ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13e16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RPOD_ANASP (P26683) RNA polymerase sigma factor rpoD (Sigma-A) 91 2e-18
2RPOD_MICAE (P52322) RNA polymerase sigma factor rpoD1 88 1e-17
3RPOD_SYNY3 (P74565) RNA polymerase sigma factor rpoD 88 1e-17
4RPOD_STRR6 (P0A4J0) RNA polymerase sigma factor rpoD 86 7e-17
5RPOD_STRPN (P0A4I9) RNA polymerase sigma factor rpoD 86 7e-17
6RPOD_SYNP7 (P38023) RNA polymerase sigma factor rpoD1 86 9e-17
7RPOD_STRMU (O33662) RNA polymerase sigma factor rpoD (Sigma-42) 85 1e-16
8RPOD_ENTFA (P52329) RNA polymerase sigma factor rpoD (Sigma-42) 84 2e-16
9RPSD2_BACSP (P52328) RNA polymerase sigma factor rpoD (Sigma-A) 83 6e-16
10RPOD_BACSU (P06224) RNA polymerase sigma factor rpoD (Sigma-A) (... 82 8e-16
11RPOD_LISMO (P52331) RNA polymerase sigma factor rpoD (Sigma-43) 82 1e-15
12RPOD_LISIN (Q92BQ6) RNA polymerase sigma factor rpoD (Sigma-43) 82 1e-15
13RPOD_THEMA (P77994) RNA polymerase sigma factor rpoD (Sigma-A) 82 1e-15
14RPOD_CLOAB (P33656) RNA polymerase sigma factor rpoD (Sigma-A) (... 82 1e-15
15RPSC_SYNY3 (Q59996) Probable RNA polymerase sigma-C factor 81 2e-15
16RPOD_BACHD (O66381) RNA polymerase sigma factor rpoD (Sigma-A) (... 81 2e-15
17RPOD_STAES (Q8CP24) RNA polymerase sigma factor rpoD 80 3e-15
18RPOD_STAEQ (Q5HNY7) RNA polymerase sigma factor rpoD 80 3e-15
19RPOD_STAAW (P0A0I9) RNA polymerase sigma factor rpoD 80 3e-15
20RPOD_STAAU (P0A0J0) RNA polymerase sigma factor rpoD 80 3e-15
21RPOD_STAAS (Q6G905) RNA polymerase sigma factor rpoD 80 3e-15
22RPOD_STAAR (Q6GGD8) RNA polymerase sigma factor rpoD 80 3e-15
23RPOD_STAAN (Q99TT5) RNA polymerase sigma factor rpoD 80 3e-15
24RPOD_STAAM (P0A0I8) RNA polymerase sigma factor rpoD 80 3e-15
25RPOD_STAAC (Q5HFJ9) RNA polymerase sigma factor rpoD 80 3e-15
26RPOD_LACLA (Q04506) RNA polymerase sigma factor rpoD (Sigma-42) 79 9e-15
27RPOD_LACLC (P58290) RNA polymerase sigma factor rpoD (Sigma-42) ... 79 9e-15
28RPSC_ANASP (Q03066) RNA polymerase sigma-C factor 77 3e-14
29HRDA_STRCO (P18182) RNA polymerase principal sigma factor hrdA 74 2e-13
30RPOD_CHLPN (Q9Z7F0) RNA polymerase sigma factor rpoD (Sigma-70) ... 72 8e-13
31RPOD_HELPJ (Q9ZMY3) RNA polymerase sigma factor rpoD (Sigma-70) 72 1e-12
32RPOD_HELPY (P55993) RNA polymerase sigma factor rpoD (Sigma-70) 72 1e-12
33RPOD_MYCTU (P0A602) RNA polymerase sigma factor rpoD (Sigma-A) 72 1e-12
34RPOD_MYCBO (P0A603) RNA polymerase sigma factor rpoD (Sigma-A) 72 1e-12
35RPSB_CORDI (P33118) RNA polymerase sigma factor sigB 72 1e-12
36RPOD_CHLMU (P56835) RNA polymerase sigma factor rpoD (Sigma-70) ... 71 2e-12
37RPOD_BORBU (P52323) RNA polymerase sigma factor rpoD (Sigma-70) 70 3e-12
38RPOD_CHLTR (P18333) RNA polymerase sigma factor rpoD (Sigma-70) ... 70 4e-12
39RPOD_STRAU (P27785) RNA polymerase sigma factor rpoD 69 9e-12
40RPOD_LEPIN (P59117) RNA polymerase sigma factor rpoD 69 1e-11
41RPOD_LEPIC (P61540) RNA polymerase sigma factor rpoD 69 1e-11
42RPOD_TREPA (O83506) RNA polymerase sigma factor rpoD (Sigma-A) (... 69 1e-11
43RPOD_XYLFT (Q87DT7) RNA polymerase sigma factor rpoD (Sigma-70) 68 2e-11
44RPOD_XYLFA (Q9PDM9) RNA polymerase sigma factor rpoD (Sigma-70) 68 2e-11
45RPOD_MYXXA (P17531) RNA polymerase sigma factor rpoD (Sigma-80) 67 3e-11
46HRDB_STRGR (P77951) RNA polymerase principal sigma factor hrdB 67 3e-11
47HRDB_STRCO (P18183) RNA polymerase principal sigma factor hrdB 67 3e-11
48RPOD_HAEIN (P43766) RNA polymerase sigma factor rpoD (Sigma-70) 66 8e-11
49RPOD_NEIGO (P52325) RNA polymerase sigma factor rpoD (Sigma-70) 65 1e-10
50RPOD_XANCP (Q8P4H2) RNA polymerase sigma factor rpoD (Sigma-70) 65 1e-10
51RPOD_XANAC (Q8PG33) RNA polymerase sigma factor rpoD (Sigma-70) 65 1e-10
52HRDD_STRCO (P18249) RNA polymerase principal sigma factor hrdD 65 2e-10
53RPOD_RHOCA (P46400) RNA polymerase sigma factor rpoD (Sigma-70) 64 2e-10
54RPOD_RHIME (Q59753) RNA polymerase sigma factor rpoD (Sigma-A) (... 63 5e-10
55RPOD_AGRT5 (P33452) RNA polymerase sigma factor rpoD (Sigma-A) (... 63 5e-10
56RPOD_CAUCR (P52324) RNA polymerase sigma factor rpoD (Sigma-70) 63 5e-10
57HRDD_STRVF (Q60012) RNA polymerase principal sigma factor hrdD 61 2e-09
58RPOD_PSEAE (P26480) RNA polymerase sigma factor rpoD (Sigma-70) 61 2e-09
59RPOS_SHIFL (P35540) RNA polymerase sigma factor rpoS 60 3e-09
60RPOS_SALTY (P0A2E5) RNA polymerase sigma factor rpoS (Sigma-38) 60 3e-09
61RPOS_SALTI (P0A2E6) RNA polymerase sigma factor rpoS (Sigma-38) 60 3e-09
62RPOS_SALDU (P0A2E7) RNA polymerase sigma factor rpoS (Sigma-38) 60 3e-09
63RPOS_ECOLI (P13445) RNA polymerase sigma factor rpoS (Sigma-38) 60 3e-09
64RPOD_PSEFL (P52326) RNA polymerase sigma factor rpoD (Sigma-70) 60 3e-09
65RPSB_ANASP (Q03065) RNA polymerase sigma-B factor 60 3e-09
66RPOD_PSEPU (P52327) RNA polymerase sigma factor rpoD (Sigma-70) 60 4e-09
67HRDD_STRGR (Q59914) RNA polymerase principal sigma factor hrdD 60 5e-09
68RPOS_YEREN (P47765) RNA polymerase sigma factor rpoS 60 5e-09
69RPOD_BUCBP (Q89B10) RNA polymerase sigma factor rpoD (Sigma-70) 60 5e-09
70RPOD_BUCAP (P32001) RNA polymerase sigma factor rpoD (Sigma-70) 59 9e-09
71RPOD_BUCAI (P57163) RNA polymerase sigma factor rpoD (Sigma-70) 59 9e-09
72RPOD_SHEVI (O24744) RNA polymerase sigma factor rpoD (Sigma-70) 59 1e-08
73RPOS_PSEAE (P45684) RNA polymerase sigma factor rpoS 58 2e-08
74RPOD_SALTY (P0A2E3) RNA polymerase sigma factor rpoD (Sigma-70) 58 2e-08
75RPOD_SALTI (P0A2E4) RNA polymerase sigma factor rpoD (Sigma-70) 58 2e-08
76RPOD_RICCN (Q92FZ8) RNA polymerase sigma factor rpoD (Sigma-70) 58 2e-08
77RPOD_RICPR (P33451) RNA polymerase sigma factor rpoD (Sigma-70) 58 2e-08
78RPOD_SERMA (P43344) RNA polymerase sigma factor rpoD (Sigma-70) ... 58 2e-08
79RPOD_ECOLI (P00579) RNA polymerase sigma factor rpoD (Sigma-70) 57 4e-08
80HRDC_STRCO (P18184) RNA polymerase principal sigma factor hrdC 56 6e-08
81RP32_ZYMMO (P50512) RNA polymerase sigma-32 factor 53 5e-07
82RP32_HAEIN (P44404) RNA polymerase sigma-32 factor 50 3e-06
83RPOS_VIBCH (O51804) RNA polymerase sigma factor rpoS (Sigma-38 f... 49 7e-06
84RP32_VIBCH (P50511) RNA polymerase sigma-32 factor 48 2e-05
85RPOD_MYCGE (P47491) RNA polymerase sigma factor rpoD (Sigma-A) 48 2e-05
86RP32_VIBVU (Q8DD54) RNA polymerase sigma-32 factor 48 2e-05
87RP32_CAUCR (P48194) RNA polymerase sigma-32 factor 47 3e-05
88RPSE_BACSU (P06222) RNA polymerase sigma-E factor precursor (Sig... 46 6e-05
89RP32_SERMA (P50510) RNA polymerase sigma-32 factor 46 6e-05
90RP35_BACTK (P62179) RNA polymerase sigma-35 factor precursor 46 8e-05
91RP35_BACCR (P62178) RNA polymerase sigma-35 factor precursor 46 8e-05
92RP35_BACAN (P62177) RNA polymerase sigma-35 factor precursor 46 8e-05
93RPSC_MYXXA (Q07083) RNA polymerase sigma-C factor 45 1e-04
94RPOD_MYCPN (P78022) RNA polymerase sigma factor rpoD (Sigma-A) 44 2e-04
95RP32_PROMI (P50509) RNA polymerase sigma-32 factor 44 3e-04
96RP32_ENTCL (P50508) RNA polymerase sigma-32 factor 43 5e-04
97RP32_CITFR (P11539) RNA polymerase sigma-32 factor (Heat shock r... 43 5e-04
98RPSK_BACSU (P12254) RNA polymerase sigma-K factor precursor (Sig... 43 5e-04
99RP32_PSEAE (P42378) RNA polymerase sigma-32 factor 43 7e-04
100RP32_ECOLI (P0AGB3) RNA polymerase sigma-32 factor (Heat shock r... 42 0.001
101RP32_ECOL6 (P0AGB4) RNA polymerase sigma-32 factor (Heat shock r... 42 0.001
102RP32_ECO57 (P0AGB5) RNA polymerase sigma-32 factor (Heat shock r... 42 0.001
103RP32_BUCBP (Q89B27) RNA polymerase sigma-32 factor 42 0.001
104RP28_BACTK (P62181) RNA polymerase sigma-28 factor precursor 42 0.001
105RP28_BACCR (P62180) RNA polymerase sigma-28 factor precursor 42 0.001
106RP28_BACAN (P62182) RNA polymerase sigma-28 factor precursor 42 0.001
107RPSB_STIAU (Q01624) RNA polymerase sigma-B factor 40 0.004
108RP32_BUCAI (O05385) RNA polymerase sigma-32 factor 40 0.004
109RP32_BUCAP (Q8KA76) RNA polymerase sigma-32 factor 39 0.008
110RPSB_MYXXA (P19433) RNA polymerase sigma-B factor 38 0.017
111RP32_AGRTU (P50507) RNA polymerase sigma-32 factor 38 0.017
112RPSW_STRCO (P17211) RNA polymerase sigma factor whiG 38 0.017
113RPSE_CLOAB (P33657) RNA polymerase sigma-E factor 35 0.11
114CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin) 33 0.42
115PRP5_EMENI (Q5BDW4) Pre-mRNA-processing ATP-dependent RNA helica... 33 0.42
116SEC62_MOUSE (Q8BU14) Translocation protein SEC62 (Translocation ... 33 0.72
117CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-ch... 33 0.72
118AGO2_DROME (Q9VUQ5) Argonaute 2 protein 33 0.72
119PRP5_ASPFU (Q4WT99) Pre-mRNA-processing ATP-dependent RNA helica... 32 0.94
120GATE_SULAC (Q4J945) Glutamyl-tRNA(Gln) amidotransferase subunit ... 32 1.2
121VGLD_BHV1P (P24906) Glycoprotein D precursor (Glycoprotein IV) 32 1.2
122CDN1C_MOUSE (P49919) Cyclin-dependent kinase inhibitor 1C (Cycli... 32 1.6
123FILA_HUMAN (P20930) Filaggrin 31 2.1
124KPC1_TRIRE (Q99014) Protein kinase C-like (EC 2.7.11.13) 31 2.1
125VNUA_PRVKA (P33485) Probable nuclear antigen 31 2.7
126VGLD_BHV1S (Q08100) Glycoprotein D precursor (Glycoprotein IV) 31 2.7
127CENPB_MOUSE (P27790) Major centromere autoantigen B (Centromere ... 30 3.6
128DRS1_ASPOR (Q2UQI6) ATP-dependent RNA helicase drs1 (EC 3.6.1.-) 30 3.6
129KC1G3_HUMAN (Q9Y6M4) Casein kinase I isoform gamma-3 (EC 2.7.11.... 30 3.6
130PTMA_BOVIN (P01252) Prothymosin alpha [Contains: Thymosin alpha-1] 30 3.6
131YAWH_SCHPO (Q10191) Hypothetical protein C3F10.17 in chromosome I 30 4.6
132PHOSP_SENDA (Q9DUE2) Phosphoprotein (Protein P) 30 4.6
133W_SENDA (P69286) Protein W 30 4.6
134CD99_HUMAN (P14209) CD99 antigen precursor (T-cell surface glyco... 30 4.6
135V_SENDA (Q9DUE1) Protein V 30 4.6
136PRP5_ASPOR (Q2U2J6) Pre-mRNA-processing ATP-dependent RNA helica... 30 6.1
137RS6_BRUME (Q8YFP0) 30S ribosomal protein S6 30 6.1
138RS6_BRUAB (Q57ER2) 30S ribosomal protein S6 30 6.1
139RS6_BRUA2 (Q2YMG9) 30S ribosomal protein S6 30 6.1
140DSRAD_HUMAN (P55265) Double-stranded RNA-specific adenosine deam... 30 6.1
141ISW2_ORYSA (Q7G8Y3) Putative chromatin remodelling complex ATPas... 30 6.1
142IF2_ENTFC (P18311) Translation initiation factor IF-2 30 6.1
143PTMA_HUMAN (P06454) Prothymosin alpha [Contains: Thymosin alpha-1] 30 6.1
144TXND3_ANTCR (P90666) Thioredoxin domain-containing protein 3 hom... 30 6.1
145KC1G3_RAT (Q62763) Casein kinase I isoform gamma-3 (EC 2.7.11.1)... 30 6.1
146ZCHC3_HUMAN (Q9NUD5) Zinc finger CCHC domain-containing protein 3 30 6.1
147CDC28_SCHPO (Q10752) Putative ATP-dependent RNA helicase cdc28 (... 30 6.1
148PTMA_PONPY (Q5R790) Prothymosin alpha [Contains: Thymosin alpha] 30 6.1
149IF2_CORGL (Q8NP40) Translation initiation factor IF-2 30 6.1
150CWC25_GIBZE (Q4IRI9) Pre-mRNA-splicing factor CWC25 30 6.1
151RS6_BRUSU (Q8G274) 30S ribosomal protein S6 29 7.9
152PHOSP_SENDO (O57285) Phosphoprotein (Protein P) 29 7.9
153VE4_HPV1A (P06923) Probable protein E4 29 7.9
154PRPH_MESAU (P06680) Acidic proline-rich protein HP43A precursor 29 7.9
155W_SENDO (P69288) Protein W 29 7.9
156V_SENDO (P69287) Protein V 29 7.9 
>RPOD_ANASP (P26683) RNA polymerase sigma factor rpoD (Sigma-A)|
          Length = 390

