ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PEN2_ARATH (Q9FY84) Gamma-secretase subunit PEN2-like protein 29 3.3
2ALG9_MOUSE (Q8VDI9) Alpha-1,2-mannosyltransferase ALG9 (EC 2.4.1... 27 9.5
3ALG9_HUMAN (Q9H6U8) Alpha-1,2-mannosyltransferase ALG9 (EC 2.4.1... 27 9.5

>PEN2_ARATH (Q9FY84) Gamma-secretase subunit PEN2-like protein|
          Length = 146

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
 Frame = -2

Query: 259 VPWL---QCA*LW**RHQNQLFIGSEXKVVR*SGDAVGLYTLLSLISXWAWEWSIAXN-- 95
           +PWL    C   W     ++ F      VVR    A+G     +L+S WA  +SI     
Sbjct: 67  LPWLWFVNCFYFWPVLRHSRAFPQIRNYVVR---SAIGFSVFTALLSAWALTFSIGGEQL 123

Query: 94  FTPLYKIXHMY 62
           F PLY    MY
Sbjct: 124 FGPLYDKLVMY 134



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>ALG9_MOUSE (Q8VDI9) Alpha-1,2-mannosyltransferase ALG9 (EC 2.4.1.-)|
           (Asparagine-linked glycosylation protein 9 homolog)
           (Disrupted in bipolar disorder protein 1 homolog)
          Length = 611

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 238 MHIVAKAHWMKMEKNINLPSSLLHQYIPSELRGKL 342
           +++     W +   +  LP +   Q+IPSE RG+L
Sbjct: 464 VNVCVGKEWYRFPSSFLLPDNWQLQFIPSEFRGQL 498



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>ALG9_HUMAN (Q9H6U8) Alpha-1,2-mannosyltransferase ALG9 (EC 2.4.1.-)|
           (Asparagine-linked glycosylation protein 9 homolog)
           (Disrupted in bipolar disorder protein 1)
          Length = 611

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 238 MHIVAKAHWMKMEKNINLPSSLLHQYIPSELRGKL 342
           +++     W +   +  LP +   Q+IPSE RG+L
Sbjct: 464 VNVCVGKEWYRFPSSFLLPDNWQLQFIPSEFRGQL 498


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,019,906
Number of Sequences: 219361
Number of extensions: 718795
Number of successful extensions: 1424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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