sequence Length = 211829 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 ccaacctcatcagcagcttc 427 |||||||||||||||||||| Sbjct: 152221 ccaacctcatcagcagcttc 152202
>gb|AC163648.2| Mus musculus BAC clone RP23-220E20 from chromosome 17, complete sequence Length = 169556 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 533 agaaatttgggaagaagtgggagt 556 |||||||||| ||||||||||||| Sbjct: 92643 agaaatttggaaagaagtgggagt 92666
>emb|AL713785.1|HSM803064 Homo sapiens mRNA; cDNA DKFZp547I039 (from clone DKFZp547I039) Length = 4138 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 671 gagagaagaacatgcctcac 690 |||||||||||||||||||| Sbjct: 1731 gagagaagaacatgcctcac 1712 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,522,624 Number of Sequences: 3902068 Number of extensions: 5522624 Number of successful extensions: 137472 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 137389 Number of HSP's gapped (non-prelim): 83 length of query: 691 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 668 effective length of database: 17,143,297,704 effective search space: 11451722866272 effective search space used: 11451722866272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)