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 41/83 (49%), Positives = 63/83 (75%)
 Frame = -1

Query: 464 ETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIR 285
           ET E+ + +  +++D++K LDSL+PRER+V+R R+G+DDG+ +TL +IGQ+  V+RERIR
Sbjct: 307 ETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIR 366

Query: 284 QIEMAAFRKLRSKKKVTSLQHYL 216
           QIE  A RKLR   + + L+ Y+
Sbjct: 367 QIEAKALRKLRHPNRNSVLKEYI 389
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>RPOD_MICAE (P52322) RNA polymerase sigma factor rpoD1|
          Length = 416

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 39/83 (46%), Positives = 62/83 (74%)
 Frame = -1

Query: 464 ETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIR 285
           ET E+ + +  +++D++  LD+L+PRER+V+R R+G+DDG+ +TL +IGQ+  V+RERIR
Sbjct: 333 ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIR 392

Query: 284 QIEMAAFRKLRSKKKVTSLQHYL 216
           QIE  A RKLR   + + L+ Y+
Sbjct: 393 QIEAKALRKLRHPNRNSILKEYI 415
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>RPOD_SYNY3 (P74565) RNA polymerase sigma factor rpoD|
          Length = 425

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 39/83 (46%), Positives = 62/83 (74%)
 Frame = -1

Query: 464 ETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIR 285
           ET E+ + +  +++D++  LD+L+PRER+V+R R+G+DDG+ +TL +IGQ+  V+RERIR
Sbjct: 342 ETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIR 401

Query: 284 QIEMAAFRKLRSKKKVTSLQHYL 216
           QIE  A RKLR   + + L+ Y+
Sbjct: 402 QIEAKALRKLRHPNRNSILKEYI 424
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>RPOD_STRR6 (P0A4J0) RNA polymerase sigma factor rpoD|
          Length = 369

 Score = 85.9 bits (211), Expect = 7e-17
 Identities = 45/108 (41%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           VSL   +G  D ++  +   D+  E   +   R+ +++ +D+ LD+LT RE  V+R RFG
Sbjct: 261 VSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEILDTLTDREENVLRLRFG 320

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +DDGK RTL D+G++  V+RERIRQIE  A RKLR   +   L+ ++E
Sbjct: 321 LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRSKPLRDFIE 368
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>RPOD_STRPN (P0A4I9) RNA polymerase sigma factor rpoD|
          Length = 369

 Score = 85.9 bits (211), Expect = 7e-17
 Identities = 45/108 (41%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           VSL   +G  D ++  +   D+  E   +   R+ +++ +D+ LD+LT RE  V+R RFG
Sbjct: 261 VSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEILDTLTDREENVLRLRFG 320

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +DDGK RTL D+G++  V+RERIRQIE  A RKLR   +   L+ ++E
Sbjct: 321 LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQPSRSKPLRDFIE 368
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>RPOD_SYNP7 (P38023) RNA polymerase sigma factor rpoD1|
          Length = 399

 Score = 85.5 bits (210), Expect = 9e-17
 Identities = 39/83 (46%), Positives = 61/83 (73%)
 Frame = -1

Query: 464 ETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIR 285
           ET E+ + +  +++D++  L +L+PRER+V+R R+G+DDG+ +TL +IGQL  V+RERIR
Sbjct: 316 ETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIR 375

Query: 284 QIEMAAFRKLRSKKKVTSLQHYL 216
           QIE  A RKLR   + + L+ Y+
Sbjct: 376 QIEAKALRKLRHPNRNSILKEYI 398
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>RPOD_STRMU (O33662) RNA polymerase sigma factor rpoD (Sigma-42)|
          Length = 371

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 45/108 (41%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           VSL   +G  D ++  +   D+  E   +   R+ +++ +D+ LD+LT RE  V+R RFG
Sbjct: 263 VSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG 322

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +DDGK RTL D+G++  V+RERIRQIE  A RKLR   +   L+ ++E
Sbjct: 323 LDDGKMRTLEDVGKVFDVTRERIRQIEAKALRKLRHPSRSKQLRDFVE 370
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>RPOD_ENTFA (P52329) RNA polymerase sigma factor rpoD (Sigma-42)|
          Length = 368

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTY--QEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRF 360
           VSL   +G  D ++    I    +T  AE   + L +K+ ++  LD+LT RE  V+R RF
Sbjct: 261 VSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYEL-LKEQLEDVLDTLTDREENVLRLRF 319

Query: 359 GMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           G+DDG+ RTL ++G++ GV+RERIRQIE  A RKLR   +   L+ +LE
Sbjct: 320 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE 368
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>RPSD2_BACSP (P52328) RNA polymerase sigma factor rpoD (Sigma-A)|
          Length = 377

 Score = 82.8 bits (203), Expect = 6e-16
 Identities = 45/115 (39%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
 Frame = -1

Query: 554 MCLPRYSVSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPRERE 378
           M + +  VSL   +G  D ++  +   D+   T  +      +K+ ++  LD+LT RE  
Sbjct: 263 MKIAQEPVSLETPIGEEDDSHLGDFIEDQEALTPADAAAYELLKEQLEDVLDTLTEREEN 322

Query: 377 VIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           V+R RFG+DDG+ RTL ++G++ GV+RERIRQIE  A RKLR   +   L+ +LE
Sbjct: 323 VLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE 377
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>RPOD_BACSU (P06224) RNA polymerase sigma factor rpoD (Sigma-A) (Sigma-43)|
          Length = 371

 Score = 82.4 bits (202), Expect = 8e-16
 Identities = 45/109 (41%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTY--QEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRF 360
           VSL   +G  D ++    I   ++T  ++   + L +K+ ++  LD+LT RE  V+R RF
Sbjct: 264 VSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYEL-LKEQLEDVLDTLTDREENVLRLRF 322

Query: 359 GMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           G+DDG+ RTL ++G++ GV+RERIRQIE  A RKLR   +   L+ +LE
Sbjct: 323 GLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE 371
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>RPOD_LISMO (P52331) RNA polymerase sigma factor rpoD (Sigma-43)|
          Length = 374

 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 45/109 (41%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTY--QEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRF 360
           VSL   +G  D ++    I    +T  ++   + L +K+ ++  LD+LT RE  V+R RF
Sbjct: 267 VSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYEL-LKEQLEDVLDTLTDREENVLRLRF 325

Query: 359 GMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           G+DDG+ RTL ++G++ GV+RERIRQIE  A RKLR   +   L+ +LE
Sbjct: 326 GLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE 374
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>RPOD_LISIN (Q92BQ6) RNA polymerase sigma factor rpoD (Sigma-43)|
          Length = 374

 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 45/109 (41%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTY--QEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRF 360
           VSL   +G  D ++    I    +T  ++   + L +K+ ++  LD+LT RE  V+R RF
Sbjct: 267 VSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYEL-LKEQLEDVLDTLTDREENVLRLRF 325

Query: 359 GMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           G+DDG+ RTL ++G++ GV+RERIRQIE  A RKLR   +   L+ +LE
Sbjct: 326 GLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE 374
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>RPOD_THEMA (P77994) RNA polymerase sigma factor rpoD (Sigma-A)|
          Length = 399

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 42/108 (38%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
 Frame = -1

Query: 536 SVSLTGKVG-CTDVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRF 360
           ++SL   +G   D + ++  AD S  + ++   R+ M+++++K L +L+PRE  V+R R+
Sbjct: 284 TISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPREAMVLRMRY 343

Query: 359 GMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYL 216
           G+ DGK +TL ++GQ   V+RERIRQIE+ A RKLR   +   L+  L
Sbjct: 344 GLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLL 391
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>RPOD_CLOAB (P33656) RNA polymerase sigma factor rpoD (Sigma-A) (Major|
           vegetative sigma factor)
          Length = 378

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 42/91 (46%), Positives = 62/91 (68%)
 Frame = -1

Query: 485 ITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMG 306
           I  D++   A+    R+ +K+ + K L++LTPRE +V+R RFG+DDG+ARTL ++G+   
Sbjct: 289 IPDDEAPAPADAAAFRM-LKEQLLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFN 347

Query: 305 VSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           V+RERIRQIE  A RKLR   +   L+ YL+
Sbjct: 348 VTRERIRQIEAKALRKLRHPSRSKKLKDYLD 378
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>RPSC_SYNY3 (Q59996) Probable RNA polymerase sigma-C factor|
          Length = 404

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 47/112 (41%), Positives = 69/112 (61%)
 Frame = -1

Query: 548 LPRYSVSLTGKVGCTDVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIR 369
           +PR SVSL  KVG    T      +  T++ E+ L R  ++ D+ + L  LTPRE+EVI 
Sbjct: 291 VPR-SVSLELKVGQDKDTELMDLLETDTQSPEDELMREALQNDMQEILLDLTPREQEVIA 349

Query: 368 YRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
            RFG  DG A +L +IG+++ +SRER+RQIE  A +KLR  ++   ++ Y E
Sbjct: 350 LRFGFQDGVAHSLSEIGRILNLSRERVRQIEAKALQKLRHPRRRDRIRDYYE 401
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>RPOD_BACHD (O66381) RNA polymerase sigma factor rpoD (Sigma-A) (Sigma-43)|
          Length = 372

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 43/108 (39%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           VSL   +G  D ++  +   D+      +      +K+ ++  LD+LT RE  V+R RFG
Sbjct: 265 VSLETPIGEEDDSHLGDFIEDQDALAPSDAAAYELLKEQLEDVLDTLTDREENVLRLRFG 324

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +DDG+ RTL ++G++ GV+RERIRQIE  A RKLR   +   L+ +LE
Sbjct: 325 LDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE 372
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>RPOD_STAES (Q8CP24) RNA polymerase sigma factor rpoD|
          Length = 368

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           VSL   +G  D ++  +   D+  ++  +      +K+ ++  LD+LT RE  V+R RFG
Sbjct: 261 VSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFG 320

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +DDG+ RTL ++G++ GV+RERIRQIE  A RKLR   +   L+ +++
Sbjct: 321 LDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
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>RPOD_STAEQ (Q5HNY7) RNA polymerase sigma factor rpoD|
          Length = 368

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           VSL   +G  D ++  +   D+  ++  +      +K+ ++  LD+LT RE  V+R RFG
Sbjct: 261 VSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFG 320

