ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_627368.1| Cryptosporidium parvum Iowa II hypothetical pro... 48 0.013
2ref|XM_660787.1| Cryptosporidium hominis TU502 Myb-like DNA-bind... 42 0.81
3emb|CR962120.1|PTB065B04 Pan troglodytes chromosome X BAC PTB-06... 42 0.81
4gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 42 0.81
5gb|AC023702.4| Drosophila melanogaster X BAC RP98-24L2 (Roswell ... 42 0.81
6gb|AC105150.2| Homo sapiens chromosome 8, clone RP11-328K2, comp... 42 0.81
7gb|AC130390.4| Drosophila melanogaster X BAC RP98-21O19 (Roswell... 42 0.81
8gb|AE003448.4| Drosophila melanogaster chromosome X, section 32 ... 42 0.81
9emb|AL021046.4|SPAC3G9 S.pombe chromosome I cosmid c3G9 40 3.2
10ref|XM_309208.2| Anopheles gambiae str. PEST ENSANGP00000005397 ... 40 3.2

>ref|XM_627368.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_4840),
            partial mRNA
          Length = 7230

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 186  gaagttgaagttgtagctgttgat 209
            ||||||||||||||||||||||||
Sbjct: 6802 gaagttgaagttgtagctgttgat 6779



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>ref|XM_660787.1| Cryptosporidium hominis TU502 Myb-like DNA-binding domain
            (Chro.80556) partial mRNA
          Length = 5922

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 186  gaagttgaagttgtagctgttgatg 210
            |||| ||||||||||||||||||||
Sbjct: 5524 gaagctgaagttgtagctgttgatg 5500



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>emb|CR962120.1|PTB065B04 Pan troglodytes chromosome X BAC PTB-065B04, complete sequence
          Length = 35005

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 111   attgatgataattaagataaa 131
             |||||||||||||||||||||
Sbjct: 24109 attgatgataattaagataaa 24129



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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 114    gatgataattaagataaagcg 134
              |||||||||||||||||||||
Sbjct: 319934 gatgataattaagataaagcg 319914



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>gb|AC023702.4| Drosophila melanogaster X BAC RP98-24L2 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 159970

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 180    agtgtcgaagttgaagttgtagctg 204
              ||||||||||||||||||| |||||
Sbjct: 118453 agtgtcgaagttgaagttgaagctg 118429



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>gb|AC105150.2| Homo sapiens chromosome 8, clone RP11-328K2, complete sequence
          Length = 201000

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 60     aagatactacgttgtttcctctcca 84
              |||||||||| ||||||||||||||
Sbjct: 145781 aagatactaccttgtttcctctcca 145757



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>gb|AC130390.4| Drosophila melanogaster X BAC RP98-21O19 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 184175

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 180   agtgtcgaagttgaagttgtagctg 204
             ||||||||||||||||||| |||||
Sbjct: 59958 agtgtcgaagttgaagttgaagctg 59934



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>gb|AE003448.4| Drosophila melanogaster chromosome X, section 32 of 74 of the complete
             sequence
          Length = 318665

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 180   agtgtcgaagttgaagttgtagctg 204
             ||||||||||||||||||| |||||
Sbjct: 86847 agtgtcgaagttgaagttgaagctg 86823



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>emb|AL021046.4|SPAC3G9 S.pombe chromosome I cosmid c3G9
          Length = 38096

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 63    atactacgttgtttcctctccatc 86
             |||||||||||||| |||||||||
Sbjct: 13853 atactacgttgtttactctccatc 13876



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>ref|XM_309208.2| Anopheles gambiae str. PEST ENSANGP00000005397 (ENSANGG00000004156),
            partial mRNA
          Length = 7809

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 194  agttgtagctgttgatgccg 213
            ||||||||||||||||||||
Sbjct: 2962 agttgtagctgttgatgccg 2943


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,462,917
Number of Sequences: 3902068
Number of extensions: 1462917
Number of successful extensions: 26379
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26357
Number of HSP's gapped (non-prelim): 22
length of query: 248
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 226
effective length of database: 17,147,199,772
effective search space: 3875267148472
effective search space used: 3875267148472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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