>AFG32_HUMAN (Q9Y4W6) AFG3-like protein 2 (EC 3.4.24.-) (Paraplegin-like|
           protein)
          Length = 797

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = -3

Query: 494 VALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLFKQ--GFQDEEGKTAEPTKD 327
           V  +A LLLEKEVL ++D+  +LG RPF  AE + Y+ F +  G  DE+    E  KD
Sbjct: 723 VEKVALLLLEKEVLDKNDMVELLGPRPF--AEKSTYEEFVEGTGSLDEDTSLPEGLKD 778

>AFG31_MOUSE (Q920A7) AFG3-like protein 1 (EC 3.4.24.-)|
          Length = 663

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 24/55 (43%), Positives = 32/55 (58%)
 Frame = -3

Query: 500 EQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKTAEP 336
           EQV  +   LLEKEVL + D+  +LG RPF  AE + Y+ F +G    E  T+ P
Sbjct: 587 EQVEKVGRRLLEKEVLEKADMIELLGPRPF--AEKSTYEEFVEGTGSLEEDTSLP 639

>AF3G2_MOUSE (Q8JZQ2) AFG3-like protein 2 (EC 3.4.24.-)|
          Length = 802

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 24/61 (39%), Positives = 36/61 (59%)
 Frame = -3

Query: 494 VALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKTAEPTKDTEVP 315
           V  +A LLLEKEVL ++D+ ++LG RPF   E + Y+ F +G       T    +DT +P
Sbjct: 722 VEKVALLLLEKEVLDKNDMVQLLGPRPF--TEKSTYEEFVEG-------TGSLDEDTSLP 772

Query: 314 D 312
           +
Sbjct: 773 E 773

>RCA1_YEAST (P40341) Mitochondrial respiratory chain complexes assembly protein|
           RCA1 (EC 3.4.24.-) (TAT-binding homolog 12)
          Length = 825

 Score = 35.4 bits (80), Expect = 0.086
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
 Frame = -3

Query: 500 EQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAE------LTNYDLFKQGFQDEEG-KTA 342
           E V  IA++LL+KEVL ++D+  +LG RPF          L +Y+  K   ++E+  K  
Sbjct: 759 EDVEKIAQVLLKKEVLTREDMIDLLGKRPFPERNDAFDKYLNDYETEKIRKEEEKNEKRN 818

Query: 341 EPTKDT 324
           EP   T
Sbjct: 819 EPKPST 824

>CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD6) (CHD-6) (Radiation-induced
            gene B protein)
          Length = 2715

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = +1

Query: 13   KTFGDANTSSEHEPRPAAHRTEQQGQASCGKPSASLPANK 132
            KT GD N +S  EP P+  R E  G  +C +PSA LPA +
Sbjct: 2659 KTKGD-NPNSHPEPAPSCER-EPSGDENCAEPSAPLPAER 2696

>ATRX_DROME (Q9GQN5) Transcriptional regulator ATRX homolog (EC 3.6.1.-)|
           (ATP-dependent helicase XNP) (X-linked nuclear protein)
           (dXNP) (d-xnp)
          Length = 1311

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 382 SSSRGSRTKRARPQSPPRTPRCLMTMDRLCSP 287
           SS R SR   +R +SPPR  RC++ + R+  P
Sbjct: 224 SSERSSRASSSRAESPPRPKRCVVRLKRVSLP 255

>UL61_HCMVA (P16818) Hypothetical protein UL61|
          Length = 431

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 474 AAREGGPPPGRSDQGIRRPPLQGSRA---NKL*PLQAGVPGRRGQDRRAHQGHRG 319
           AAR+ GP PG    G  +PPL   RA   N+     AGVP R G+      G RG
Sbjct: 256 AARDPGPEPGEERGGGGKPPLGSPRATDGNR--DPGAGVPARPGRRMGGSSGGRG 308

>DPO3A_MYCTU (P63977) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1184

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = -3

Query: 458  VLHQDDLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKTAEPTKDTEVPDDD 306
            ++H D +  VLG +  KA  L  +DLF  G  D+   TA+P    +VPDD+
Sbjct: 926  LVHSDAVDSVLGTK--KAEALGQFDLF--GSNDDGTGTADPVFTIKVPDDE 972

