ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_197648.1| Oryza sativa (japonica cultivar-group) putative... 42 1.1
2emb|AL954189.5| Mouse DNA sequence from clone RP23-405M24 on chr... 42 1.1
3gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 geno... 42 1.1
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
6emb|AL953842.8| Zebrafish DNA sequence from clone DKEY-33I11, co... 42 1.1
7gb|AC132833.10| Mus musculus chromosome 15, clone RP24-498G7, co... 40 4.2
8gb|AC145923.3| Pan troglodytes BAC clone RP43-10M24 from 7, comp... 40 4.2
9gb|AC158565.2| Mus musculus chromosome 15, clone RP24-354O12, co... 40 4.2
10gb|AC166092.4| Glycine max clone gmw1-93l19, complete sequence 40 4.2
11gb|AC113209.4| Homo sapiens chromosome 8, clone RP11-1002K11, co... 40 4.2
12gb|AC151737.3| Pan troglodytes BAC clone RP43-70B8 from chromoso... 40 4.2
13gb|AF274704.1| Pseudomonas diterpeniphila coenzyme A ligase (tdt... 40 4.2
14emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in... 40 4.2

>ref|NM_197648.1| Oryza sativa (japonica cultivar-group) putative aminotransferase
            (OSJNBa0082M15.2), mRNA
          Length = 1449

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 275  gcctggcccatctggaggcttgtca 299
            |||||||||||||| ||||||||||
Sbjct: 1109 gcctggcccatctgcaggcttgtca 1085



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>emb|AL954189.5| Mouse DNA sequence from clone RP23-405M24 on chromosome 4 Contains the 5'
              end of the Ptprd gene for receptor type protein tyrosine
              phosphatase D, complete sequence
          Length = 172364

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 170    agatgttttaatcaggctgag 190
              |||||||||||||||||||||
Sbjct: 120708 agatgttttaatcaggctgag 120688



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>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete
             sequence
          Length = 158550

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 275   gcctggcccatctggaggcttgtca 299
             |||||||||||||| ||||||||||
Sbjct: 58719 gcctggcccatctgcaggcttgtca 58743



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 275      gcctggcccatctggaggcttgtca 299
                |||||||||||||| ||||||||||
Sbjct: 21005672 gcctggcccatctgcaggcttgtca 21005648



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 275      gcctggcccatctggaggcttgtca 299
                |||||||||||||| ||||||||||
Sbjct: 21016936 gcctggcccatctgcaggcttgtca 21016912



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>emb|AL953842.8| Zebrafish DNA sequence from clone DKEY-33I11, complete sequence
          Length = 225654

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 165    acacaagatgttttaatcagg 185
              |||||||||||||||||||||
Sbjct: 115068 acacaagatgttttaatcagg 115048



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>gb|AC132833.10| Mus musculus chromosome 15, clone RP24-498G7, complete sequence
          Length = 154206

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  caaagattgttggctaattc 244
            ||||||||||||||||||||
Sbjct: 8286 caaagattgttggctaattc 8267



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>gb|AC145923.3| Pan troglodytes BAC clone RP43-10M24 from 7, complete sequence
          Length = 181799

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   actacaaaactcaagataca 167
             ||||||||||||||||||||
Sbjct: 41845 actacaaaactcaagataca 41826



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>gb|AC158565.2| Mus musculus chromosome 15, clone RP24-354O12, complete sequence
          Length = 150125

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   caaagattgttggctaattc 244
             ||||||||||||||||||||
Sbjct: 51988 caaagattgttggctaattc 52007



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>gb|AC166092.4| Glycine max clone gmw1-93l19, complete sequence
          Length = 51037

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   aactcaagatacacaagatg 174
             ||||||||||||||||||||
Sbjct: 48828 aactcaagatacacaagatg 48809



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>gb|AC113209.4| Homo sapiens chromosome 8, clone RP11-1002K11, complete sequence
          Length = 193991

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    atgttttaatcaggctgaga 191
              ||||||||||||||||||||
Sbjct: 111228 atgttttaatcaggctgaga 111209



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>gb|AC151737.3| Pan troglodytes BAC clone RP43-70B8 from chromosome 7, complete sequence
          Length = 212458

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    actacaaaactcaagataca 167
              ||||||||||||||||||||
Sbjct: 108998 actacaaaactcaagataca 109017



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>gb|AF274704.1| Pseudomonas diterpeniphila coenzyme A ligase (tdtL) and P450
           monooxygenase (tdtD) genes, complete cds
          Length = 9180

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  gtgatcacacaggcttcggt 43
           ||||||||||||||||||||
Sbjct: 758 gtgatcacacaggcttcggt 777



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>emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in linkage group 19,
             complete sequence
          Length = 180994

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 148   actacaaaactcaagatacacaag 171
             |||||||||||||| |||||||||
Sbjct: 49501 actacaaaactcaaaatacacaag 49524


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,831,650
Number of Sequences: 3902068
Number of extensions: 1831650
Number of successful extensions: 30463
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30434
Number of HSP's gapped (non-prelim): 29
length of query: 321
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 299
effective length of database: 17,147,199,772
effective search space: 5127012731828
effective search space used: 5127012731828
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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