ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EIN3_ARATH (O24606) ETHYLENE-INSENSITIVE3 protein 32 1.7
2GOGA4_HUMAN (Q13439) Golgin subfamily A member 4 (Trans-Golgi p2... 30 8.3

>EIN3_ARATH (O24606) ETHYLENE-INSENSITIVE3 protein|
          Length = 628

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
 Frame = -1

Query: 655 LPMDGQRSIAELMNMYDTAFPANKN---MGNDDVTIIE 551
           +P DGQ+ I+ELM+MYD    +N+    M N  V++++
Sbjct: 470 VPEDGQKMISELMSMYDRNVQSNQTSMVMENQSVSLLQ 507



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>GOGA4_HUMAN (Q13439) Golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa|
            golgin) (Golgin-245) (Protein 72.1)
          Length = 2230

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 646  DGQRSIAELMNMYDTAFPANKNMGNDDVTIIERPNSLTPGTQM 518
            D Q  + EL   Y       +N GND+VTI+E    L   T +
Sbjct: 2076 DLQTQLEELQKKYQQKLEQEENPGNDNVTIMELQTQLAQKTTL 2118


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,814,565
Number of Sequences: 219361
Number of extensions: 1158970
Number of successful extensions: 3218
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3218
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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