Clone Name | rbasd13f06 |
---|---|
Clone Library Name | barley_pub |
>gb|AY220738.1| Hordeum vulgare putative protease inhibitor (SD10) mRNA, complete cds Length = 509 Score = 180 bits (91), Expect = 3e-42 Identities = 118/127 (92%) Strand = Plus / Minus Query: 268 tgaggtccggccggtccgccttgatcttctctctcgcctcctcgatcgtgcgcccgacca 327 |||||||||||||||||||||||||||| ||| | ||||||| |||||||| |||||||| Sbjct: 175 tgaggtccggccggtccgccttgatcttttctttggcctccttgatcgtgcacccgacca 116 Query: 328 gctcaggccactccgtcttgggaccgtcgcatggtttgctcatgttggaaacaaaatggg 387 ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| Sbjct: 115 gctcaggccactccgtcttggcaccgtcgcatgacttgctcatgttggaaacgaaatggg 56 Query: 388 acaaacg 394 ||||||| Sbjct: 55 acaaacg 49
>emb|Y08625.1|HVSCI2 H.vulgare mRNA for subtilisin-chymotrypsin inhibitor 2 Length = 549 Score = 180 bits (91), Expect = 3e-42 Identities = 118/127 (92%) Strand = Plus / Minus Query: 268 tgaggtccggccggtccgccttgatcttctctctcgcctcctcgatcgtgcgcccgacca 327 |||||||||||||||||||||||||||| ||| | ||||||| |||||||| |||||||| Sbjct: 159 tgaggtccggccggtccgccttgatcttttctttggcctccttgatcgtgcacccgacca 100 Query: 328 gctcaggccactccgtcttgggaccgtcgcatggtttgctcatgttggaaacaaaatggg 387 ||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||| Sbjct: 99 gctcaggccactccgtcttggcaccgtcgcatgacttgctcatgttggaaacgaaatggg 40 Query: 388 acaaacg 394 ||||||| Sbjct: 39 acaaacg 33
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.099 Identities = 59/71 (83%) Strand = Plus / Plus Query: 279 cggtccgccttgatcttctctctcgcctcctcgatcgtgcgcccgaccagctcaggccac 338 ||||| || ||||||||||| | ||||||| |||||| || | || ||||| |||||| Sbjct: 24387212 cggtctgctttgatcttctccttggcctccttgatcgtccggcaaactagctcgggccac 24387271 Query: 339 tccgtcttggg 349 ||||||||||| Sbjct: 24387272 tccgtcttggg 24387282
>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E01 Length = 166753 Score = 46.1 bits (23), Expect = 0.099 Identities = 59/71 (83%) Strand = Plus / Plus Query: 279 cggtccgccttgatcttctctctcgcctcctcgatcgtgcgcccgaccagctcaggccac 338 ||||| || ||||||||||| | ||||||| |||||| || | || ||||| |||||| Sbjct: 133116 cggtctgctttgatcttctccttggcctccttgatcgtccggcaaactagctcgggccac 133175 Query: 339 tccgtcttggg 349 ||||||||||| Sbjct: 133176 tccgtcttggg 133186
>emb|AL627166.6| Mouse DNA sequence from clone RP23-59N8 on chromosome 4, complete sequence Length = 237007 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Plus Query: 51 catacatttttcaggtcataccc 73 ||||||||||||||||||||||| Sbjct: 155964 catacatttttcaggtcataccc 155986
>emb|CT030417.1| Xenopus tropicalis finished cDNA, clone TEgg077h01 Length = 1513 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 aactcacaacaaaacaacatg 38 ||||||||||||||||||||| Sbjct: 1100 aactcacaacaaaacaacatg 1080
>emb|AL162571.9| Human DNA sequence from clone RP11-159J2 on chromosome 13 Contains a meningioma expressed antigen 6 (coiled-coil proline-rich) (MGEA6) pseudogene, a novel gene and the 3' end of the TBC1D4 gene for TBC1 domain family, member 4 (KIAA0603), complete sequence Length = 158310 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 agacttgcatgggtctttatt 133 ||||||||||||||||||||| Sbjct: 6192 agacttgcatgggtctttatt 6172
>ref|NM_001016862.2| Xenopus tropicalis islet cell autoantigen 1, 69kDa (ica1), mRNA Length = 2224 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 aactcacaacaaaacaacatg 38 ||||||||||||||||||||| Sbjct: 1812 aactcacaacaaaacaacatg 1792
>emb|CR848653.2| Xenopus tropicalis finished cDNA, clone TGas051g12 Length = 2224 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 aactcacaacaaaacaacatg 38 ||||||||||||||||||||| Sbjct: 1812 aactcacaacaaaacaacatg 1792
>emb|AL935028.14| Zebrafish DNA sequence from clone XX-95K20, complete sequence Length = 78340 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 cacaacaaaacaacatgacat 42 ||||||||||||||||||||| Sbjct: 72936 cacaacaaaacaacatgacat 72956
>gb|BC068961.1| Xenopus laevis hypothetical protein MGC83241, mRNA (cDNA clone MGC:83241 IMAGE:6636263), complete cds Length = 2179 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 caactcacaacaaaacaaca 36 |||||||||||||||||||| Sbjct: 1826 caactcacaacaaaacaaca 1807
>emb|AL354738.13| Human DNA sequence from clone RP11-628O6 on chromosome 9 Contains part of a novel gene (FLJ20276), complete sequence Length = 64981 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 atacatttttcaggtcatac 71 |||||||||||||||||||| Sbjct: 29610 atacatttttcaggtcatac 29629
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 tttgctcatgttggaaacaa 381 |||||||||||||||||||| Sbjct: 3280481 tttgctcatgttggaaacaa 3280462
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 gacgcgcttctcgttgaagtcaag 232 |||||||||| ||||||||||||| Sbjct: 152609 gacgcgcttcacgttgaagtcaag 152586
>dbj|AK120100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022J17, full insert sequence Length = 2018 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 tttgctcatgttggaaacaa 381 |||||||||||||||||||| Sbjct: 693 tttgctcatgttggaaacaa 674
>ref|XM_316648.2| Anopheles gambiae str. PEST ENSANGP00000011462 (ENSANGG00000008973), partial mRNA Length = 1680 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ctctctcgcctcctcgatcg 315 |||||||||||||||||||| Sbjct: 384 ctctctcgcctcctcgatcg 365
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 tttgctcatgttggaaacaa 381 |||||||||||||||||||| Sbjct: 3280426 tttgctcatgttggaaacaa 3280407
>emb|AL935126.18| Zebrafish DNA sequence from clone CH211-186J3, complete sequence Length = 174986 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 atgatgtggagacttgcatg 123 |||||||||||||||||||| Sbjct: 21710 atgatgtggagacttgcatg 21729
>emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109081 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 tttgctcatgttggaaacaa 381 |||||||||||||||||||| Sbjct: 70867 tttgctcatgttggaaacaa 70848 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,720,051 Number of Sequences: 3902068 Number of extensions: 3720051 Number of successful extensions: 70915 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70779 Number of HSP's gapped (non-prelim): 136 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)