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +DDG+ RTL ++G++ GV+RERIRQIE  A RKLR   +   L+ +++
Sbjct: 321 LDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
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>RPOD_STAAW (P0A0I9) RNA polymerase sigma factor rpoD|
          Length = 368

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           VSL   +G  D ++  +   D+  ++  +      +K+ ++  LD+LT RE  V+R RFG
Sbjct: 261 VSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFG 320

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +DDG+ RTL ++G++ GV+RERIRQIE  A RKLR   +   L+ +++
Sbjct: 321 LDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
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>RPOD_STAAU (P0A0J0) RNA polymerase sigma factor rpoD|
          Length = 368

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           VSL   +G  D ++  +   D+  ++  +      +K+ ++  LD+LT RE  V+R RFG
Sbjct: 261 VSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFG 320

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +DDG+ RTL ++G++ GV+RERIRQIE  A RKLR   +   L+ +++
Sbjct: 321 LDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
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>RPOD_STAAS (Q6G905) RNA polymerase sigma factor rpoD|
          Length = 368

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           VSL   +G  D ++  +   D+  ++  +      +K+ ++  LD+LT RE  V+R RFG
Sbjct: 261 VSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFG 320

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +DDG+ RTL ++G++ GV+RERIRQIE  A RKLR   +   L+ +++
Sbjct: 321 LDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
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>RPOD_STAAR (Q6GGD8) RNA polymerase sigma factor rpoD|
          Length = 368

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           VSL   +G  D ++  +   D+  ++  +      +K+ ++  LD+LT RE  V+R RFG
Sbjct: 261 VSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFG 320

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +DDG+ RTL ++G++ GV+RERIRQIE  A RKLR   +   L+ +++
Sbjct: 321 LDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
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>RPOD_STAAN (Q99TT5) RNA polymerase sigma factor rpoD|
          Length = 368

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           VSL   +G  D ++  +   D+  ++  +      +K+ ++  LD+LT RE  V+R RFG
Sbjct: 261 VSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFG 320

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +DDG+ RTL ++G++ GV+RERIRQIE  A RKLR   +   L+ +++
Sbjct: 321 LDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
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>RPOD_STAAM (P0A0I8) RNA polymerase sigma factor rpoD|
          Length = 368

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           VSL   +G  D ++  +   D+  ++  +      +K+ ++  LD+LT RE  V+R RFG
Sbjct: 261 VSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFG 320

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +DDG+ RTL ++G++ GV+RERIRQIE  A RKLR   +   L+ +++
Sbjct: 321 LDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
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>RPOD_STAAC (Q5HFJ9) RNA polymerase sigma factor rpoD|
          Length = 368

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           VSL   +G  D ++  +   D+  ++  +      +K+ ++  LD+LT RE  V+R RFG
Sbjct: 261 VSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFG 320

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +DDG+ RTL ++G++ GV+RERIRQIE  A RKLR   +   L+ +++
Sbjct: 321 LDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD 368
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>RPOD_LACLA (Q04506) RNA polymerase sigma factor rpoD (Sigma-42)|
          Length = 386

 Score = 79.0 bits (193), Expect = 9e-15
 Identities = 40/107 (37%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           VSL   +G  D ++  +   D   E+  +  +R+ +++ +D+ +D+LT RE  V+R RFG
Sbjct: 280 VSLETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMDTLTDREENVLRMRFG 339

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYL 216
           +DDG+  TL D+G+   V+RERIRQIE  A +KLR  ++   L+ ++
Sbjct: 340 LDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLRHPRRSKPLRDFM 386
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>RPOD_LACLC (P58290) RNA polymerase sigma factor rpoD (Sigma-42) (Fragment)|
          Length = 364

 Score = 79.0 bits (193), Expect = 9e-15
 Identities = 40/107 (37%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           VSL   +G  D ++  +   D   E+  +  +R+ +++ +D+ +D+LT RE  V+R RFG
Sbjct: 258 VSLETPIGEEDDSHLGDFIEDDVIESPVDYTNRILLREQLDEVMDTLTDREENVLRMRFG 317

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYL 216
           +DDG+  TL D+G+   V+RERIRQIE  A +KLR  ++   L+ ++
Sbjct: 318 LDDGRMHTLEDVGKQFKVTRERIRQIEAKAIKKLRHPRRSKPLRDFM 364
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>RPSC_ANASP (Q03066) RNA polymerase sigma-C factor|
          Length = 416

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 48/112 (42%), Positives = 66/112 (58%)
 Frame = -1

Query: 548 LPRYSVSLTGKVGCTDVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIR 369
           +PR SVSL  KVG    T      +    T EE L R  +++D+   L  LT RER+VI 
Sbjct: 303 VPR-SVSLETKVGKDKDTELGELLETDGVTPEEMLMRESLQRDLQHLLADLTSRERDVIL 361

Query: 368 YRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
            RFG+ DG   +L +IG+ + +SRER+RQIE  A +KLR  K+   ++ YLE
Sbjct: 362 MRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYLE 413
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>HRDA_STRCO (P18182) RNA polymerase principal sigma factor hrdA|
          Length = 396

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
 Frame = -1

Query: 548 LPRYSVSLTGKVGCTD-VTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVI 372
           L +  VSL   VG  D V   ++  D    +  E+   L +++ ++  L +L  RER+V+
Sbjct: 284 LAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQHLEAVLSTLGERERKVV 343

Query: 371 RYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           + R+G+ DG+ RTL +IG+L GV+RERIRQIE     KLR       L+ YL+
Sbjct: 344 QLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDHAYADQLRGYLD 396
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>RPOD_CHLPN (Q9Z7F0) RNA polymerase sigma factor rpoD (Sigma-70) (Sigma-A)|
           (Sigma-66)
          Length = 572

 Score = 72.4 bits (176), Expect = 8e-13
 Identities = 40/116 (34%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
 Frame = -1

Query: 548 LPRYSVSLTGKVG-CTDVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVI 372
           + ++ +SL  +VG  ++ ++ +   D + E+  E      +K  + + L +LT RER V+
Sbjct: 442 IAQHPISLQAEVGEGSESSFGDFLEDTAVESPAEATGYSMLKDKMKEVLKTLTDRERFVL 501

Query: 371 RYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLEPAE 204
            +RFG+ DGK +TL ++G    V+RERIRQIE  A RK+R   +   L+ +L+  E
Sbjct: 502 IHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLRAFLDLLE 557
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>RPOD_HELPJ (Q9ZMY3) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 681

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
 Frame = -1

Query: 533 VSLTGKVGCTDV-TYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           +SL   VG  D   + +   DK+  ++ + + R  +K  ++  LD L  RE+ VIR RFG
Sbjct: 572 ISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFG 631

Query: 356 M-DDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYL 216
           + DD   RTL +IG+ + V+RER+RQIE +A +KLRS +    L++YL
Sbjct: 632 LLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 679
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>RPOD_HELPY (P55993) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 671

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
 Frame = -1

Query: 533 VSLTGKVGCTDV-TYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           +SL   VG  D   + +   DK+  ++ + + R  +K  ++  LD L  RE+ VIR RFG
Sbjct: 562 ISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFG 621

Query: 356 M-DDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYL 216
           + DD   RTL +IG+ + V+RER+RQIE +A +KLRS +    L++YL
Sbjct: 622 LLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYL 669
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>RPOD_MYCTU (P0A602) RNA polymerase sigma factor rpoD (Sigma-A)|
          Length = 528

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
 Frame = -1

Query: 542 RYSVSLTGKVGCT-DVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRY 366
           R  +SL   +G   D    +   D     A + +    ++  +   LD+L+ RE  V+R 
Sbjct: 418 REPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRL 477

Query: 365 RFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           RFG+ DG+ RTL +IGQ+ GV+RERIRQIE     KLR   +   L+ YL+
Sbjct: 478 RFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528
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>RPOD_MYCBO (P0A603) RNA polymerase sigma factor rpoD (Sigma-A)|
          Length = 528

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
 Frame = -1

Query: 542 RYSVSLTGKVGCT-DVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRY 366
           R  +SL   +G   D    +   D     A + +    ++  +   LD+L+ RE  V+R 
Sbjct: 418 REPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRL 477

Query: 365 RFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           RFG+ DG+ RTL +IGQ+ GV+RERIRQIE     KLR   +   L+ YL+
Sbjct: 478 RFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528
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>RPSB_CORDI (P33118) RNA polymerase sigma factor sigB|
          Length = 329

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
 Frame = -1

Query: 542 RYSVSLTGKVGCTD-VTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRY 366
           R  VSL   VG  +     +   D     AE  +       D+   LD+L  RE++VIR 
Sbjct: 219 RDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRHSDIRTVLDTLEQREQDVIRL 278

Query: 365 RFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           R+G+DDG  RTL  IG+  G+SRER+RQIE     KLR   +   L+ Y +
Sbjct: 279 RYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMSKLRDGARAEKLRAYAQ 329
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>RPOD_CHLMU (P56835) RNA polymerase sigma factor rpoD (Sigma-70) (Sigma-A)|
           (Sigma-66)
          Length = 571

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 39/116 (33%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
 Frame = -1

Query: 548 LPRYSVSLTGKVGCT-DVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVI 372
           + ++ +SL  +VG + + ++ +   D + E+  E      +K  + + L +LT RER V+
Sbjct: 442 IAQHPISLQAEVGDSGESSFGDFLEDTAVESPAEATGYSMLKDKMKEVLKTLTDRERFVL 501

Query: 371 RYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLEPAE 204
            +RFG+ DG+ +TL ++G    V+RERIRQIE  A RK+R   +   L+ +L+  E
Sbjct: 502 IHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLRAFLDLLE 557
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>RPOD_BORBU (P52323) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 631

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
 Frame = -1

Query: 542 RYSVSLTGKVGCT-DVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRY 366
           R  VSL   +G   D    +   DK+ +        + ++  +   L +L  RE+EV++ 
Sbjct: 518 REPVSLETPIGEEEDSVLSDFIEDKAIKNPANHTSFVVLQDQIRAILGTLPEREQEVVKM 577

Query: 365 RFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           RFG++DG + TL ++G    V+RERIRQIE  A R+L++ KK   L+ YLE
Sbjct: 578 RFGLEDGYSLTLEEVGLHFNVTRERIRQIESKALRRLKNPKKTQKLKDYLE 628
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>RPOD_CHLTR (P18333) RNA polymerase sigma factor rpoD (Sigma-70) (Sigma-A)|
           (Sigma-66)
          Length = 571

 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
 Frame = -1

Query: 548 LPRYSVSLTGKVGCT-DVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVI 372
           + ++ +SL  +VG   + ++ +   D + E+  E      +K  + + L +LT RER V+
Sbjct: 442 IAQHPISLQAEVGDGGESSFGDFLEDTAVESPAEATGYSMLKDKMKEVLKTLTDRERFVL 501

Query: 371 RYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLEPAE 204
            +RFG+ DG+ +TL ++G    V+RERIRQIE  A RK+R   +   L+ +L+  E
Sbjct: 502 IHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLRAFLDLLE 557
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>RPOD_STRAU (P27785) RNA polymerase sigma factor rpoD|
          Length = 317

 Score = 68.9 bits (167), Expect = 9e-12
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
 Frame = -1

Query: 548 LPRYSVSLTGKVGCTD-VTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVI 372
           L +  VSL   VG  D V   ++  D    +  E+       + ++  L +L  RER+V+
Sbjct: 205 LAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLRCEHLEAVLSTLGERERKVV 264

Query: 371 RYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           + R+G+ DG+ RTL +IG++ GV+RERIRQIE     KLR       L+ YL+
Sbjct: 265 QLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD 317
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>RPOD_LEPIN (P59117) RNA polymerase sigma factor rpoD|
          Length = 585

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
 Frame = -1

Query: 542 RYSVSLTGKVGCT-DVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRY 366
           R  +SL   VG   D    +   D   ET         + + + + L +L  RE++VIR 
Sbjct: 474 REPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKVIRM 533

Query: 365 RFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           RFG+DDG  +TL ++G    V+RERIRQIE  A R+LR   +   L+ Y++
Sbjct: 534 RFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYID 584
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>RPOD_LEPIC (P61540) RNA polymerase sigma factor rpoD|
          Length = 585

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
 Frame = -1

Query: 542 RYSVSLTGKVGCT-DVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRY 366
           R  +SL   VG   D    +   D   ET         + + + + L +L  RE++VIR 
Sbjct: 474 REPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKVIRM 533

Query: 365 RFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           RFG+DDG  +TL ++G    V+RERIRQIE  A R+LR   +   L+ Y++
Sbjct: 534 RFGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYID 584
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>RPOD_TREPA (O83506) RNA polymerase sigma factor rpoD (Sigma-A) (Major|
           vegetative sigma factor)
          Length = 611

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
 Frame = -1

Query: 542 RYSVSLTGKVGCT-DVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRY 366
           R  +SL   +G   D +  +   D   E       R+ +K++V   L +L  RE EV+R 
Sbjct: 500 REPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLLKEEVRSILSALPAREHEVLRM 559

Query: 365 RFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           RFG+D   ++TL ++G    V+RERIRQIE  A ++LR  +    L+ +L+
Sbjct: 560 RFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSRRLKDFLD 610
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>RPOD_XYLFT (Q87DT7) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 618

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 35/88 (39%), Positives = 53/88 (60%)
 Frame = -1

Query: 476 DKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSR 297
           D + E+  +T   + + + V + L  LTPRE +V+R RFG+D     TL ++G+   V+R
Sbjct: 529 DPNVESPVDTTTNVNLSETVREVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTR 588