>DPO3A_MYCBO (P63978) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1184

 Score = 33.5 bits (75), Expect = 0.33
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = -3

Query: 458  VLHQDDLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKTAEPTKDTEVPDDD 306
            ++H D +  VLG +  KA  L  +DLF  G  D+   TA+P    +VPDD+
Sbjct: 926  LVHSDAVDSVLGTK--KAEALGQFDLF--GSNDDGTGTADPVFTIKVPDDE 972

>HCN1_HUMAN (O60741) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 1 (Brain cyclic nucleotide
           gated channel 1) (BCNG-1)
          Length = 890

 Score = 32.0 bits (71), Expect = 0.95
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -1

Query: 418 APSRQPS*QTMTS-SSRGSRTKRARPQSPPRTPRCLMTMDRLCSPTSSCRRRNPARRLHS 242
           AP   P   T+ S SS  + T R R QSPP      ++   L SP+ S +   P+  L  
Sbjct: 637 APINYPQMTTLNSTSSTTTPTSRMRTQSPPVYTATSLSHSNLHSPSPSTQTPQPSAILSP 696

Query: 241 CTW 233
           C++
Sbjct: 697 CSY 699

>COCA1_RAT (P70560) Collagen alpha-1(XII) chain (Fragment)|
          Length = 317

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -2

Query: 480 GVAAREGGPPPGRSDQGIRRPPLQGSRANKL*PLQAGVPGRRGQDRRAHQGHRG 319
           G A   G P PG +     RP +QG       P + G+PG +G+     QG RG
Sbjct: 150 GAAGARGEPGPGGAPGFPGRPGVQGP------PGERGLPGEKGERGIGSQGPRG 197

>VRK2_MOUSE (Q8BN21) Serine/threonine-protein kinase VRK2 (EC 2.7.11.1)|
           (Vaccinia-related kinase 2)
          Length = 503

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
 Frame = -1

Query: 394 QTMTSSSRGSRTKR--------ARPQSPPRTPRCLMTMDRLCSPTSSCRRRNPARRLHSC 239
           Q+  ++   SRT++        +  QS  +TP  +      C P   C RR+P R+  S 
Sbjct: 384 QSRPAAPENSRTRKIHEYSDIFSEMQSLQQTPSYMSFQGSYCKPYLDCTRRDPIRKPRSL 443

Query: 238 TWHAHHP 218
             + H P
Sbjct: 444 PRYRHTP 450

>ASIP_CANFA (Q5UK76) Agouti signaling protein precursor (ASP) (Agouti switch|
           protein)
          Length = 131

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 412 SRQPS*QTMTSSSRGSRTKRARPQSPPRTPRCLMTMDRLCSPTSSC 275
           SR+ + +  +S  + S    ARP+ PP TP C+ T +   SP  +C
Sbjct: 62  SRKEAEKKRSSKKKASMKNVARPRPPPPTP-CVATRNSCKSPAPAC 106

>MRE11_ARATH (Q9XGM2) Double-strand break repair protein MRE11|
          Length = 720

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -3

Query: 491 ALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKTAEPTKDTEVPD 312
           AL+AE  L+ E+L  +DL   L +   K  +L  Y   +   Q+  GK A+ +   +  +
Sbjct: 428 ALVAESNLKMEILPVNDLDVALHNFVNKDDKLAFYSCVQYNLQETRGKLAKDSDAKKFEE 487

Query: 311 DD 306
           DD
Sbjct: 488 DD 489

>HCN1_RABIT (Q9MZS1) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 1 (rbHCN1)
          Length = 822

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -1

Query: 418 APSRQPS*QTMTS-SSRGSRTKRARPQSPPRTPRCLMTMDRLCSPTSSCRRRNPARRLHS 242
           AP   P    + S SS  + T R R QSPP      ++   L SP+ S +   P+  L  
Sbjct: 573 APISYPQMTALNSTSSTATPTSRMRTQSPPVYTATSLSHSNLHSPSPSTQTPQPSAILSP 632

