ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13h09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X66376.1|HVJASIP H.vulgare mRNA for jasmonate-induced protein Length = 1892 Score = 601 bits (303), Expect = e-168 Identities = 467/522 (89%), Gaps = 11/522 (2%) Strand = Plus / Minus Query: 36 gacacttatttttgaactcgtacggagttccata--gtatttgtagttgatagtagtccg 93 ||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct: 1812 gacacttatttttcaactcgtactgagttccatatagtatttgtagttgatagtagtccg 1753 Query: 94 ctggttcacatggatgtctaccaaggatagtccgaccatgagattgtcacctcgaattca 153 || | |||||||| |||||||||||| || ||||||||| |||||||||||||||||||| Sbjct: 1752 ctcgctcacatgggtgtctaccaagggtactccgaccataagattgtcacctcgaattca 1693 Query: 154 gcaccattgacaccaacaagacgttccgtatgcaggccgtcgatggcagttttgaactca 213 ||| |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| Sbjct: 1692 gcatcattgacaccaacaagacgtcctgtatggaggccgtcgatggcagttttgaactca 1633 Query: 214 agctcgcctctaacaatttcatctccggatccgccgcgacgaaggtcaagctcaatcgtc 273 |||||||||||||||||||||||||||||||| || |||||| ||||||||||||||| Sbjct: 1632 agctcgcctctaacaatttcatctccggatccaccatgacgaatgtcaagctcaatcgtg 1573 Query: 274 agcggcatgtgcagcggcaaggcgagtgcatgcctcgccaacggaaccggctccccgggt 333 ||||||||||||||||||| ||| || |||||||||||||| || ||| ||||||| ||| Sbjct: 1572 agcggcatgtgcagcggcacggcaagcgcatgcctcgccaaggggaccagctccccaggt 1513 Query: 334 cgcacgtgcactccctgcttgttagcggcctccttgtagaagagcacgcaaccgacgtcg 393 |||||| ||||||| ||||||||| |||||||||||||| || |||| ||| Sbjct: 1512 cgcacgcgcactcc---------agcggcctcgttgtagaagagcacacagccgaaatcg 1462 Query: 394 aacagcttgctgcgagcaacgatcctgccgacgagaacctcttcgtctcgggactgcagg 453 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1461 aacagcttgctgcgagcaacgatcctgccgacgagaaccacttcgtctcgggactgcagg 1402 Query: 454 cgagaaagcttcacgtcgacccggccttggatgccattgcttaggacggcgtagatcacc 513 | || ||||||||| |||||||||||||||| ||| |||||||| || |||||||||||| Sbjct: 1401 ccagcaagcttcacatcgacccggccttggacgccgttgcttagaactgcgtagatcacc 1342 Query: 514 tccgcggggccatagcctgtgcgtacagtctccgatatggcc 555 ||||||||||| ||| |||| | |||||||| ||||||||| Sbjct: 1341 tccgcggggccgcagcgtgtgaggacagtctctgatatggcc 1300
>emb|AJ234729.1|HVU234729 Hordeum vulgare genomic DNA fragment; clone MWG2037.uni Length = 328 Score = 210 bits (106), Expect = 4e-51 Identities = 113/114 (99%), Gaps = 1/114 (0%) Strand = Plus / Plus Query: 453 gcgagaaagcttcacgtcgacccggccttggatgccattgcttaggacggcgtagatcac 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gcgagaaagcttcacgtcgacccggccttggatgccattgcttaggacggcgtagatcac 60 Query: 513 ctccgcggggccatagcctgtg-cgtacagtctccgatatggccctgttgtagt 565 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 61 ctccgcggggccatagcctgtgccgtacagtctccgatatggccctgttgtagt 114