Query: 296 ERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           ERIRQIE  A RKLR   +   L+ +L+
Sbjct: 589 ERIRQIEAKALRKLRHPSRSEQLRSFLD 616
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>RPOD_XYLFA (Q9PDM9) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 618

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 35/88 (39%), Positives = 53/88 (60%)
 Frame = -1

Query: 476 DKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSR 297
           D + E+  +T   + + + V + L  LTPRE +V+R RFG+D     TL ++G+   V+R
Sbjct: 529 DPNVESPVDTTTNVNLSETVREVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTR 588

Query: 296 ERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           ERIRQIE  A RKLR   +   L+ +L+
Sbjct: 589 ERIRQIEAKALRKLRHPSRSEQLRSFLD 616
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>RPOD_MYXXA (P17531) RNA polymerase sigma factor rpoD (Sigma-80)|
          Length = 708

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 35/88 (39%), Positives = 53/88 (60%)
 Frame = -1

Query: 476 DKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSR 297
           DKS  +  + +  + + +   K L +LTPRE +V+R RFG+ +    TL ++GQ   V+R
Sbjct: 620 DKSLVSPADAVINMNLAEQTRKVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTR 679

Query: 296 ERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           ERIRQIE  A RKLR   +   L+ ++E
Sbjct: 680 ERIRQIEAKALRKLRHPSRSKRLRSFVE 707
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>HRDB_STRGR (P77951) RNA polymerase principal sigma factor hrdB|
          Length = 514

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 33/97 (34%), Positives = 55/97 (56%)
 Frame = -1

Query: 503 DVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHD 324
           D  + ++  D       + +    +++ +   LD+L+ RE  V+  RFG+ DG+ +TL +
Sbjct: 418 DSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRFGLTDGQPKTLDE 477

Query: 323 IGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           IG++ GV+RERIRQIE     KLR   +   L+ YL+
Sbjct: 478 IGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 514
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>HRDB_STRCO (P18183) RNA polymerase principal sigma factor hrdB|
          Length = 511

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 33/97 (34%), Positives = 55/97 (56%)
 Frame = -1

Query: 503 DVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHD 324
           D  + ++  D       + +    +++ +   LD+L+ RE  V+  RFG+ DG+ +TL +
Sbjct: 415 DSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRFGLTDGQPKTLDE 474

Query: 323 IGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           IG++ GV+RERIRQIE     KLR   +   L+ YL+
Sbjct: 475 IGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 511
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>RPOD_HAEIN (P43766) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 629

 Score = 65.9 bits (159), Expect = 8e-11
 Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           +S+   +G  D ++  +   D + E   ++     +K    + L+ LTPRE +V+R RFG
Sbjct: 521 ISMETPIGDDDDSHLGDFIEDSTLELPLDSATAQSLKVATHEVLEGLTPREAKVLRMRFG 580

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +D     TL ++G+   V+RERIRQIE  A RKLR   +  +L+ +L+
Sbjct: 581 IDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLD 628
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>RPOD_NEIGO (P52325) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 642

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 33/69 (47%), Positives = 46/69 (66%)
 Frame = -1

Query: 407 LDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSL 228
           L+SLTPRE +V+R RFG+D     TL ++G+   V+RERIRQIE  A RKLR   +   L
Sbjct: 572 LESLTPREAKVLRMRFGIDMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPTRSDRL 631

Query: 227 QHYLEPAES 201
           + +L+  +S
Sbjct: 632 RSFLDSEDS 640
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>RPOD_XANCP (Q8P4H2) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 624

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 34/88 (38%), Positives = 51/88 (57%)
 Frame = -1

Query: 476 DKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSR 297
           D + E+  +    + + + V   L  LTPRE +V+R RFG+D     TL ++G+   V+R
Sbjct: 535 DTNVESPIDNTTNINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTR 594

Query: 296 ERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           ERIRQIE  A RKLR   +   L+ +L+
Sbjct: 595 ERIRQIEAKALRKLRHPSRSEQLRSFLD 622
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>RPOD_XANAC (Q8PG33) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 625

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 34/88 (38%), Positives = 51/88 (57%)
 Frame = -1

Query: 476 DKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSR 297
           D + E+  +    + + + V   L  LTPRE +V+R RFG+D     TL ++G+   V+R
Sbjct: 536 DTNVESPIDNTTNINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTR 595

Query: 296 ERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           ERIRQIE  A RKLR   +   L+ +L+
Sbjct: 596 ERIRQIEAKALRKLRHPSRSEQLRSFLD 623
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>HRDD_STRCO (P18249) RNA polymerase principal sigma factor hrdD|
          Length = 332

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 30/93 (32%), Positives = 56/93 (60%)
 Frame = -1

Query: 503 DVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHD 324
           +  + ++  D S  + E+++  L   +++D  +  L PR   +I+ R+G+DDG+ RTL +
Sbjct: 237 ETQFGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDPRTASIIKMRYGIDDGRERTLTE 296

Query: 323 IGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQ 225
           +G+  G++RERIRQIE  A  +L+   + T  +
Sbjct: 297 VGKEHGLTRERIRQIEKHALLELKKLARDTGFE 329
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>RPOD_RHOCA (P46400) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 674

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 32/73 (43%), Positives = 45/73 (61%)
 Frame = -1

Query: 431 MKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
           +K+   + L SLTPRE  V+R RFG+      TL ++GQ   V+RERIRQIE  A RKL+
Sbjct: 601 LKETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 660

Query: 251 SKKKVTSLQHYLE 213
              +   L+ +L+
Sbjct: 661 HPSRSRKLRSFLD 673
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>RPOD_RHIME (Q59753) RNA polymerase sigma factor rpoD (Sigma-A) (Major|
           vegetative sigma factor)
          Length = 684

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 31/73 (42%), Positives = 45/73 (61%)
 Frame = -1

Query: 431 MKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
           +++   + L SLTPRE  V+R RFG+      TL ++GQ   V+RERIRQIE  A RKL+
Sbjct: 611 LRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 670

Query: 251 SKKKVTSLQHYLE 213
              +   L+ +L+
Sbjct: 671 HPSRSRKLRSFLD 683
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>RPOD_AGRT5 (P33452) RNA polymerase sigma factor rpoD (Sigma-A) (Major|
           vegetative sigma factor)
          Length = 684

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 31/73 (42%), Positives = 45/73 (61%)
 Frame = -1

Query: 431 MKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
           +++   + L SLTPRE  V+R RFG+      TL ++GQ   V+RERIRQIE  A RKL+
Sbjct: 611 LRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 670

Query: 251 SKKKVTSLQHYLE 213
              +   L+ +L+
Sbjct: 671 HPSRSRKLRSFLD 683
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>RPOD_CAUCR (P52324) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 652

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 31/73 (42%), Positives = 45/73 (61%)
 Frame = -1

Query: 431 MKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
           +++   + L SLTPRE  V+R RFG+      TL ++GQ   V+RERIRQIE  A RKL+
Sbjct: 579 LRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 638

Query: 251 SKKKVTSLQHYLE 213
              +   L+ +L+
Sbjct: 639 HPSRSRKLRSFLD 651
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>HRDD_STRVF (Q60012) RNA polymerase principal sigma factor hrdD|
          Length = 332

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 29/90 (32%), Positives = 54/90 (60%)
 Frame = -1

Query: 503 DVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHD 324
           +  + ++  D S  + E+++  L   +++D  +  L  R   +I+ R+G+DDG+ RTL +
Sbjct: 237 ETQFGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTE 296

Query: 323 IGQLMGVSRERIRQIEMAAFRKLRSKKKVT 234
           +G+  G++RERIRQIE  A  +L+   + T
Sbjct: 297 VGKEHGLTRERIRQIEKHALLELKKLARDT 326
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>RPOD_PSEAE (P26480) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 617

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 31/73 (42%), Positives = 45/73 (61%)
 Frame = -1

Query: 431 MKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
           +K+   + L  LT RE +V+R RFG+D     TL ++G+   V+RERIRQIE  A RKLR
Sbjct: 544 LKESTREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 603

Query: 251 SKKKVTSLQHYLE 213
              +   L+ +L+
Sbjct: 604 HPSRSEHLRSFLD 616
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>RPOS_SHIFL (P35540) RNA polymerase sigma factor rpoS|
          Length = 330

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 32/87 (36%), Positives = 53/87 (60%)
 Frame = -1

Query: 512 GCTDVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKART 333
           G ++    +I AD+     E+T     MK+ + K L  L  ++REV+  RFG+   +A T
Sbjct: 228 GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287

Query: 332 LHDIGQLMGVSRERIRQIEMAAFRKLR 252
           L D+G+ +G++RER+RQI++   R+LR
Sbjct: 288 LEDVGREIGLTRERVRQIQVEGLRRLR 314
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>RPOS_SALTY (P0A2E5) RNA polymerase sigma factor rpoS (Sigma-38)|
          Length = 330

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 32/87 (36%), Positives = 53/87 (60%)
 Frame = -1

Query: 512 GCTDVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKART 333
           G ++    +I AD+     E+T     MK+ + K L  L  ++REV+  RFG+   +A T
Sbjct: 228 GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287

Query: 332 LHDIGQLMGVSRERIRQIEMAAFRKLR 252
           L D+G+ +G++RER+RQI++   R+LR
Sbjct: 288 LEDVGREIGLTRERVRQIQVEGLRRLR 314
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>RPOS_SALTI (P0A2E6) RNA polymerase sigma factor rpoS (Sigma-38)|
          Length = 330

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 32/87 (36%), Positives = 53/87 (60%)
 Frame = -1

Query: 512 GCTDVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKART 333
           G ++    +I AD+     E+T     MK+ + K L  L  ++REV+  RFG+   +A T
Sbjct: 228 GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287

Query: 332 LHDIGQLMGVSRERIRQIEMAAFRKLR 252
           L D+G+ +G++RER+RQI++   R+LR
Sbjct: 288 LEDVGREIGLTRERVRQIQVEGLRRLR 314
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>RPOS_SALDU (P0A2E7) RNA polymerase sigma factor rpoS (Sigma-38)|
          Length = 330

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 32/87 (36%), Positives = 53/87 (60%)
 Frame = -1

Query: 512 GCTDVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKART 333
           G ++    +I AD+     E+T     MK+ + K L  L  ++REV+  RFG+   +A T
Sbjct: 228 GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287

Query: 332 LHDIGQLMGVSRERIRQIEMAAFRKLR 252
           L D+G+ +G++RER+RQI++   R+LR
Sbjct: 288 LEDVGREIGLTRERVRQIQVEGLRRLR 314
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>RPOS_ECOLI (P13445) RNA polymerase sigma factor rpoS (Sigma-38)|
          Length = 330

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 32/87 (36%), Positives = 53/87 (60%)
 Frame = -1

Query: 512 GCTDVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKART 333
           G ++    +I AD+     E+T     MK+ + K L  L  ++REV+  RFG+   +A T
Sbjct: 228 GDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 287

Query: 332 LHDIGQLMGVSRERIRQIEMAAFRKLR 252
           L D+G+ +G++RER+RQI++   R+LR
Sbjct: 288 LEDVGREIGLTRERVRQIQVEGLRRLR 314
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>RPOD_PSEFL (P52326) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 615

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 31/73 (42%), Positives = 45/73 (61%)
 Frame = -1

Query: 431 MKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
           +K+   + L  LT RE +V+R RFG+D     TL ++G+   V+RERIRQIE  A RKLR
Sbjct: 542 LKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 601

Query: 251 SKKKVTSLQHYLE 213
              +   L+ +L+
Sbjct: 602 HPTRSEHLRSFLD 614
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>RPSB_ANASP (Q03065) RNA polymerase sigma-B factor|
          Length = 332

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
 Frame = -1

Query: 548 LPRYSVSLTGKVGCT-DVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVI 372
           L R  VSL  ++G   D   Q++  D    + E    R  + +D+   L  LTP+++EV+
Sbjct: 222 LVRQPVSLDMRIGFEQDTQLQDLLKDDGM-SPERYAERELLYQDIHNLLAKLTPQQKEVL 280

Query: 371 RYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
             RFG+  G   TL  I Q MG+SRER+RQ+E  A   LR
Sbjct: 281 ILRFGLAGGCELTLVQISQRMGISRERVRQVEKQALTLLR 320
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>RPOD_PSEPU (P52327) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 614

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 31/73 (42%), Positives = 45/73 (61%)
 Frame = -1

Query: 431 MKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
           +K+     L  LT RE +V+R RFG+D     TL ++G+   V+RERIRQIE  A+RKLR
Sbjct: 541 LKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAWRKLR 600

Query: 251 SKKKVTSLQHYLE 213
              +   L+ +L+
Sbjct: 601 HPTRSEHLRSFLD 613
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>HRDD_STRGR (Q59914) RNA polymerase principal sigma factor hrdD|
          Length = 332

 Score = 59.7 bits (143), Expect = 5e-09
 Identities = 27/84 (32%), Positives = 52/84 (61%)
 Frame = -1

Query: 503 DVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHD 324
           +  + ++  D S  + E+++  L   +++D  +  L  R   +I+ R+G++DG+ RTL +
Sbjct: 237 ETQFGDLLEDTSAVSPEQSVLTLLRSEELDDLIGQLDDRTASIIKMRYGIEDGRERTLTE 296

Query: 323 IGQLMGVSRERIRQIEMAAFRKLR 252
           +G+  G++RERIRQIE  A  +L+
Sbjct: 297 VGKQHGLTRERIRQIEKHALLELK 320
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>RPOS_YEREN (P47765) RNA polymerase sigma factor rpoS|
          Length = 331

