>POL_HV1U4 (P24740) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1427

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 39  ENKRMAVNTVGRLFCIL*NTQHLLYHDEEERLRKLEGMGC*SKKRRCHIAYNXGTT 206
           E  R   NTV  L+C+    Q +   D +E L K+E M   +K+R    A N G++
Sbjct: 72  EELRSLYNTVAVLYCV---HQRIDVKDTKEALNKIEEMQNKNKQRTQQAAANTGSS 124

>GAG_HV1U4 (P24736) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 492

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +3

Query: 39  ENKRMAVNTVGRLFCIL*NTQHLLYHDEEERLRKLEGMGC*SKKRRCHIAYNXGTT 206
           E  R   NTV  L+C+    Q +   D +E L K+E M   +K+R    A N G++
Sbjct: 72  EELRSLYNTVAVLYCV---HQRIDVKDTKEALNKIEEMQNKNKQRTQQAAANTGSS 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,206,377
Number of Sequences: 219361
Number of extensions: 434520
Number of successful extensions: 691
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)