ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13e10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1300 bits (656), Expect = 0.0 Identities = 690/696 (99%), Gaps = 4/696 (0%) Strand = Plus / Minus Query: 2 tatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1684 tatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 1625 Query: 62 -gtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1624 tgtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 1565 Query: 121 t-cgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 179 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 ttcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 1505 Query: 180 ca-cgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgg 238 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1504 catcgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgg 1445 Query: 239 gtgt-gtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 297 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1444 gtgttgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 1385 Query: 298 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1384 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 1325 Query: 358 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1324 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 1265 Query: 418 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1264 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 1205 Query: 478 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1204 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 1145 Query: 538 aaaagtcaatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactga 597 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct: 1144 aaaagtcaatggattgtcctgggaaggtgtcgacgatctttacgacagactcgtcacaga 1085 Query: 598 cattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagccc 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1084 cattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagccc 1025 Query: 658 agtagaacttctccatacgaccatcacggatcagag 693 |||||||||||||||||||||||||||||||||||| Sbjct: 1024 agtagaacttctccatacgaccatcacggatcagag 989
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 1072 bits (541), Expect = 0.0 Identities = 654/689 (94%), Gaps = 7/689 (1%) Strand = Plus / Minus Query: 11 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 64 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687 Query: 65 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 124 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628 Query: 125 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 184 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568 Query: 185 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 244 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 567 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 508 Query: 245 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 304 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 507 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 448 Query: 305 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 388 Query: 365 ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 424 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 387 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 328 Query: 425 ggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtaga 484 |||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct: 327 ggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtaga 268 Query: 485 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 544 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 267 ggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 208 Query: 545 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 604 |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 207 gatggattgtcctgggaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtc 148 Query: 605 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 664 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 147 ggtctggaagatacccttgcagacaccgatacggtcgtcgcgggtgggagcccagtagaa 88 Query: 665 cttctccatacgaccatcacggatcagag 693 ||||||||||||||||||||||||||||| Sbjct: 87 cttctccatacgaccatcacggatcagag 59
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 1072 bits (541), Expect = 0.0 Identities = 654/689 (94%), Gaps = 7/689 (1%) Strand = Plus / Minus Query: 11 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 64 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537 Query: 65 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 124 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478 Query: 125 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 184 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418 Query: 185 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 244 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358 Query: 245 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 304 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298 Query: 305 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238 Query: 365 ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 424 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 1237 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 1178 Query: 425 ggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtaga 484 |||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct: 1177 ggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtaga 1118 Query: 485 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 544 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1117 ggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 1058 Query: 545 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 604 |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 1057 gatggattgtcctgggaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtc 998 Query: 605 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 664 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 997 ggtctggaagatacccttgcagacaccgatacggtcgtcgcgggtgggagcccagtagaa 938 Query: 665 cttctccatacgaccatcacggatcagag 693 ||||||||||||||||||||||||||||| Sbjct: 937 cttctccatacgaccatcacggatcagag 909
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 844 bits (426), Expect = 0.0 Identities = 432/434 (99%) Strand = Plus / Minus Query: 260 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 320 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 380 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988 Query: 440 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928 Query: 500 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 868 Query: 560 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 619 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 867 gaaggtgtcgacgatctttacgacagactcgtcacagacattgtcggtctggaagatacc 808 Query: 620 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 748 Query: 680 atcacggatcagag 693 |||||||||||||| Sbjct: 747 atcacggatcagag 734 Score = 420 bits (212), Expect = e-114 Identities = 212/212 (100%) Strand = Plus / Minus Query: 1 atatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggactta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1376 atatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggactta 1317 Query: 61 ggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1316 ggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 1257 Query: 121 tcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1256 tcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggc 1197 Query: 181 acgggcaaagtaccttgctgtgctcctttacc 212 |||||||||||||||||||||||||||||||| Sbjct: 1196 acgggcaaagtaccttgctgtgctcctttacc 1165
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 819 bits (413), Expect = 0.0 Identities = 609/671 (90%), Gaps = 9/671 (1%) Strand = Plus / Minus Query: 25 catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 78 ||||||||||| ||||||| ||||||||||| |||||||| || |||||||||| Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534 Query: 79 -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 137 || | |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474 Query: 138 tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 197 ||||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414 Query: 198 ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 257 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||| Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttc 1356 Query: 258 taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 317 |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296 Query: 318 ctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatg 377 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatg 1236 Query: 378 tgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccg 437 || |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||| Sbjct: 1235 tggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccg 1176 Query: 438 tcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttg 497 |||||||||||||||||||||||||| |||||||| |||||||| || ||||||||| Sbjct: 1175 tcccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttg 1116 Query: 498 cgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcct 557 ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 1115 cgcacctcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcct 1056 Query: 558 gggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagata 617 ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 1055 gggaangtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagata 996 Query: 618 cccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacga 677 ||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct: 995 cccttgcagacgccgatacggtcctcgcgggtgggcgcccagtagaacttctccatacga 936 Query: 678 ccatcacggat 688 || |||||||| Sbjct: 935 ccgtcacggat 925