 Score = 59.7 bits (143), Expect = 5e-09
 Identities = 31/87 (35%), Positives = 54/87 (62%)
 Frame = -1

Query: 512 GCTDVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKART 333
           G ++    +I +D++    E+T     MK+ + K L  L  ++REV+  RFG+   +A T
Sbjct: 229 GDSEKALLDILSDENENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAAT 288

Query: 332 LHDIGQLMGVSRERIRQIEMAAFRKLR 252
           L D+G+ +G++RER+RQI++   R+LR
Sbjct: 289 LEDVGREIGLTRERVRQIQVEGLRRLR 315
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>RPOD_BUCBP (Q89B10) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 609

 Score = 59.7 bits (143), Expect = 5e-09
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           +S+   +G  D ++  +   D + E   ++     ++      L  LT RE +V+R RFG
Sbjct: 501 ISMETPIGEDDDSHLGDFLEDTNIELPLDSATSASLRSATKNVLSGLTTREAKVLRMRFG 560

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +D     TL ++G+   V+RERIRQIE  A RKLR   +   L+ +L+
Sbjct: 561 IDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILRSFLD 608
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>RPOD_BUCAP (P32001) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 617

 Score = 58.9 bits (141), Expect = 9e-09
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           +S+   +G  D ++  +   D + E   ++     ++      L  LT RE +V+R RFG
Sbjct: 509 ISMETPIGDDDDSHLGDFIEDTTLELPLDSATSESLRSATHDVLSGLTAREAKVLRMRFG 568

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +D     TL ++G+   V+RERIRQIE  A RKLR   +   L+ +L+
Sbjct: 569 IDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 616
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>RPOD_BUCAI (P57163) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 612

 Score = 58.9 bits (141), Expect = 9e-09
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
 Frame = -1

Query: 533 VSLTGKVGCTDVTYQ-EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFG 357
           +S+   +G  D ++  +   D + E   ++     ++      L  LT RE +V+R RFG
Sbjct: 504 ISMETPIGDDDDSHLGDFIEDTTLELPLDSATSESLRSATHDVLSGLTAREAKVLRMRFG 563

Query: 356 MDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSLQHYLE 213
           +D     TL ++G+   V+RERIRQIE  A RKLR   +   L+ +L+
Sbjct: 564 IDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 611
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>RPOD_SHEVI (O24744) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 614

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 30/73 (41%), Positives = 44/73 (60%)
 Frame = -1

Query: 431 MKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
           ++    + L  LT RE +V+R RFG+D     TL ++G+   V+RERIRQIE  A RKLR
Sbjct: 541 LRNATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 600

Query: 251 SKKKVTSLQHYLE 213
              +   L+ +L+
Sbjct: 601 HPSRSEILKSFLD 613
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>RPOS_PSEAE (P45684) RNA polymerase sigma factor rpoS|
          Length = 334

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 29/78 (37%), Positives = 52/78 (66%)
 Frame = -1

Query: 485 ITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMG 306
           +T D+ T+  E  L    + + +D+ L  LT ++REV+  RFG+   ++ TL ++GQ +G
Sbjct: 243 LTDDRPTDPCE-LLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIG 301

Query: 305 VSRERIRQIEMAAFRKLR 252
           ++RER+RQI++ A ++LR
Sbjct: 302 LTRERVRQIQVEALKRLR 319
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>RPOD_SALTY (P0A2E3) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 615

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 30/65 (46%), Positives = 41/65 (63%)
 Frame = -1

Query: 407 LDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSL 228
           L  LT RE +V+R RFG+D     TL ++G+   V+RERIRQIE  A RKLR   +   L
Sbjct: 550 LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 609

Query: 227 QHYLE 213
           + +L+
Sbjct: 610 RSFLD 614
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>RPOD_SALTI (P0A2E4) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 615

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 30/65 (46%), Positives = 41/65 (63%)
 Frame = -1

Query: 407 LDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSL 228
           L  LT RE +V+R RFG+D     TL ++G+   V+RERIRQIE  A RKLR   +   L
Sbjct: 550 LAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 609

Query: 227 QHYLE 213
           + +L+
Sbjct: 610 RSFLD 614
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>RPOD_RICCN (Q92FZ8) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 634

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
 Frame = -1

Query: 554 MCLPRYSVSLTGKVGCTDVTYQ--EITADKSTETAEETLHRLFMKKDVDKALDSLTPRER 381
           M + +  +SL   VG      Q  +   DK+     +   +  +++   + L +LTPRE 
Sbjct: 504 MKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPIDAAIQSNLREVTTRVLATLTPREE 563

Query: 380 EVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKL----RSKK 243
            V+R RFG+      TL ++GQ   V+RERIRQIE  A RKL    RSKK
Sbjct: 564 RVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIRSKK 613
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>RPOD_RICPR (P33451) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 635

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
 Frame = -1

Query: 554 MCLPRYSVSLTGKVGCTDVTYQ--EITADKSTETAEETLHRLFMKKDVDKALDSLTPRER 381
           M + +  +SL   VG      Q  +   DK+     +   +  +++   + L +LTPRE 
Sbjct: 505 MKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPIDAAIQSNLREVTTRVLATLTPREE 564

Query: 380 EVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKL----RSKK 243
            V+R RFG+      TL ++GQ   V+RERIRQIE  A RKL    RSKK
Sbjct: 565 RVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQHPIRSKK 614
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>RPOD_SERMA (P43344) RNA polymerase sigma factor rpoD (Sigma-70) (Fragment)|
          Length = 215

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 30/65 (46%), Positives = 41/65 (63%)
 Frame = -1

Query: 407 LDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSL 228
           L  LT RE +V+R RFG+D     TL ++G+   V+RERIRQIE  A RKLR   +   L
Sbjct: 150 LAGLTAREXKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 209

Query: 227 QHYLE 213
           + +L+
Sbjct: 210 RSFLD 214
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>RPOD_ECOLI (P00579) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 613

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 30/65 (46%), Positives = 41/65 (63%)
 Frame = -1

Query: 407 LDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVTSL 228
           L  LT RE +V+R RFG+D     TL ++G+   V+RERIRQIE  A RKLR   +   L
Sbjct: 548 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVL 607

Query: 227 QHYLE 213
           + +L+
Sbjct: 608 RSFLD 612
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>HRDC_STRCO (P18184) RNA polymerase principal sigma factor hrdC|
          Length = 339

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
 Frame = -1

Query: 542 RYSVSLTGKVGCT-DVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRY 366
           R +VSL   V  T D    ++  D     A E      +  ++ +A+ +L PRE  ++  
Sbjct: 229 RDAVSLDTPVDETGDTVVGDLIPDTEVLRAPEVAEFQALAAELREAVGTLAPRESLILSL 288

Query: 365 RFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRS 249
           R+G+ DG+ RTL  + Q +G++RER+RQ+E  +   LR+
Sbjct: 289 RYGLHDGRPRTLQQVAQHVGLTRERVRQLEKESLAHLRA 327
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>RP32_ZYMMO (P50512) RNA polymerase sigma-32 factor|
          Length = 302

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 34/80 (42%), Positives = 49/80 (61%)
 Frame = -1

Query: 491 QEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQL 312
           QE   D+  E  EE+L R    K + +A+D L  RE+ ++  R   D+ K  TL ++ Q+
Sbjct: 211 QEPLQDQQIEEEEESLVR---HKLLIEAMDKLNDREKHILTERRLSDNPK--TLEELSQV 265

Query: 311 MGVSRERIRQIEMAAFRKLR 252
            GVSRER+RQIE+ AF KL+
Sbjct: 266 YGVSRERVRQIEVRAFDKLQ 285
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>RP32_HAEIN (P44404) RNA polymerase sigma-32 factor|
          Length = 281

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
 Frame = -1

Query: 476 DKSTETAEETLHRLFMKKDVDK---ALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMG 306
           DKS+  A E  +  F  +  ++   AL SL  R +++I+ R+ +DD KA TLHD+     
Sbjct: 201 DKSSNFAAELENENFESQATEQLGAALQSLDARSQDIIKARW-LDDNKA-TLHDLAAKYN 258

Query: 305 VSRERIRQIEMAAFRKLRS 249
           VS ERIRQ+E  A +KL+S
Sbjct: 259 VSAERIRQLETNALKKLKS 277
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>RPOS_VIBCH (O51804) RNA polymerase sigma factor rpoS (Sigma-38 factor)|
          Length = 335

 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 21/52 (40%), Positives = 37/52 (71%)
 Frame = -1

Query: 407 LDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
           LD L P+++EV+  RFG+   +  TL ++G+ + ++RER+RQI++   R+LR
Sbjct: 264 LDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLR 315
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>RP32_VIBCH (P50511) RNA polymerase sigma-32 factor|
          Length = 286

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 25/53 (47%), Positives = 35/53 (66%)
 Frame = -1

Query: 410 ALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
           AL SL  R + ++R R+ +DD    TL D+ ++ GVS ERIRQ+E  A RKL+
Sbjct: 229 ALASLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLK 280
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>RPOD_MYCGE (P47491) RNA polymerase sigma factor rpoD (Sigma-A)|
          Length = 497

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
 Frame = -1

Query: 533 VSLTGKVGCTDVT-YQEITADKSTETAEETLHRLFMKKDVDKALDS-LTPREREVIRYRF 360
           VSL   VG  + + + +   D   +T +E        + +D+ L++ L+ +E  ++R R 
Sbjct: 381 VSLDKTVGHDEESQFGDFVKDTDAQTPDEFTESRSNSEKIDELLNNNLSEQEELIVRMRI 440

Query: 359 GMDD-GKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
           GM    + +TL ++GQ + + RE+IRQIE  A RKLR
Sbjct: 441 GMPPYNEPKTLDEVGQKILIPREKIRQIENKAIRKLR 477
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>RP32_VIBVU (Q8DD54) RNA polymerase sigma-32 factor|
          Length = 285

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
 Frame = -1

Query: 524 TGKVGCTDVTYQEITADKSTETAEE---------TLHRLFMKKDVDKALDSLTPREREVI 372
           +  V    V Y E   DKS++ A+          T +RL M      AL SL  R + ++
Sbjct: 191 SSSVSTAPVLYLE---DKSSDVADNLEAQNWEAHTNNRLAM------ALASLDERSQHIV 241

Query: 371 RYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
           R R+ +DD KA TL D+ ++ GVS ERIRQ+E  A +KL+
Sbjct: 242 RSRW-LDDDKA-TLQDLAEMYGVSAERIRQLEKNAMKKLK 279
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>RP32_CAUCR (P48194) RNA polymerase sigma-32 factor|
          Length = 295

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 31/87 (35%), Positives = 47/87 (54%)
 Frame = -1

Query: 488 EITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLM 309
           E    + T  AE+    L M   +++A+  LT RER ++  R   DD    TL ++    
Sbjct: 205 EEQVSQETRVAEDEEKSLRMSL-LEEAMVELTDRERHILTERRLKDD--PTTLEELAAQY 261

Query: 308 GVSRERIRQIEMAAFRKLRSKKKVTSL 228
           GVSRER+RQIE+ AF KL+   +  ++
Sbjct: 262 GVSRERVRQIEVRAFEKLQKTMREAAI 288
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>RPSE_BACSU (P06222) RNA polymerase sigma-E factor precursor (Sigma-29) (P31)|
           (Stage II sporulation protein GB)
          Length = 239

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 20/61 (32%), Positives = 38/61 (62%)
 Frame = -1

Query: 428 KKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRS 249
           KK + KAL+ L  RE++++  RFG+   + +T  D+  +MG+S+  I ++E    ++LR 
Sbjct: 174 KKLLKKALEQLNEREKQIMELRFGLVGEEEKTQKDVADMMGISQSYISRLEKRIIKRLRK 233

Query: 248 K 246
           +
Sbjct: 234 E 234
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>RP32_SERMA (P50510) RNA polymerase sigma-32 factor|
          Length = 285

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
 Frame = -1

Query: 476 DKSTETAEETLHRLFMKKDVDK---ALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMG 306
           DKS++ AE      +     DK   AL+ L  R + +IR R+  DD K+ TL ++    G
Sbjct: 204 DKSSDFAEGIEEDNWESNAADKLAYALEGLDERSQHIIRARWLDDDNKS-TLQELADQYG 262

Query: 305 VSRERIRQIEMAAFRKLR 252
           VS ER+RQ+E  A +KL+
Sbjct: 263 VSAERVRQLEKNAMKKLK 280
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>RP35_BACTK (P62179) RNA polymerase sigma-35 factor precursor|
          Length = 239

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 23/77 (29%), Positives = 43/77 (55%)
 Frame = -1

Query: 476 DKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSR 297
           D  T+  E T+ R  + K    AL  L  RE++++  RFG+  G+ +T  D+  ++G+S+
Sbjct: 162 DIITKDLEATVDRHLLMK----ALHQLNDREKQIMELRFGLAGGEEKTQKDVADMLGISQ 217

Query: 296 ERIRQIEMAAFRKLRSK 246
             I ++E    ++LR +
Sbjct: 218 SYISRLEKRIIKRLRKE 234
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>RP35_BACCR (P62178) RNA polymerase sigma-35 factor precursor|
          Length = 239

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 23/77 (29%), Positives = 43/77 (55%)
 Frame = -1

Query: 476 DKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSR 297
           D  T+  E T+ R  + K    AL  L  RE++++  RFG+  G+ +T  D+  ++G+S+
Sbjct: 162 DIITKDLEATVDRHLLMK----ALHQLNDREKQIMELRFGLAGGEEKTQKDVADMLGISQ 217