>gb|AY109619.1| Zea mays CL9605_1 mRNA sequence Length = 1251 Score = 172 bits (87), Expect = 8e-40 Identities = 253/308 (82%), Gaps = 9/308 (2%) Strand = Plus / Plus Query: 112 taccaaggatagtccgaccatgagattgtcacctcgaattcagcaccattgacaccaaca 171 |||||||| || | ||||||||| |||| ||| || |||||||| ||||| | |||||| Sbjct: 169 taccaagggtactgcgaccatgaaattgccacttccaattcagcgccattttctccaaca 228 Query: 172 agacgttccgtatgcaggccgtcgatggcagttttgaactcaagctcgcctctaacaatt 231 || |||||||| ||| |||||| | | |||| ||||||||||| | |||| ||||||| Sbjct: 229 agtcgttccgtgtgctggccgttggtcgcaggattgaactcaaggacccctccaacaatt 288 Query: 232 tcatctccggatccgccgcgacgaaggtcaagctcaatcgtcagcggcatgtgcagcggc 291 ||||| ||||| | || || | |||||||||||||||||||||||||||||||||||| Sbjct: 289 tcatcgccggaacagc---gatgcaggtcaagctcaatcgtcagcggcatgtgcagcggc 345 Query: 292 aaggcgagtgcatgcctcgccaacggaaccggctccccgggtcgcacgtgcactccctgc 351 | |||||| || | |||||||||| ||| | ||| |||||||||| |||||| Sbjct: 346 acggcgagcgcttccctcgccaactgaatcagctnnnnnggtcgcacgttcactcc---a 402 Query: 352 ttgttagcggcctccttgtagaagagcacgcaaccgacgtcgaacagcttgctgcgagca 411 |||| | | ||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 403 ttgtcacc---ctctttgtagaagagcacgcagccgacgtcgaacagcttgctgcgagca 459 Query: 412 acgatcct 419 |||||||| Sbjct: 460 acgatcct 467 Score = 91.7 bits (46), Expect = 2e-15 Identities = 97/114 (85%) Strand = Plus / Plus Query: 452 ggcgagaaagcttcacgtcgacccggccttggatgccattgcttaggacggcgtagatca 511 |||||| ||| || ||| ||||||||||||||| ||| ||||| |||||||| ||||||| Sbjct: 515 ggcgagcaagtttgacggcgacccggccttggacgccgttgctcaggacggcatagatca 574 Query: 512 cctccgcggggccatagcctgtgcgtacagtctccgatatggccctgttgtagt 565 | || |||||||||||||| || | |||||||| ||||||||||||||||| Sbjct: 575 cttcagcggggccatagcccgtttggacagtctcgactatggccctgttgtagt 628
>gb|BT017846.1| Zea mays clone EL01N0510E02.c mRNA sequence Length = 1034 Score = 168 bits (85), Expect = 1e-38 Identities = 217/259 (83%), Gaps = 9/259 (3%) Strand = Plus / Minus Query: 166 ccaacaagacgttccgtatgcaggccgtcgatggcagttttgaactcaagctcgcctcta 225 |||||||| |||||||| ||| |||||| | | |||| ||||||||||| | |||| | Sbjct: 795 ccaacaagtcgttccgtgtgctggccgttggtcgcaggattgaactcaaggacccctcca 736 Query: 226 acaatttcatctccggatccgccgcgacgaaggtcaagctcaatcgtcagcggcatgtgc 285 ||||||||||| ||||| | || || | |||||||||||||||||||||||||||||| Sbjct: 735 acaatttcatcgccggaacagc---gatgcaggtcaagctcaatcgtcagcggcatgtgc 679 Query: 286 agcggcaaggcgagtgcatgcctcgccaacggaaccggctccccgggtcgcacgtgcact 345 ||||||| ||||||||| | |||||||||| ||||| || |||| |||||||||| |||| Sbjct: 678 agcggcacggcgagtgcttccctcgccaactgaaccagcccccccggtcgcacgttcact 619 Query: 346 ccctgcttgttagcggcctccttgtagaagagcacgcaaccgacgtcgaacagcttgctg 405 || |||| | | ||| ||||||||||||||||| || ||||| |||||||||||| Sbjct: 618 cc---attgtcacc---ctctttgtagaagagcacgcagccaacgtcaaacagcttgctg 565 Query: 406 cgagcaacgatcctgccga 424 |||||||||||||| |||| Sbjct: 564 cgagcaacgatcctcccga 546 Score = 81.8 bits (41), Expect = 2e-12 Identities = 98/117 (83%) Strand = Plus / Minus Query: 449 gcaggcgagaaagcttcacgtcgacccggccttggatgccattgcttaggacggcgtaga 508 |||| |||| ||| || ||| ||||||||||||||| ||| ||||| |||||||| |||| Sbjct: 506 gcagtcgagcaagtttgacggcgacccggccttggacgccgttgctcaggacggcataga 447 Query: 509 tcacctccgcggggccatagcctgtgcgtacagtctccgatatggccctgttgtagt 565 |||| || || ||||||||||| || | |||||||| ||||||||||||||||| Sbjct: 446 tcacttcagcagggccatagcccgtttggacagtctcgactatggccctgttgtagt 390