Query: 241 CTW 233
           C++
Sbjct: 633 CSY 635

>SPG7_HUMAN (Q9UQ90) Paraplegin (EC 3.4.24.-) (Spastic paraplegia protein 7)|
          Length = 795

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 14/62 (22%), Positives = 34/62 (54%)
 Frame = -3

Query: 500 EQVALIAELLLEKEVLHQDDLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKTAEPTKDTE 321
           +++  +A  LLEKEV++ +D+  ++G  P    ++     +    ++++    E T++T+
Sbjct: 723 DKLQALANALLEKEVINYEDIEALIGPPPHGPKKMIAPQRWIDAQREKQDLGEEETEETQ 782

Query: 320 VP 315
            P
Sbjct: 783 QP 784

>VGLE_PRVRI (P08354) Glycoprotein GI precursor|
          Length = 577

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 334 PRTPRCLMTMDRLCSPTSSCRRRNPARRLH-SCT 236
           PR P CL  +D  CS TS  R    ARR + SC+
Sbjct: 287 PRAPECLRPVDPACSFTSPARAALVARRAYASCS 320

>COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor|
          Length = 674

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -2

Query: 483 RGVAAREG--GPPPGRSDQGIRRPPLQGSRANKL*PLQAGVPGRRGQ 349
           RG A   G  GPP  +  +GI +P   G       P Q G+PG +GQ
Sbjct: 243 RGAAGPSGPQGPPGEQGPEGIGKPGAPGI------PGQPGIPGMKGQ 283

>F112A_BOVIN (Q3T026) Protein FAM112A|
          Length = 169

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 334 PRTPRCLMTMDRLCSPTSSCRRRNP--ARRLHSCTWHAHHPI 215
           P  P   + + R     +SCRR+NP  A+++ SC ++A H +
Sbjct: 10  PYNPHHRIPLSRFQYHLASCRRKNPKKAKKMASCKYNACHVV 51

>CAD23_HUMAN (Q9H251) Cadherin-23 precursor (Otocadherin)|
          Length = 3354

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 131  NKTGMTDLDEGADLYSFYFLCCNNKTRIYRMMSMPCTAV 247
            N TG  D DEG +   +YF+   N+ + + +    C  V
Sbjct: 2749 NVTGAVDADEGPNAIVYYFIAAGNEEKNFHLQPDGCLLV 2787

>GYRB_MYXXA (O33367) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 815

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = -1

Query: 364 RTKRARPQSPPRTPRCLMTMDRLCSPTSSCRRRNPARRLHSCTWHAHH 221
           RT    P+S   TP  +    R CS T SCRRR+      SC   A H
Sbjct: 664 RTPSTTPRSWCSTPTRMEPCGRRCSTTPSCRRRS----TWSCRLCAEH 707

>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -2

Query: 471 AREGGPPPGRSDQGIRRPPLQGSRANKL*PLQAGVPGRRGQDRRAHQG 328
           AR G P PGR  Q   R   + +R  +    Q+    RR  DRR +QG
Sbjct: 113 ARPGMPTPGRHGQNDNRENGRDNREGRENGRQSRPNDRRNNDRRNNQG 160

>V70K_OYMV (P20130) 66 kDa protein|
          Length = 597

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
 Frame = -1

Query: 379 SSRGSRTKRARPQSPPRTPRC--LMTMDRLCSPTSSCRRRNPARRLHSCTWHAHHPIDS 209
           SS   R    RP SPP+            LCS  S CR+  P  R +       HP+ S
Sbjct: 172 SSCSPRKLLHRPLSPPKPLHLHNFRQHSSLCSRRSPCRKLRPTPRCNQLAQAQQHPLPS 230

>FBRL_GIALA (Q24957) Fibrillarin|
          Length = 327

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 483 RGVAAREGGPPPGRSDQGIRRPPLQG 406
           RG   R G  PPG  D+G RR P  G
Sbjct: 49  RGFGDRRGSGPPGGPDRGDRRGPRDG 74