Query: 296 ERIRQIEMAAFRKLRSK 246
             I ++E    ++LR +
Sbjct: 218 SYISRLEKRIIKRLRKE 234
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>RP35_BACAN (P62177) RNA polymerase sigma-35 factor precursor|
          Length = 239

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 23/77 (29%), Positives = 43/77 (55%)
 Frame = -1

Query: 476 DKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSR 297
           D  T+  E T+ R  + K    AL  L  RE++++  RFG+  G+ +T  D+  ++G+S+
Sbjct: 162 DIITKDLEATVDRHLLMK----ALHQLNDREKQIMELRFGLAGGEEKTQKDVADMLGISQ 217

Query: 296 ERIRQIEMAAFRKLRSK 246
             I ++E    ++LR +
Sbjct: 218 SYISRLEKRIIKRLRKE 234
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>RPSC_MYXXA (Q07083) RNA polymerase sigma-C factor|
          Length = 295

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
 Frame = -1

Query: 503 DVTYQEITADKSTETAEETLHRL---FMKKDVDKALDSLTPREREVIRYRFGMDDGKART 333
           D T+ +    +S    +E   R      ++ V +AL  L PRER +I  R  M D +  T
Sbjct: 192 DATHLDFVESESVSAVDEVADRQQANLTRELVQRALRRLDPRERFIIEQRV-MGDAEM-T 249

Query: 332 LHDIGQLMGVSRERIRQIEMAAFRKLR 252
           L ++G+  G SRER RQ+E+ A  KL+
Sbjct: 250 LSELGEHFGFSRERARQLEIRAKDKLK 276
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>RPOD_MYCPN (P78022) RNA polymerase sigma factor rpoD (Sigma-A)|
          Length = 499

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
 Frame = -1

Query: 533 VSLTGKVGCTDVT-YQEITADKSTETAEETLHRLFMKKDVDKALDS-LTPREREVIRYRF 360
           VSL   VG  + + + +   D   +  +E        + +D+ L++ L+ +E  ++R R 
Sbjct: 383 VSLDKTVGHDEESQFGDFVRDTDAQMPDEFTESRSNYEKIDELLNNCLSEQEELIVRMRI 442

Query: 359 GMDD-GKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
           GM    + +TL ++ Q + + RE+IRQIE  A RKLR
Sbjct: 443 GMPPYNETKTLDEVSQKIKIPREKIRQIETKAIRKLR 479
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>RP32_PROMI (P50509) RNA polymerase sigma-32 factor|
          Length = 284

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 23/53 (43%), Positives = 35/53 (66%)
 Frame = -1

Query: 410 ALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
           A+ +L  R +++IR R+  DD K+ TL ++    GVS ER+RQ+E  A +KLR
Sbjct: 228 AIKTLDERSQDIIRARWLEDDNKS-TLQELADKYGVSAERVRQLEKNAMKKLR 279
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>RP32_ENTCL (P50508) RNA polymerase sigma-32 factor|
          Length = 285

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 22/54 (40%), Positives = 36/54 (66%)
 Frame = -1

Query: 410 ALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRS 249
           A++ L  R +++IR R+  +D K+ TL ++    GVS ER+RQ+E  A +KLR+
Sbjct: 229 AMEGLDERSQDIIRARWLDEDNKS-TLQELADRYGVSAERVRQLEKNAMKKLRA 281
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>RP32_CITFR (P11539) RNA polymerase sigma-32 factor (Heat shock regulatory|
           protein)
          Length = 284

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 22/54 (40%), Positives = 36/54 (66%)
 Frame = -1

Query: 410 ALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRS 249
           A++ L  R +++IR R+  +D K+ TL ++    GVS ER+RQ+E  A +KLR+
Sbjct: 228 AMEGLDERSQDIIRARWLDEDNKS-TLQELADRYGVSAERVRQLEKNAMKKLRA 280
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>RPSK_BACSU (P12254) RNA polymerase sigma-K factor precursor (Sigma-27)|
          Length = 294

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
 Frame = -1

Query: 455 EETLHRLFMKKDVDKA---LDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIR 285
           E+ +  + +  +++K    +D L  RE+EVI  RFG+D  K +T  +I + +G+SR  + 
Sbjct: 207 EDVIDTIQLNMELEKVKQYIDILDDREKEVIVGRFGLDLKKEKTQREIAKELGISRSYVS 266

Query: 284 QIEMAAFRKL 255
           +IE  A  K+
Sbjct: 267 RIEKRALMKM 276
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>RP32_PSEAE (P42378) RNA polymerase sigma-32 factor|
          Length = 284

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 23/59 (38%), Positives = 39/59 (66%)
 Frame = -1

Query: 422 DVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSK 246
           ++ +AL+ L  R R++++ R+ + + KA TLHD+ +   VS ERIRQ+E  A  KL+ +
Sbjct: 225 NLHEALEGLDERSRDILQQRW-LSEEKA-TLHDLAEKYNVSAERIRQLEKNAMSKLKGR 281
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>RP32_ECOLI (P0AGB3) RNA polymerase sigma-32 factor (Heat shock regulatory|
           protein F33.4)
          Length = 284

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = -1

Query: 410 ALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRS 249
           A+  L  R +++IR R+  +D K+ TL ++    GVS ER+RQ+E  A +KLR+
Sbjct: 228 AMQGLDERSQDIIRARWLDEDNKS-TLQELADRYGVSAERVRQLEKNAMKKLRA 280
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>RP32_ECOL6 (P0AGB4) RNA polymerase sigma-32 factor (Heat shock regulatory|
           protein F33.4)
          Length = 284

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = -1

Query: 410 ALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRS 249
           A+  L  R +++IR R+  +D K+ TL ++    GVS ER+RQ+E  A +KLR+
Sbjct: 228 AMQGLDERSQDIIRARWLDEDNKS-TLQELADRYGVSAERVRQLEKNAMKKLRA 280
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>RP32_ECO57 (P0AGB5) RNA polymerase sigma-32 factor (Heat shock regulatory|
           protein F33.4)
          Length = 284

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = -1

Query: 410 ALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRS 249
           A+  L  R +++IR R+  +D K+ TL ++    GVS ER+RQ+E  A +KLR+
Sbjct: 228 AMQGLDERSQDIIRARWLDEDNKS-TLQELADRYGVSAERVRQLEKNAMKKLRA 280
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>RP32_BUCBP (Q89B27) RNA polymerase sigma-32 factor|
          Length = 287

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 22/56 (39%), Positives = 31/56 (55%)
 Frame = -1

Query: 419 VDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
           +  AL SL  R R +I  R+  D     TL +I    G+S ER+RQ+E  A +KL+
Sbjct: 227 LSNALSSLDERSRNIIHARWLDDSDHKMTLREIAHNYGISAERVRQLEKNAMKKLK 282
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>RP28_BACTK (P62181) RNA polymerase sigma-28 factor precursor|
          Length = 237

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
 Frame = -1

Query: 458 AEETLHRLFMKKDVDKA---LDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERI 288
           +E+ +  + +  +++K    +D L  RE+EVI  RFG+   K +T  +I + +G+SR  +
Sbjct: 152 SEDVIDMIQLSMELEKIKEYIDILDEREKEVIVKRFGLGLDKEKTQREIAKALGISRSYV 211

Query: 287 RQIEMAAFRKL 255
            +IE  A  K+
Sbjct: 212 SRIEKRALMKM 222
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>RP28_BACCR (P62180) RNA polymerase sigma-28 factor precursor|
          Length = 237

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
 Frame = -1

Query: 458 AEETLHRLFMKKDVDKA---LDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERI 288
           +E+ +  + +  +++K    +D L  RE+EVI  RFG+   K +T  +I + +G+SR  +
Sbjct: 152 SEDVIDMIQLSMELEKIKEYIDILDEREKEVIVKRFGLGLDKEKTQREIAKALGISRSYV 211

Query: 287 RQIEMAAFRKL 255
            +IE  A  K+
Sbjct: 212 SRIEKRALMKM 222
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>RP28_BACAN (P62182) RNA polymerase sigma-28 factor precursor|
          Length = 237

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
 Frame = -1

Query: 458 AEETLHRLFMKKDVDKA---LDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERI 288
           +E+ +  + +  +++K    +D L  RE+EVI  RFG+   K +T  +I + +G+SR  +
Sbjct: 152 SEDVIDMIQLSMELEKIKEYIDILDEREKEVIVKRFGLGLDKEKTQREIAKALGISRSYV 211

Query: 287 RQIEMAAFRKL 255
            +IE  A  K+
Sbjct: 212 SRIEKRALMKM 222
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>RPSB_STIAU (Q01624) RNA polymerase sigma-B factor|
          Length = 296

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 24/58 (41%), Positives = 36/58 (62%)
 Frame = -1

Query: 419 VDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSK 246
           V  AL  L PRER +I  R  + + +  TL ++G+  G SRER RQ+E+ A  KL+++
Sbjct: 224 VHMALMRLDPRERFIIEQR--VMNERPMTLKELGEHFGFSRERARQLEIRAKDKLKAE 279
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>RP32_BUCAI (O05385) RNA polymerase sigma-32 factor|
          Length = 284

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 22/56 (39%), Positives = 32/56 (57%)
 Frame = -1

Query: 419 VDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
           +  AL  L  R R +I  R+ +D  K  TL +I    G+S ER+RQ+E  A +KL+
Sbjct: 225 LSSALLRLDERSRHIIHARW-LDKNKKNTLQNIANNYGISAERVRQLEKNAMKKLK 279
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>RP32_BUCAP (Q8KA76) RNA polymerase sigma-32 factor|
          Length = 285

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 27/90 (30%), Positives = 46/90 (51%)
 Frame = -1

Query: 521 GKVGCTDVTYQEITADKSTETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGK 342
           GK+       Q+ T++ +    ++  ++    K +  AL  L  R R +IR R+ +D  +
Sbjct: 193 GKINGNMFYLQDKTSNFANGLEQDNWNKHTTSK-LSNALLRLDERSRNIIRARW-LDKKE 250

Query: 341 ARTLHDIGQLMGVSRERIRQIEMAAFRKLR 252
             TL  I    G+S ER+RQ+E  A +KL+
Sbjct: 251 KNTLQKIANNYGISAERVRQLEKNAMKKLK 280
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>RPSB_MYXXA (P19433) RNA polymerase sigma-B factor|
          Length = 246

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 24/58 (41%), Positives = 35/58 (60%)
 Frame = -1

Query: 419 VDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSK 246
           V  AL  L PRE  +I  R  + + +  TL ++G+  G SRER RQ+E+ A  KL+S+
Sbjct: 174 VRAALMRLDPREPFIIEQR--VMNERPMTLKELGEHFGFSRERARQLEIRAKDKLKSE 229
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>RP32_AGRTU (P50507) RNA polymerase sigma-32 factor|
          Length = 300

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 22/63 (34%), Positives = 35/63 (55%)
 Frame = -1

Query: 413 KALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKKVT 234
           KA+  L  RER +   R   +D    TL ++     +SRER+RQIE+ AF K++   +  
Sbjct: 230 KAMGVLNDRERRIFEARRLAEDPV--TLEELSSEFDISRERVRQIEVRAFEKVQEAVQKE 287

Query: 233 SLQ 225
           +L+
Sbjct: 288 ALE 290
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>RPSW_STRCO (P17211) RNA polymerase sigma factor whiG|
          Length = 280

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
 Frame = -1

Query: 521 GKVGCTDVTYQEITADKSTETAEET-LHRLFMKKDVDKALDSLTPREREVIRYRFGMDDG 345
           G++   D T ++  AD   E AE+  L RL  +     A+++L  RE+ V+   +     
Sbjct: 192 GRLSLMD-TLEDTAADNPVEVAEDRELRRLLAR-----AINTLPEREKTVVTLYYY---- 241

Query: 344 KARTLHDIGQLMGVSRERIRQIEMAAFRKLRSK 246
           +  TL +IG ++GV+  R+ QI   +  +LR+K
Sbjct: 242 EGLTLAEIGNVLGVTESRVSQIHTKSVLQLRAK 274
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>RPSE_CLOAB (P33657) RNA polymerase sigma-E factor|
          Length = 235

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
 Frame = -1

Query: 422 DVDK-----ALDSLTPREREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRK 258
           +VDK     AL  L  RE+ ++  R+G+     +T  ++  ++G+S+  I ++E    ++
Sbjct: 167 EVDKQLLLFALKKLNEREKRIVELRYGLTGVGEKTQKEVADMLGISQSYISRLEKRIIKR 226

Query: 257 LRSK 246
           L+ +
Sbjct: 227 LKKE 230
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>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)|
          Length = 637

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = -3

Query: 399 PDPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEGD 235
           PD S +G      R  + ++E +    A +GG++GE PA  +GR    +  EEGD
Sbjct: 345 PDRSPDGEAAASTRAAQPEAELSNHLAAEEGGQRGEGPA--NGRGEDGEASEEGD 397



 Score = 30.0 bits (66), Expect = 4.6
 Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
 Frame = -3

Query: 426 ERRGQGAGQPDPSGEGGYQVQVRDGRRQS-----EDAARHRAADGGEQ--GEDPADRDGR 268
           E +  GAG P P  E   +V   +    S     EDAA   AA   E    ED A  DG 
Sbjct: 257 EPQDLGAGSPQPRSEA-VEVAAAENEGHSPGESVEDAAAEEAAGTREPEGSEDAAGEDGD 315