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 664 bits (335), Expect = 0.0 Identities = 335/335 (100%) Strand = Plus / Minus Query: 210 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 270 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236 Query: 330 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176 Query: 390 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116 Query: 450 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 7056 Query: 510 tcgtacacccgagcacgcagagcaccgaaaaagtc 544 ||||||||||||||||||||||||||||||||||| Sbjct: 7055 tcgtacacccgagcacgcagagcaccgaaaaagtc 7021 Score = 424 bits (214), Expect = e-115 Identities = 214/214 (100%) Strand = Plus / Minus Query: 1 atatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggactta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7736 atatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggactta 7677 Query: 61 ggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7676 ggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 7617 Query: 121 tcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7616 tcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggc 7557 Query: 181 acgggcaaagtaccttgctgtgctcctttacctc 214 |||||||||||||||||||||||||||||||||| Sbjct: 7556 acgggcaaagtaccttgctgtgctcctttacctc 7523 Score = 297 bits (150), Expect = 3e-77 Identities = 150/150 (100%) Strand = Plus / Minus Query: 544 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6880 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 6821 Query: 604 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtaga 663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6820 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtaga 6761 Query: 664 acttctccatacgaccatcacggatcagag 693 |||||||||||||||||||||||||||||| Sbjct: 6760 acttctccatacgaccatcacggatcagag 6731 Score = 141 bits (71), Expect = 3e-30 Identities = 173/207 (83%) Strand = Plus / Minus Query: 485 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 544 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753 Query: 545 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 604 ||||| || || ||||||||||| || | | | || || | |||||| ||| ||||| Sbjct: 3752 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 3693 Query: 605 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 664 ||| ||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||| Sbjct: 3692 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagtagaa 3633 Query: 665 cttctccatacgaccatcacggatcag 691 ||||||||| || || ||||||||||| Sbjct: 3632 cttctccatgcgcccgtcacggatcag 3606 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 336 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 395 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 396 ttctcgactgtcatctttggctgctcgaa 424 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 579 bits (292), Expect = e-162 Identities = 388/420 (92%) Strand = Plus / Minus Query: 260 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 319 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 320 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 379 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 380 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 439 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184 Query: 440 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 499 |||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124 Query: 500 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 559 |||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 1123 cacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctgg 1064 Query: 560 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 619 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 1063 gaaggtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagatacc 1004 Query: 620 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 679 ||||||||| ||||||||||| || |||||||| |||||||| ||||||||||||||||| Sbjct: 1003 cttgcagacgccgatacggtcctcgcgggtgggcgcccagtaaaacttctccatacgacc 944 Score = 176 bits (89), Expect = 6e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 84 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 143 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 144 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 203 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 204 tcctttacc 212 ||||||||| Sbjct: 1369 tcctttacc 1361
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 521 bits (263), Expect = e-145 Identities = 296/307 (96%) Strand = Plus / Minus Query: 238 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 297 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 298 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 358 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 418 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 477 |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| | Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69 Query: 478 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 537 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 68 cggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccga 9 Query: 538 aaaagtc 544 ||||||| Sbjct: 8 aaaagtc 2
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 489 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 548 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027 Query: 549 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 608 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1026 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 967 Query: 609 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 668 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 966 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 907 Query: 669 tccatacgaccatcacggat 688 |||||||| || |||||||| Sbjct: 906 tccatacgcccgtcacggat 887 Score = 133 bits (67), Expect = 9e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 93 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 153 ggcattttggtcggtgcaaccttccggcacgggca 187 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 259 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 318 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 319 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 378 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 379 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 438 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137 Query: 439 cccgcgagttcaccagcctcttgccaatgttctc 472 ||| |||||||||||||||||||||||||||||| Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 489 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 548 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022 Query: 549 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 608 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1021 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 962 Query: 609 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 668 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 961 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 902 Query: 669 tccatacgaccatcacggat 688 |||||||| || |||||||| Sbjct: 901 tccatacgcccgtcacggat 882 Score = 133 bits (67), Expect = 9e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 93 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 153 ggcattttggtcggtgcaaccttccggcacgggca 187 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 261 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 320 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 321 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 380 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 381 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 440 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130 Query: 441 cgcgagttcaccagcctcttgccaatgttctc 472 | |||||||||||||||||||||||||||||| Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 489 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 548 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276 Query: 549 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 608 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 275 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 216 Query: 609 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 668 