>RBP1_RAT (Q62796) RalA-binding protein 1 (RalBP1) (Ral-interacting protein|
           1) (Cytocentrin) (Dinitrophenyl S-glutathione ATPase)
           (DNP-SG ATPase)
          Length = 646

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -3

Query: 464 KEVLHQDDLTRVLGDRPFKAAELTNYDLFKQGFQDEEGKTAEPTKDTEVPDDDGSAVLP 288
           KE  H+++  +    +  K  + T  D+ KQ    E+ K  +PT++ EVP  D  ++ P
Sbjct: 131 KEEKHKEEKHKEEKHKEKKCKDFTAADVVKQW--KEKKKKKKPTQEPEVPQTDAPSLRP 187

>HCN1_RAT (Q9JKB0) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 1
          Length = 910

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 382 SSSRGSRTKRARPQSPPRTPRCLMTMDRLCSPTSSCRRRNPARRLHSCTW 233
           +SS  + T R R QSPP      ++   L SP+ S +   P+  L  C++
Sbjct: 639 TSSTTTPTSRMRTQSPPVYTATSLSHSNLHSPSPSTQTPQPSAILSPCSY 688

>HCN1_MOUSE (O88704) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 1 (Brain cyclic nucleotide
           gated channel 1) (BCNG-1) (Hyperpolarization-activated
           cation channel 2) (HAC-2)
          Length = 910

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 382 SSSRGSRTKRARPQSPPRTPRCLMTMDRLCSPTSSCRRRNPARRLHSCTW 233
           +SS  + T R R QSPP      ++   L SP+ S +   P+  L  C++
Sbjct: 639 TSSTTTPTSRMRTQSPPVYTATSLSHSNLHSPSPSTQTPQPSAILSPCSY 688

>COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor|
          Length = 3119

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -2

Query: 480  GVAAREGGPPPGRSDQGIRRPPLQGSRANKL*PLQAGVPGRRGQDRRAHQGHRG 319
            G A   G P PG       RP   G+   +  P + G+PG +G+     QG RG
Sbjct: 2952 GSAGARGEPGPG------GRPGFPGTPGMQGPPGERGLPGEKGERGTGSQGPRG 2999

>BCL9_HUMAN (O00512) B-cell lymphoma 9 protein (Bcl-9) (Legless homolog)|
          Length = 1426

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 421 TAPSRQPS*QTMTSSSRGSRTKRARPQSPPRTP 323
           T P+  P+ + +T  S+GS +  A P++PP  P
Sbjct: 303 TGPNSTPNNRAVTPVSQGSNSSSADPKAPPPPP 335

>PP1RA_XENLA (Q6GLQ4) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10
          Length = 819

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -2

Query: 480 GVAAREGGPPPGRSDQGIRRPPLQGSRANKL*PLQAGVPGRRGQDRRAHQGHRG 319
           G+   + GPPP         PP   +R  +      G PG RG+ R   +GH G
Sbjct: 710 GMRGGDRGPPP---------PPFHRNRGGR-----GGEPGYRGRGRGGERGHPG 749

>BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9)|
          Length = 1425

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 421 TAPSRQPS*QTMTSSSRGSRTKRARPQSPPRTP 323
           T P+  P+ + +T  S+GS +  A P++PP  P
Sbjct: 303 TGPNSTPNNRAVTPVSQGSNSSSADPKAPPPPP 335

>ASIP_VULVU (P79407) Agouti signaling protein precursor (ASP) (Agouti switch|
           protein)
          Length = 131

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 412 SRQPS*QTMTSSSRGSRTKRARPQSPPRTPRCLMTMDRLCSPTSSC 275
           SR+ + +  +S  + S    ARP+ PP  P C+ T +   SP  +C
Sbjct: 62  SRKEAEKKRSSKKKASMKNVARPRPPPPNP-CVATRNSCKSPAPAC 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,628,736
Number of Sequences: 219361
Number of extensions: 1408073
Number of successful extensions: 4799
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 4431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4781
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)