Clone Name | rbasd13g11 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197648.1| Oryza sativa (japonica cultivar-group) putative aminotransferase (OSJNBa0082M15.2), mRNA Length = 1449 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 gcctggcccatctggaggcttgtca 299 |||||||||||||| |||||||||| Sbjct: 1109 gcctggcccatctgcaggcttgtca 1085
>emb|AL954189.5| Mouse DNA sequence from clone RP23-405M24 on chromosome 4 Contains the 5' end of the Ptprd gene for receptor type protein tyrosine phosphatase D, complete sequence Length = 172364 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 agatgttttaatcaggctgag 190 ||||||||||||||||||||| Sbjct: 120708 agatgttttaatcaggctgag 120688
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete sequence Length = 158550 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 275 gcctggcccatctggaggcttgtca 299 |||||||||||||| |||||||||| Sbjct: 58719 gcctggcccatctgcaggcttgtca 58743
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 gcctggcccatctggaggcttgtca 299 |||||||||||||| |||||||||| Sbjct: 21005672 gcctggcccatctgcaggcttgtca 21005648
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 gcctggcccatctggaggcttgtca 299 |||||||||||||| |||||||||| Sbjct: 21016936 gcctggcccatctgcaggcttgtca 21016912
>emb|AL953842.8| Zebrafish DNA sequence from clone DKEY-33I11, complete sequence Length = 225654 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 acacaagatgttttaatcagg 185 ||||||||||||||||||||| Sbjct: 115068 acacaagatgttttaatcagg 115048
>gb|AC132833.10| Mus musculus chromosome 15, clone RP24-498G7, complete sequence Length = 154206 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 caaagattgttggctaattc 244 |||||||||||||||||||| Sbjct: 8286 caaagattgttggctaattc 8267
>gb|AC145923.3| Pan troglodytes BAC clone RP43-10M24 from 7, complete sequence Length = 181799 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 actacaaaactcaagataca 167 |||||||||||||||||||| Sbjct: 41845 actacaaaactcaagataca 41826
>gb|AC158565.2| Mus musculus chromosome 15, clone RP24-354O12, complete sequence Length = 150125 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 caaagattgttggctaattc 244 |||||||||||||||||||| Sbjct: 51988 caaagattgttggctaattc 52007
>gb|AC166092.4| Glycine max clone gmw1-93l19, complete sequence Length = 51037 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 aactcaagatacacaagatg 174 |||||||||||||||||||| Sbjct: 48828 aactcaagatacacaagatg 48809
>gb|AC113209.4| Homo sapiens chromosome 8, clone RP11-1002K11, complete sequence Length = 193991 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 atgttttaatcaggctgaga 191 |||||||||||||||||||| Sbjct: 111228 atgttttaatcaggctgaga 111209
>gb|AC151737.3| Pan troglodytes BAC clone RP43-70B8 from chromosome 7, complete sequence Length = 212458 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 actacaaaactcaagataca 167 |||||||||||||||||||| Sbjct: 108998 actacaaaactcaagataca 109017
>gb|AF274704.1| Pseudomonas diterpeniphila coenzyme A ligase (tdtL) and P450 monooxygenase (tdtD) genes, complete cds Length = 9180 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 gtgatcacacaggcttcggt 43 |||||||||||||||||||| Sbjct: 758 gtgatcacacaggcttcggt 777
>emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in linkage group 19, complete sequence Length = 180994 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 actacaaaactcaagatacacaag 171 |||||||||||||| ||||||||| Sbjct: 49501 actacaaaactcaaaatacacaag 49524 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,831,650 Number of Sequences: 3902068 Number of extensions: 1831650 Number of successful extensions: 30463 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30434 Number of HSP's gapped (non-prelim): 29 length of query: 321 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 299 effective length of database: 17,147,199,772 effective search space: 5127012731828 effective search space used: 5127012731828 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)