>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence Length = 154441 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 111 ctaccaaggatagtccgaccatgagattgtcac 143 ||||||||| ||||| |||||||||||||||| Sbjct: 139378 ctaccaagggaagtccaaccatgagattgtcac 139410
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 111 ctaccaaggatagtccgaccatgagattgtcac 143 ||||||||| ||||| |||||||||||||||| Sbjct: 3175607 ctaccaagggaagtccaaccatgagattgtcac 3175575
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 111 ctaccaaggatagtccgaccatgagattgtcac 143 ||||||||| ||||| |||||||||||||||| Sbjct: 3184312 ctaccaagggaagtccaaccatgagattgtcac 3184280
>ref|XM_631318.1| Dictyostelium discoideum ADP-ribosylation factor-like protein (DDB0229377), partial mRNA Length = 588 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 tatttgtagttgatagtagt 90 |||||||||||||||||||| Sbjct: 203 tatttgtagttgatagtagt 222
>gb|AC166828.3| Mus musculus BAC clone RP23-332O23 from chromosome 14, complete sequence Length = 216845 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 tggttcacatggatgtctac 114 |||||||||||||||||||| Sbjct: 151583 tggttcacatggatgtctac 151564
>gb|AY687447.1| Uncultured bacterium clone HZ16 genomic sequence Length = 10613 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 269 tcgtcagcggcatgtgcagcggca 292 |||||||||||||| ||||||||| Sbjct: 5733 tcgtcagcggcatgggcagcggca 5756
>gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome 7, complete sequence Length = 190553 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cgtcagcggcatgtgcagcg 289 |||||||||||||||||||| Sbjct: 127045 cgtcagcggcatgtgcagcg 127026
>gb|AC074047.6|AC074047 Mus musculus 7 BAC RP23-377F9 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 150351 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cgtcagcggcatgtgcagcg 289 |||||||||||||||||||| Sbjct: 33476 cgtcagcggcatgtgcagcg 33457
>gb|AC092081.3| Gallus gallus clone WAG-77D19, complete sequence Length = 144092 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 cctccttgtagaagagcacg 381 |||||||||||||||||||| Sbjct: 78990 cctccttgtagaagagcacg 78971
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 498 gacggcgtagatcacctccg 517 |||||||||||||||||||| Sbjct: 8688430 gacggcgtagatcacctccg 8688449
>gb|AC164099.3| Mus musculus BAC clone RP23-10H9 from chromosome 14, complete sequence Length = 221612 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 tggttcacatggatgtctac 114 |||||||||||||||||||| Sbjct: 27548 tggttcacatggatgtctac 27529
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 cagcaccattgacaccaacaagac 175 ||||||| |||||||||||||||| Sbjct: 114337 cagcaccgttgacaccaacaagac 114314 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,973,363 Number of Sequences: 3902068 Number of extensions: 2973363 Number of successful extensions: 49518 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49384 Number of HSP's gapped (non-prelim): 132 length of query: 565 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 542 effective length of database: 17,143,297,704 effective search space: 9291667355568 effective search space used: 9291667355568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
