ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13g10 |
|---|---|
| Clone Library Name | barley_pub |
>AMPN_ECOLI (P04825) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide| hydrolase) Length = 869 Score = 140 bits (353), Expect = 4e-33 Identities = 76/172 (44%), Positives = 105/172 (61%), Gaps = 1/172 (0%) Frame = -2 Query: 648 LALNEYKSATNMTEQFAALAALSQNPGQVREDALLDFYNKWQQDYLVVSKWFALQATSDI 469 L ++ A NMT+ AAL+A R+ + ++ +KW Q+ LV+ KWF LQATS Sbjct: 698 LVSKQFHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKWHQNGLVMDKWFILQATSPA 757 Query: 468 PGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCGS-PVSFHAKDGSGYKFLGEVVLQLDKI 292 + VR LL H +F M NPN++ SLIG F GS P +FHA+DGSGY FL E++ L+ Sbjct: 758 ANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAEDGSGYLFLVEMLTDLNSR 817 Query: 291 NPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSLA 136 NPQVASR++ R +RYD RQ +A LE + LS ++YE +K+LA Sbjct: 818 NPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLENLSGDLYEKITKALA 869
>AMPN_HAEIN (P45274) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide| hydrolase) Length = 869 Score = 131 bits (330), Expect = 2e-30 Identities = 68/171 (39%), Positives = 104/171 (60%), Gaps = 1/171 (0%) Frame = -2 Query: 648 LALNEYKSATNMTEQFAALAALSQNPGQVREDALLDFYNKWQQDYLVVSKWFALQATSDI 469 L Y +A NMT+ AAL+ ++ R+ L DF KWQ D LV+ KWFALQAT Sbjct: 698 LVQKHYNNANNMTDTLAALSVATKAALLCRDVLLADFEQKWQHDGLVMDKWFALQATRPD 757 Query: 468 PGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCGSPV-SFHAKDGSGYKFLGEVVLQLDKI 292 + ++ L+ HP+F+ NPN++ SL+G F + +FH GSGY+FL +V+++L++ Sbjct: 758 DNVLEIIQLLMDHPSFNFNNPNRLRSLVGSFANHNLKAFHNVSGSGYRFLTDVLIRLNES 817 Query: 291 NPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSL 139 NPQVA+R++ R+ R+D RQ L K LE + LS++++E K+L Sbjct: 818 NPQVAARLIEPLIRFSRFDAQRQTLMKRALERLSVVENLSKDLFEKIEKAL 868
>AMPN_CAUCR (P37893) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide| hydrolase) Length = 863 Score = 125 bits (314), Expect = 1e-28 Identities = 68/179 (37%), Positives = 99/179 (55%), Gaps = 3/179 (1%) Frame = -2 Query: 666 EPDVTELA--LNEYKSATNMTEQFAALAALSQNPGQVREDALLDFYNKWQQDYLVVSKWF 493 +P LA L + +A NMT+ L + G RE AL F++ W+ + LV+ KWF Sbjct: 684 DPHAENLARLLGHFGAARNMTDMIGGLYPMVAMGGVPREKALESFHHAWRTEPLVLDKWF 743 Query: 492 ALQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCG-SPVSFHAKDGSGYKFLGE 316 A+Q P + V L HP F+ NPN++ +L+ F +P FH G+GY FL + Sbjct: 744 AVQGRDPNPDALERVIALTQHPDFEPTNPNRLRALVSTFANFNPARFHDPSGAGYAFLAD 803 Query: 315 VVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANGLSENVYEIASKSL 139 +L++D NP A+R+V WRRY L +AQLE I++ LS+NV E+ASK+L Sbjct: 804 EILKVDAFNPMTAARLVEPLGGWRRYKPELGDLMRAQLERIVAHPNLSKNVLELASKAL 862
>AMP1_PLAFQ (O96935) M1-family aminopeptidase (EC 3.4.11.-) (Pfa-M1)| Length = 1085 Score = 68.6 bits (166), Expect = 2e-11 Identities = 36/127 (28%), Positives = 61/127 (48%) Frame = -2 Query: 537 YNKWQQDYLVVSKWFALQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCGSPVS 358 Y + D L++ +W + SD ++KL D +NPN + ++ F + Sbjct: 950 YKLSKDDELLLQEWLKTVSRSDRKDIYEILKKLENEVLKDSKNPNDIRAVYLPFTNNLRR 1009 Query: 357 FHAKDGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANG 178 FH G GYK + EV+ + DK NP VA+++ F W + D RQ L ++ ++ Sbjct: 1010 FHDISGKGYKLIAEVITKTDKFNPMVATQLCEPFKLWNKLDTKRQELMLNEMNTMLQEPN 1069 Query: 177 LSENVYE 157 +S N+ E Sbjct: 1070 ISNNLKE 1076
>POLG_PSBMV (P29152) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3206 Score = 30.4 bits (67), Expect = 5.2 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 2/105 (1%) Frame = -2 Query: 450 VRKLLAHPAFDMRNPNKVYSLIGGFCGSPVSFHAKDGSGYKFLGEVVLQLDKINPQVASR 271 +R+ + + FDM N KV+ LIG H +DG V L+++N + + Sbjct: 500 LRQRIKNTTFDMGNNTKVHELIG---------HRQDG--------VFRHLNRLNNSILAA 542 Query: 270 MVSAFSRWRRYDETRQALAKAQLEMI--ISANGLSENVYEIASKS 142 S+ W +E+ LA+ + I++ G+S +I++K+ Sbjct: 543 NGSSTIEWESMNESLLELARWHNKRTESIASGGISSFRNKISAKA 587
>CYSJ_MANSM (Q65T53) Sulfite reductase [NADPH] flavoprotein alpha-component (EC| 1.8.1.2) (SIR-FP) Length = 597 Score = 30.4 bits (67), Expect = 5.2 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -2 Query: 660 DVTELALNEYKSATNMTEQFAALAALSQNPGQVREDAL 547 +VT AL EYK+ T EQF L +Q G+ E+ + Sbjct: 90 NVTRKALKEYKAKTIGDEQFVLLVTSTQGEGEAPEEGV 127
>BMAL1_HUMAN (O00327) Aryl hydrocarbon receptor nuclear translocator-like| protein 1 (Brain and muscle ARNT-like 1) (Member of PAS protein 3) (Basic-helix-loop-helix-PAS orphan MOP3) (bHLH-PAS protein JAP3) Length = 626 Score = 29.6 bits (65), Expect = 8.9 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 14/95 (14%) Frame = +3 Query: 195 SSPTGP*QELVSSRHISSIERMLTP-----CGMPPEDLFCR------AVK---QLHPRTC 332 SS T P + L+ ++ ++ +TP C FCR +VK + P TC Sbjct: 210 SSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTC 269 Query: 333 NQNHLSRENSQVTHKSLQLKSIPCSDSACQKQDEP 437 ++ R++ H + LKS P + + +EP Sbjct: 270 SKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEP 304 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,978,280 Number of Sequences: 219361 Number of extensions: 2029142 Number of successful extensions: 5253 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 5078 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5249 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