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 215 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 156 Query: 669 tccatacgaccatcacggat 688 |||||||| || |||||||| Sbjct: 155 tccatacgcccgtcacggat 136 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 259 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 318 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 319 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 378 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 379 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 438 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386 Query: 439 cccgcgagttcaccagcctcttgccaatgttctc 472 ||| |||||||||||||||||||||||||||||| Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 489 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 548 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070 Query: 549 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 608 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1069 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1010 Query: 609 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 668 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 1009 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 950 Query: 669 tccatacgaccatcacggat 688 |||||||| || |||||||| Sbjct: 949 tccatacgcccgtcacggat 930 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 259 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 318 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 319 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 378 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 379 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 438 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180 Query: 439 cccgcgagttcaccagcctcttgccaatgttctc 472 ||| |||||||||||||||||||||||||||||| Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146 Score = 119 bits (60), Expect = 1e-23 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 93 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 153 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 209 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444 Query: 210 acctcctcct 219 ||||||||| Sbjct: 1443 ccctcctcct 1434
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 489 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 548 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021 Query: 549 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 608 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1020 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 961 Query: 609 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 668 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 960 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 901 Query: 669 tccatacgaccatcacggat 688 |||||||| || |||||||| Sbjct: 900 tccatacgcccgtcacggat 881 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 93 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 153 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 209 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395 Query: 210 acctcctcct 219 ||||||||| Sbjct: 1394 ccctcctcct 1385 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 259 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 318 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 319 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 378 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 379 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 438 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131 Query: 439 cccgcgagttcaccagcctcttgccaatgttctc 472 ||| |||||||||||||||||||||||||||||| Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 489 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 548 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059 Query: 549 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 608 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1058 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 999 Query: 609 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 668 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 998 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 939 Query: 669 tccatacgaccatcacggat 688 |||||||| || |||||||| Sbjct: 938 tccatacgcccgtcacggat 919 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 93 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 153 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 209 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433 Query: 210 acctcctcct 219 ||||||||| Sbjct: 1432 ccctcctcct 1423 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 259 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 318 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 319 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 378 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 379 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 438 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169 Query: 439 cccgcgagttcaccagcctcttgccaatgttctc 472 ||| |||||||||||||||||||||||||||||| Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 489 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 548 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058 Query: 549 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 608 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1057 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 998 Query: 609 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 668 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 997 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 938 Query: 669 tccatacgaccatcacggat 688 |||||||| || |||||||| Sbjct: 937 tccatacgcccgtcacggat 918 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 93 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 153 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 209 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432 Query: 210 acctcctcct 219 ||||||||| Sbjct: 1431 ccctcctcct 1422 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 259 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 318 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 319 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 378 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 379 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 438 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168 Query: 439 cccgcgagttcaccagcctcttgccaatgttctc 472 ||| |||||||||||||||||||||||||||||| Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 489 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 548 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842 Query: 549 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 608 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 841 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 782 Query: 609 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 668 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 781 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 722 Query: 669 tccatacgaccatcacggat 688 |||||||| || |||||||| Sbjct: 721 tccatacgcccgtcacggat 702 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 93 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 153 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 209 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216 Query: 210 acctcctcct 219 ||||||||| Sbjct: 1215 ccctcctcct 1206 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 259 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 318 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 319 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 378 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 379 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 438 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952 Query: 439 cccgcgagttcaccagcctcttgccaatgttctc 472 ||| |||||||||||||||||||||||||||||| Sbjct: 951 ccctcgagttcaccagcctcttgccaatgttctc 918