Query: 267 LPQAQEQEEGDVATALPG 214
             + QE+ E       PG
Sbjct: 316 QGRPQEETEQQAERQEPG 333
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>PRP5_EMENI (Q5BDW4) Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC|
            3.6.1.-)
          Length = 1173

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
 Frame = -3

Query: 426  ERRGQGAGQPDPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQ 247
            E+   G  +   SG GG  ++  D  R +      R    GE+GED  ++D +  +  E+
Sbjct: 932  EKVKAGKEKASNSGFGGKGLERLDQERDAARMRERRTYKTGEEGEDEEEKDEKKNEQAEE 991

Query: 246  EEGDVATALPGAGREL------VDIAGRV 178
            +   V +A+     +L      +D+ G++
Sbjct: 992  QFNKVLSAVQSTSAQLPGVPKGIDLDGKI 1020
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>SEC62_MOUSE (Q8BU14) Translocation protein SEC62 (Translocation protein 1)|
           (TP-1)
          Length = 398

 Score = 32.7 bits (73), Expect = 0.72
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 17/79 (21%)
 Frame = -3

Query: 429 EERRGQGA-GQPDPSGEGGYQVQVRDGRRQSEDAARHRAADG----------------GE 301
           E+  G+GA     P G GG +    D  R+ +D ++H + +G                G+
Sbjct: 319 EDEEGKGAPADHGPEGSGGERHSDTDSDRREDDRSQHSSGNGNDFEMITKEELEQQTDGD 378

Query: 300 QGEDPADRDGRLPQAQEQE 244
             E+  D+DG +P++  ++
Sbjct: 379 CDEEDDDKDGEVPKSAHEK 397
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>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel|
           [Contains: Glutamic acid-rich protein (GARP);
           Cyclic-nucleotide-gated cation channel 4 (CNG channel 4)
           (CNG-4) (Cyclic nucleotide-gated cation channel
           modulatory subunit)]
          Length = 1394

 Score = 32.7 bits (73), Expect = 0.72
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
 Frame = -3

Query: 429 EERRGQGAGQPDPSGEG-----GYQVQVRDGRRQSEDAARHRAADGGE----QGEDPADR 277
           EE   +G  + +  GE      G + +  +G ++ E+       +GGE    +G +  + 
Sbjct: 368 EEEEEEGREKEEEEGEEKEEEEGREKEEEEGEKKEEEGREKEEEEGGEKEDEEGREKEEE 427

Query: 276 DGRLPQAQEQEEGDVATALPGAGRELVD 193
           +GR    +E+EEG       G G+E V+
Sbjct: 428 EGR---GKEEEEGGEKEEEEGRGKEEVE 452
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>AGO2_DROME (Q9VUQ5) Argonaute 2 protein|
          Length = 1214

 Score = 32.7 bits (73), Expect = 0.72
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -3

Query: 414 QGAGQPDPSG-EGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEG 238
           QG  Q    G EGGYQ Q   G++Q       +  +GG Q   P  + G   Q ++ +EG
Sbjct: 211 QGGHQQGRQGQEGGYQ-QRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGRQGQEG 269

Query: 237 DVATALPG 214
                 PG
Sbjct: 270 GYQQRPPG 277



 Score = 30.8 bits (68), Expect = 2.7
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 414 QGAGQPDPSG-EGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEG 238
           QG  Q    G EGGYQ Q   G++Q       +  +GG Q   P  + G   Q ++ +EG
Sbjct: 165 QGGHQQGRQGQEGGYQ-QRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGRQGQEG 223



 Score = 30.4 bits (67), Expect = 3.6
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 414 QGAGQPDPSG-EGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEG 238
           QG  Q    G EGGYQ Q   G++Q       +  +GG Q   P  + G   Q ++ +EG
Sbjct: 234 QGGHQQGRQGQEGGYQ-QRPPGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHEQGRQGQEG 292



 Score = 29.6 bits (65), Expect = 6.1
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -3

Query: 414 QGAGQPDPSG-EGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEG 238
           QG  Q    G EGGYQ Q   G++Q       +  +GG Q      + G   Q ++ +EG
Sbjct: 303 QGGHQQGRQGQEGGYQ-QRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEG 361

Query: 237 DVATALPG 214
                 PG
Sbjct: 362 GYQQRPPG 369



 Score = 29.3 bits (64), Expect = 7.9
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -3

Query: 414 QGAGQPDPSG-EGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEG 238
           QG  Q    G EGGYQ Q   G++Q       +  +GG Q      + G   Q ++ +EG
Sbjct: 188 QGGHQQGRQGQEGGYQ-QRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEG 246

Query: 237 DVATALPG 214
                 PG
Sbjct: 247 GYQQRPPG 254



 Score = 29.3 bits (64), Expect = 7.9
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -3

Query: 414 QGAGQPDPSG-EGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEG 238
           QG  Q    G EGGYQ Q   G++Q       +  +GG Q      + G   Q ++ +EG
Sbjct: 142 QGGHQQGRQGQEGGYQ-QRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGRQGQEG 200

Query: 237 DVATALPG 214
                 PG
Sbjct: 201 GYQQRPPG 208



 Score = 29.3 bits (64), Expect = 7.9
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 414 QGAGQPDPSGE-GGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEG 238
           QG  Q    G+ GGYQ Q   G++Q       +  +GG Q   P  + G   Q ++ +EG
Sbjct: 119 QGGHQQGRQGQDGGYQ-QRPPGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGRQGQEG 177
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>PRP5_ASPFU (Q4WT99) Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC|
            3.6.1.-)
          Length = 1211

 Score = 32.3 bits (72), Expect = 0.94
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
 Frame = -3

Query: 426  ERRGQGAGQPDPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQ 247
            E+   G  +   SG GG  ++  D  R +      R    GE+GED  D++ +  +A E+
Sbjct: 966  EKVKAGKEKASASGFGGKGLERLDQERDAARMRERRTYKTGEEGEDEEDKEDKAEKADER 1025

Query: 246  EEGDVA----------TALPGAGRELVDIAGRV 178
                V+          T LPG  +  +D+ G++
Sbjct: 1026 FSKIVSSVQSAAAAATTPLPGVPKG-IDLDGKI 1057
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>GATE_SULAC (Q4J945) Glutamyl-tRNA(Gln) amidotransferase subunit E (EC 6.3.5.-)|
           (Glu-ADT subunit E)
          Length = 634

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = -1

Query: 518 KVGCTDVTYQEITADKSTETAEETLHRL----FMKKDVDKALDSLTPREREVIRYRFG 357
           K+G   +  +E  A K +E+A ET++ L        ++  A D  TP E E + +R G
Sbjct: 149 KIGIQTIALEEDAARKISESANETMYSLDRLGIPLIEISTAPDITTPEEAEKVAFRIG 206
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>VGLD_BHV1P (P24906) Glycoprotein D precursor (Glycoprotein IV)|
          Length = 417

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = -3

Query: 429 EERRGQGAGQPDPSGEGGYQV-----QVRDGRRQSEDAARHRAADGGEQGEDPADRDGRL 265
           EE +G    +P P+ +GG        + R+   ++ED A  R  +GG  G +  D + + 
Sbjct: 259 EESKGY---EPPPAADGGSPAPPGDDEAREDEGETEDGAAGREGNGGPPGPE-GDGESQT 314

Query: 264 PQAQEQEEGD 235
           P+A    EG+
Sbjct: 315 PEANGGAEGE 324
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>CDN1C_MOUSE (P49919) Cyclin-dependent kinase inhibitor 1C (Cyclin-dependent|
           kinase inhibitor p57) (p57KIP2)
          Length = 348

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
 Frame = -3

Query: 399 PDPSGEGGYQVQVRDGRRQ-----SEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEGD 235
           PDP  +    V  RDG  Q     SE      A  G E G +P    G    A+  EE D
Sbjct: 181 PDPIPDANPDVATRDGEEQVPEQVSEQGEESGAEPGDELGTEPVSEQGEEQGAEPVEEKD 240
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>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = -3

Query: 429  EERRGQGAGQPDPSGEGGYQVQVRDGRRQSEDA-ARHRAADGGEQGEDPADRDGRLPQAQ 253
            E  RG+ AG+   SG   YQV   +   QSE A  R   + GG QG            + 
Sbjct: 3694 ESTRGRSAGRSGRSGSFLYQVSTHE---QSESAHGRAGPSTGGRQGSRHEQARDSSRHSA 3750

Query: 252  EQEEGDVATALPGAGR 205
             QE  D     PG+ R
Sbjct: 3751 SQEGQDTIRGHPGSRR 3766



 Score = 30.4 bits (67), Expect = 3.6
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = -3

Query: 429  EERRGQGAGQPDPSGEGGYQVQVRDGRRQSEDA-ARHRAADGGEQGEDPADRDGRLPQAQ 253
            E  RG+ AG+   SG   YQV   +   QSE A  R   + GG QG            + 
Sbjct: 2398 ESTRGRSAGRSGRSGSFLYQVSTHE---QSESAHGRTGTSTGGRQGSHHKQARDSSRHST 2454

Query: 252  EQEEGDVATALPGA 211
             QE  D     PG+
Sbjct: 2455 SQEGQDTIHGHPGS 2468
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>KPC1_TRIRE (Q99014) Protein kinase C-like (EC 2.7.11.13)|
          Length = 1139

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = -3

Query: 423 RRGQGAGQPDPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQE 244
           R G  +G  DP G+G Y       +    + A +   D G   + PA +  R PQ Q+Q+
Sbjct: 681 RTGYDSGPQDPYGQGHYGAAGPAPQHHKYNPADYANVDQGFPAQPPAQQ--RPPQPQQQQ 738

Query: 243 EGDVATALP 217
           +   A   P
Sbjct: 739 QAPPAQMPP 747
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>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = -3

Query: 423 RRGQGAGQPDPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQE 244
           RR +G G P   G GG +   R G+R+  +     AAD  E+ +   D D    +A+ + 
Sbjct: 305 RRRRGGGPP---GRGGRR---RGGKRRRAEGTEAAAADAEEEEDGDGDEDEDEDRAEGEG 358

Query: 243 EGDVATALPGAG 208
             D      GAG
Sbjct: 359 REDGGEGPRGAG 370
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>VGLD_BHV1S (Q08100) Glycoprotein D precursor (Glycoprotein IV)|
          Length = 417

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = -3

Query: 429 EERRGQGAGQPDPSGEGGYQV-----QVRDGRRQSEDAARHRAADGGEQGEDPADRDGRL 265
           EE +G    +P P+ +GG        + R+   ++ED A  R  +GG  G +  D +   
Sbjct: 259 EESKGY---EPPPAADGGSPAPPGDDEAREDEGETEDGAAGREGNGGPPGPE-GDGESPT 314

Query: 264 PQAQEQEEGD 235
           P+A    EG+
Sbjct: 315 PEANGGAEGE 324
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>CENPB_MOUSE (P27790) Major centromere autoantigen B (Centromere protein B)|
           (CENP-B)
          Length = 599

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/63 (22%), Positives = 28/63 (44%)
 Frame = -3

Query: 429 EERRGQGAGQPDPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQE 250
           EE   +   + +  GEG       +   + E+       +G E+GE+  + +G +  + E
Sbjct: 409 EEEEEEEEEEEEEEGEG-------EEEEEEEEEGEEEGGEGEEEGEEEVEEEGEVDDSDE 461

Query: 249 QEE 241
           +EE
Sbjct: 462 EEE 464
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>DRS1_ASPOR (Q2UQI6) ATP-dependent RNA helicase drs1 (EC 3.6.1.-)|
          Length = 820

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -3

Query: 426 ERRGQGAGQPDPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDG 271
           E   +G+G  D + +GG  V  +D    +ED     A    E G+  A   G
Sbjct: 172 ESEDEGSGNEDDASDGGMSVDFQDDELMAEDGFGMGADGEDESGQSDAQESG 223
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>KC1G3_HUMAN (Q9Y6M4) Casein kinase I isoform gamma-3 (EC 2.7.11.1) (CKI-gamma|
           3)
          Length = 447

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
 Frame = -3

Query: 411 GAGQPDPSGEGGYQV-QVRDGRRQSED-AARHRAADGGEQGED-------PADRDGRLPQ 259
           GA Q DP+     +  Q RD  +QS++ +A HRAA   +Q           ADR G   Q
Sbjct: 335 GAVQQDPALSSNREAHQHRDKMQQSKNQSADHRAAWDSQQANPHHLRAHLAADRHGGSVQ 394

Query: 258 AQEQEEGDVATALPGAGR 205
                 G++ T  P AGR
Sbjct: 395 VVSSTNGELNTDDPTAGR 412
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>PTMA_BOVIN (P01252) Prothymosin alpha [Contains: Thymosin alpha-1]|
          Length = 109

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 357 DGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEGDVAT 226
           +G +++++       +GGE+ E+  + DG      E EE + AT
Sbjct: 42  NGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAEAAT 85
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>YAWH_SCHPO (Q10191) Hypothetical protein C3F10.17 in chromosome I|
          Length = 386

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = -1

Query: 470 STETAEETLHRLFMKKDVDKALDSLTPREREVIRYRFGMDDGKARTLHDIGQ-LMGVSRE 294
           S ET  +T  RL  +   ++   ++ P E E   Y    DD    T +D  Q L  +  E
Sbjct: 39  SAETLNKTARRLNRQTLDEEYGSTIRPNEGEAANYGIYFDD----TEYDYMQHLRNIGNE 94

