>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)|
            (Hemidesmosomal plaque protein) (Dystonia musculorum
            protein) (Dystonin)
          Length = 7389

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 123  RLTKETKSHMILIRDGGWLPMKEWLIR-DPHRCYHH 227
            RL +  +S +++   GGW+ + E+L++ DP R +HH
Sbjct: 7138 RLVRILRSTVMVRVGGGWMALDEFLVKNDPCRVHHH 7173

>YNQA_CAEEL (Q21986) Hypothetical protein R13F6.10 in chromosome III|
          Length = 958

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 9   CRRTTTDQKKLINCNQRIFPTSYNQHNVATTYNIYVLPRLTKE-TKSHMILIRDGGWLPM 185
           C R +    K++   +RI     ++HN+   +  Y   ++ KE  K  M L +D G  P 
Sbjct: 87  CYRDSNQHMKVVTLYERIIQVDPSEHNLTQLFMAYSREKMYKEQQKIGMRLYKDFGNAPY 146

Query: 186 KEWLI 200
             W +
Sbjct: 147 YFWSV 151

>HIS7_PICPA (Q92447) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)|
           (IGPD)
          Length = 224

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = +3

Query: 114 VLPRLTKETKSHMILIRDGGWLPMKEWLIRDPHRCYHHHLLFFSSNCPCVFTLSGISDSE 293
           ++ R+T ETK  + L  DGG + + + L +D      H     SS    V T  G  D  
Sbjct: 10  LIKRITNETKIQIALSLDGGPVSLAQSLFKDKDYSAEHAAQATSSQFISVNTGIGFLDHM 69

Query: 294 DHRCA 308
            H  A
Sbjct: 70  LHALA 74

>POLG_RTSVT (Q91PP5) Genome polyprotein [Contains: Putative leader protein; Coat|
            protein 1 (25 kDa protein) (CP-1); Coat protein 2 (26 kDa
            protein) (CP-2); Coat protein 3 (35 kDa protein) (CP-3);
            Putative helicase (EC 3.6.1.-) (Putative NTP-binding
            protei
          Length = 3471

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 156  LIRDGGWLPMKEWLIRDPHRCYHHHLLFFSSNC 254
            ++RDG    + EW I  P     H LL F+  C
Sbjct: 2060 ILRDGSGCYIDEWAIAGPRWLSFHELLPFTCGC 2092

>DOK6_HUMAN (Q6PKX4) Docking protein 6 (Downstream of tyrosine kinase 6)|
          Length = 331

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 78  NQHNVATTYNIYVLPRLTKETKSHMILI 161
           N H V   +NI  + RL +ETK H + I
Sbjct: 55  NFHKVTELHNIKNITRLPRETKKHAVAI 82

>POLG_RTSVA (Q83034) Genome polyprotein [Contains: Putative leader protein; Coat|
            protein 1 (25 kDa protein) (CP-1); Coat protein 2 (26 kDa
            protein) (CP-2); Coat protein 3 (35 kDa protein) (CP-3);
            Putative helicase (EC 3.6.1.-) (Putative NTP-binding
            protei
          Length = 3473

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 156  LIRDGGWLPMKEWLIRDPHRCYHHHLLFFSSNC 254
            ++RDG    + EW I  P     H LL F+  C
Sbjct: 2063 ILRDGSGCYIDEWAIAGPRWLSFHELLPFTCGC 2095


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,116,279
Number of Sequences: 219361
Number of extensions: 836903
Number of successful extensions: 2001
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2001
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)