Query: 293 RIRQIEMAAFRKLRSKKKVTSLQHYLEPA 207
               +E  A RK + K+K   +Q   +P+
Sbjct: 95  DATWVEAPATRKTQDKQKKQQIQLRDQPS 123
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>PHOSP_SENDA (Q9DUE2) Phosphoprotein (Protein P)|
          Length = 568

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 26/72 (36%), Positives = 32/72 (44%)
 Frame = -3

Query: 396 DPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEGDVATALP 217
           DP  EGGY       R  +ED  R  AA+  ++GED A+    LP     EE   +  LP
Sbjct: 139 DPPNEGGYP------RSGAEDENREMAANPDKRGEDQAE---GLP-----EEIRRSAPLP 184

Query: 216 GAGRELVDIAGR 181
             G    D  GR
Sbjct: 185 DEGEGRADNNGR 196
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>W_SENDA (P69286) Protein W|
          Length = 318

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 26/72 (36%), Positives = 32/72 (44%)
 Frame = -3

Query: 396 DPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEGDVATALP 217
           DP  EGGY       R  +ED  R  AA+  ++GED A+    LP     EE   +  LP
Sbjct: 139 DPPNEGGYP------RSGAEDENREMAANPDKRGEDQAE---GLP-----EEIRRSAPLP 184

Query: 216 GAGRELVDIAGR 181
             G    D  GR
Sbjct: 185 DEGEGRADNNGR 196
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>CD99_HUMAN (P14209) CD99 antigen precursor (T-cell surface glycoprotein E2)|
           (E2 antigen) (MIC2 protein) (12E7)
          Length = 185

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 315 ADGGEQGEDPADRDGRLPQAQEQEEGDVATALPG-AGRELVDIAGRVMS 172
           ADG   GE     DG     +E EE D    +PG  G  +V +AG + S
Sbjct: 96  ADGVSGGEGKGGSDGGGSHRKEGEEADAPGVIPGIVGAVVVAVAGAISS 144
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>V_SENDA (Q9DUE1) Protein V|
          Length = 369

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 26/72 (36%), Positives = 32/72 (44%)
 Frame = -3

Query: 396 DPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEGDVATALP 217
           DP  EGGY       R  +ED  R  AA+  ++GED A+    LP     EE   +  LP
Sbjct: 139 DPPNEGGYP------RSGAEDENREMAANPDKRGEDQAE---GLP-----EEIRRSAPLP 184

Query: 216 GAGRELVDIAGR 181
             G    D  GR
Sbjct: 185 DEGEGRADNNGR 196
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>PRP5_ASPOR (Q2U2J6) Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC|
            3.6.1.-)
          Length = 1186

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
 Frame = -3

Query: 426  ERRGQGAGQPDPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQ 247
            E+   G  +   SG GG  ++  D  R +      +    G++GE+  +++ +  +A+EQ
Sbjct: 945  EKVKAGKEKASASGFGGKGLERLDQERDAARMRERKTYKTGDEGEEEEEKEEKNEKAEEQ 1004

Query: 246  -------EEGDVATALPGAGRELVDIAGRV 178
                    +   A +LPG  +  +D+ G++
Sbjct: 1005 FNKVLSSVQSAAAPSLPGVPKG-IDLDGKI 1033
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>RS6_BRUME (Q8YFP0) 30S ribosomal protein S6|
          Length = 148

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 360 RDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEG 238
           RD RR+ +   R R  +GG    D  DR  R P+  E  EG
Sbjct: 107 RDDRRERDGDDRPRRREGGFDRGDRGDRGPRRPRDNEAGEG 147
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>RS6_BRUAB (Q57ER2) 30S ribosomal protein S6|
          Length = 148

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 360 RDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEG 238
           RD RR+ +   R R  +GG    D  DR  R P+  E  EG
Sbjct: 107 RDDRRERDGDDRPRRREGGFDRGDRGDRGPRRPRDNEAGEG 147
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>RS6_BRUA2 (Q2YMG9) 30S ribosomal protein S6|
          Length = 148

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 360 RDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEG 238
           RD RR+ +   R R  +GG    D  DR  R P+  E  EG
Sbjct: 107 RDDRRERDGDDRPRRREGGFDRGDRGDRGPRRPRDNEAGEG 147
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>DSRAD_HUMAN (P55265) Double-stranded RNA-specific adenosine deaminase (EC|
           3.5.4.-) (DRADA) (136 kDa double-stranded RNA-binding
           protein) (P136) (K88DSRBP) (Interferon-inducible protein
           4) (IFI-4 protein)
          Length = 1226

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 11/50 (22%), Positives = 30/50 (60%)
 Frame = -1

Query: 389 REREVIRYRFGMDDGKARTLHDIGQLMGVSRERIRQIEMAAFRKLRSKKK 240
           +E+ ++++   + +GKA T HD+   +G  ++ I ++  +  +K + +K+
Sbjct: 139 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 188
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>ISW2_ORYSA (Q7G8Y3) Putative chromatin remodelling complex ATPase chain (EC|
           3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2
           homolog)
          Length = 1107

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = -3

Query: 429 EERRGQGAGQPDPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGE-DPADRDGRLPQA- 256
           EE +  GAG    SG G    +  D   +   AA    A GGE+ E D  + +     A 
Sbjct: 21  EEEQSDGAG----SGSG----EEEDEEEEEAPAAAAGEAAGGEEEEVDEEEIEAVTTGAG 72

Query: 255 --QEQEEGDVATALPGAGRE 202
             +E+EE   A A PG G E
Sbjct: 73  ADEEEEESGAAAAAPGEGDE 92
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>IF2_ENTFC (P18311) Translation initiation factor IF-2|
          Length = 784

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
 Frame = -3

Query: 420 RGQGAGQPDP----------SGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDG 271
           RGQG+GQ +           S  GG   Q R G  QS +  R  +  GG Q    +++ G
Sbjct: 94  RGQGSGQVNQGKNQSTNQNRSNNGGGNNQNRQGATQSGNQNRQGSTQGGNQNRQGSNQGG 153

Query: 270 RLPQAQEQEEG 238
              +      G
Sbjct: 154 NQNRNNNNNRG 164
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>PTMA_HUMAN (P06454) Prothymosin alpha [Contains: Thymosin alpha-1]|
          Length = 110

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 357 DGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEGDVAT 226
           +G +++++       +GGE+ E+  + DG      E EE + AT
Sbjct: 43  NGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESAT 86
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>TXND3_ANTCR (P90666) Thioredoxin domain-containing protein 3 homolog|
           (Intermediate chain 1)
          Length = 837

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
 Frame = -3

Query: 393 PSGEG----GYQVQVRDGRRQSE--DAARHRAADGGE-QGEDPADRDGRLP---QAQEQE 244
           P+GEG      Q     G +Q+E  + A   A +GGE Q E P    G  P   + Q+ +
Sbjct: 662 PAGEGEEQQAEQPAAESGEQQAEGGEPATETATEGGEQQAEQPPAEGGEKPAEEETQQTQ 721

Query: 243 EGDVATA 223
           EG+   A
Sbjct: 722 EGETPAA 728
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>KC1G3_RAT (Q62763) Casein kinase I isoform gamma-3 (EC 2.7.11.1) (CKI-gamma|
           3)
          Length = 448

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
 Frame = -3

Query: 411 GAGQPDPSGEGGYQV-QVRDGRRQSED-AARHRAADGGEQGED-------PADRDGRLPQ 259
           GA Q DP+     +  Q RD  +QS++ +A HRAA   +Q           ADR G   Q
Sbjct: 336 GAVQQDPALSSNREAHQHRDKIQQSKNQSADHRAAWDSQQANPHHLRAHLAADRHGGSVQ 395

Query: 258 AQEQEEGDVATALPGAGR 205
                 G++ T  P AGR
Sbjct: 396 VVSSTNGELNTDDPTAGR 413
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>ZCHC3_HUMAN (Q9NUD5) Zinc finger CCHC domain-containing protein 3|
          Length = 404

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 28/80 (35%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
 Frame = -3

Query: 408 AGQPDPSGE----GGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQE--- 250
           AG+ DP G      G  V  R  +  +E   R +A         PA R G    A E   
Sbjct: 92  AGRGDPKGRRRDPAGEAVDPRKKKGAAEAGRRKKAEAAAAAMATPA-RPGEAEDAAERPL 150

Query: 249 QEEGDVATALPGAGRELVDI 190
           Q+E   A A PG GR LV I
Sbjct: 151 QDEPAAAAAGPGKGRFLVRI 170
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>CDC28_SCHPO (Q10752) Putative ATP-dependent RNA helicase cdc28 (EC 3.6.1.-)|
          Length = 1055

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
 Frame = -1

Query: 494 YQEITADKSTETAEE-TLHRLFMKKDVDKALDSLTPR-----EREVIRYRFGMDDGKART 333
           Y+E+    ++   EE ++   F   D +K+ D  T R     ERE    R    D +A T
Sbjct: 141 YEEVVDGSASHPIEEDSVSTDFQNHDYEKSSDPETERLNDLREREEFEERLRRKDLEAAT 200

Query: 332 ---LHDIGQLMGVSRERIRQI--EMAAFRKLRSKKKVTSLQHYLEP 210
              + D           +R++  +  ++RKL S+ +  S Q YL+P
Sbjct: 201 NEFVEDYSSKFSSEELALRKLADDPESWRKLASELRKKSRQQYLKP 246
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>PTMA_PONPY (Q5R790) Prothymosin alpha [Contains: Thymosin alpha]|
          Length = 109

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 357 DGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEGDVAT 226
           +G +++++       +GGE+ E+  + DG      E EE + AT
Sbjct: 42  NGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESAT 85
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>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
 Frame = -3

Query: 426 ERRGQGAGQPDPSG----EGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPA---DRDGR 268
           +R+G GAG P P G    +GG + Q   G  Q    A  +   GG +   PA      G+
Sbjct: 266 QRQGAGAGGPRPQGGPRPQGGSRPQ--GGSAQGAQGAPSQERQGGGRRPSPAMMPPTPGQ 323

Query: 267 LPQAQEQEEGDVATALPGAG 208
           +P     + G    A  GAG
Sbjct: 324 MPAKAPGKGGRGGQAGGGAG 343
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>CWC25_GIBZE (Q4IRI9) Pre-mRNA-splicing factor CWC25|
          Length = 393

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = -3

Query: 432 HEERRGQGAGQPDPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQ 253
           H  RR     Q     +G  + + R  R  S D    R  DG ++ E   DRD R    +
Sbjct: 200 HRRRRSYSRSQSPRRRDGSREDRHRRRRDDSRDRHSRRRRDGSDE-EGRRDRDNRSGGDR 258

Query: 252 EQEEGD 235
            + +GD
Sbjct: 259 HRHDGD 264
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>RS6_BRUSU (Q8G274) 30S ribosomal protein S6|
          Length = 148

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 360 RDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEEG 238
           RD RR+ +   R R  +GG    D  DR  R P+  E  EG
Sbjct: 107 RDDRRERDGDDRPRRREGGFDRGDRGDRGPRRPRDTEAGEG 147
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>PHOSP_SENDO (O57285) Phosphoprotein (Protein P)|
          Length = 568

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
 Frame = -3

Query: 396 DPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPAD-------RDGRLPQAQE 250
           DP  EGGY       R  +ED  R  AA+  ++GED A+       R   LP  +E
Sbjct: 139 DPPNEGGYP------RSGAEDENREMAANPDKRGEDQAEGLPEEIRRSAPLPDERE 188
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>VE4_HPV1A (P06923) Probable protein E4|
          Length = 84

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 351 RRQSEDAARHRAADGGEQGEDPADRDGRLPQAQEQEE 241
           RR  +D+ +H  ADG   GEDP      +P+ +++E+
Sbjct: 48  RRSDKDSRKHLYADGLTDGEDP-----EVPEVEDEEK 79
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>PRPH_MESAU (P06680) Acidic proline-rich protein HP43A precursor|
          Length = 183

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = -3

Query: 438 TVHEERRGQGAGQPDPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPADRDGRLPQ 259
           T++E+   Q   + +  G+   Q+  R G+   + +A        E+G+D  + DG  P+
Sbjct: 16  TIYEDSISQ-LSEEEQQGQDPGQLHQRPGQFPPQPSA------SDEEGDDDGEEDGNAPE 68

Query: 258 AQEQEEGD 235
              Q+ GD
Sbjct: 69  GPPQQGGD 76
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>W_SENDO (P69288) Protein W|
          Length = 318

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
 Frame = -3

Query: 396 DPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPAD-------RDGRLPQAQE 250
           DP  EGGY       R  +ED  R  AA+  ++GED A+       R   LP  +E
Sbjct: 139 DPPNEGGYP------RSGAEDENREMAANPDKRGEDQAEGLPEEIRRSAPLPDERE 188
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>V_SENDO (P69287) Protein V|
          Length = 369

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
 Frame = -3

Query: 396 DPSGEGGYQVQVRDGRRQSEDAARHRAADGGEQGEDPAD-------RDGRLPQAQE 250
           DP  EGGY       R  +ED  R  AA+  ++GED A+       R   LP  +E
Sbjct: 139 DPPNEGGYP------RSGAEDENREMAANPDKRGEDQAEGLPEEIRRSAPLPDERE 188


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,243,613
Number of Sequences: 219361
Number of extensions: 1057577
Number of successful extensions: 4702
Number of sequences better than 10.0: 156
Number of HSP's better than 10.0 without gapping: 4373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4666
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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