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 489 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 548 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063 Query: 549 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 608 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1062 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1003 Query: 609 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 668 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 1002 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 943 Query: 669 tccatacgaccatcacggat 688 |||||||| || |||||||| Sbjct: 942 tccatacgcccgtcacggat 923 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 93 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 153 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 209 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437 Query: 210 acctcctcct 219 ||||||||| Sbjct: 1436 ccctcctcct 1427 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 259 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 318 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 319 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 378 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 379 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 438 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173 Query: 439 cccgcgagttcaccagcctcttgccaatgttctc 472 ||| |||||||||||||||||||||||||||||| Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 489 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 548 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057 Query: 549 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 608 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1056 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 997 Query: 609 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 668 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 996 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 937 Query: 669 tccatacgaccatcacggat 688 |||||||| || |||||||| Sbjct: 936 tccatacgcccgtcacggat 917 Score = 133 bits (67), Expect = 9e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 93 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 153 ggcattttggtcggtgcaaccttccggcacgggca 187 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 261 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 320 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 321 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 380 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 381 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 440 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165 Query: 441 cgcgagttcaccagcctcttgccaatgttctc 472 | |||||||||||||||||||||||||||||| Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 170 bits (86), Expect = 4e-39 Identities = 275/338 (81%) Strand = Plus / Minus Query: 336 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 395 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 396 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 455 ||||||| |||||||| ||||| ||||| ||| ||||| |||| ||||| || ||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123 Query: 456 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 515 | |||| |||||||||| ||| | ||||||||||||||||||||| ||||||||| Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063 Query: 516 acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatc 575 ||||| || ||||| || ||||| ||||| ||||| || || ||||||||||| || | | Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtccaccagc 1003 Query: 576 ttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagacaccgata 635 | || || | |||||| ||| |||||||| ||||||| |||||||| || ||||| Sbjct: 1002 ctcaccacggcctcgtcggggacgttgtcggtgcggaagatgcccttgcacacgccgatg 943 Query: 636 cggtcgtcacgggtgggagcccagtagaacttctccat 673 ||||| || |||||||| |||||||||||||||||||| Sbjct: 942 cggtcctcccgggtgggcgcccagtagaacttctccat 905
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 546 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 605 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 108688 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 108747 Query: 606 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 665 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 108748 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 108807 Query: 666 ttctccatacgaccatcacggat 688 ||||||||||| || |||||||| Sbjct: 108808 ttctccatacgcccgtcacggat 108830 Score = 133 bits (67), Expect = 9e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 93 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 153 ggcattttggtcggtgcaaccttccggcacgggca 187 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 256 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 315 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 316 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 375 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 376 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 435 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485 Query: 436 cgtcccgcgagttcaccagcctcttgccaatgttctc 472 | |||| |||||||||||||||||||||||||||||| Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 112456 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 112515 Query: 670 ccat 673 |||| Sbjct: 112516 ccat 112519 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 111 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 170 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 171 accttccggcacggg 185 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 489 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 538 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 444 gagttcaccagcctcttgccaatgttctc 472 ||||||||||||||| |||| |||||||| Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 546 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 605 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 30565 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 30624 Query: 606 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 665 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 30625 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 30684 Query: 666 ttctccatacgaccatcacggat 688 ||||||||||| || |||||||| Sbjct: 30685 ttctccatacgcccgtcacggat 30707 Score = 133 bits (67), Expect = 9e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 93 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 153 ggcattttggtcggtgcaaccttccggcacgggca 187 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 256 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 315 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 316 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 375 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 376 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 435 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362 Query: 436 cgtcccgcgagttcaccagcctcttgccaatgttctc 472 | |||| |||||||||||||||||||||||||||||| Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 34333 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 34392 Query: 670 ccat 673 |||| Sbjct: 34393 ccat 34396 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 111 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 170 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 171 accttccggcacggg 185 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 489 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 538 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 444 gagttcaccagcctcttgccaatgttctc 472 ||||||||||||||| |||| |||||||| Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 546 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 605 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 28303827 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28303886 Query: 606 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 665 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 28303887 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 28303946 Query: 666 ttctccatacgaccatcacggat 688 ||||||||||| || |||||||| Sbjct: 28303947 ttctccatacgcccgtcacggat 28303969 Score = 133 bits (67), Expect = 9e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 93 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 153 ggcattttggtcggtgcaaccttccggcacgggca 187 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 256 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 315 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 316 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 375 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 376 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 435 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624 Query: 436 cgtcccgcgagttcaccagcctcttgccaatgttctc 472 | |||| |||||||||||||||||||||||||||||| Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 28307595 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 28307654 Query: 670 ccat 673 |||| Sbjct: 28307655 ccat 28307658 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 111 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 170 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 171 accttccggcacggg 185 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 489 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 538 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 444 gagttcaccagcctcttgccaatgttctc 472 ||||||||||||||| |||| |||||||| Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 546 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 605 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 28286276 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28286335 Query: 606 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 665 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 28286336 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 28286395 Query: 666 ttctccatacgaccatcacggat 688 ||||||||||| || |||||||| Sbjct: 28286396 ttctccatacgcccgtcacggat 28286418 Score = 133 bits (67), Expect = 9e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 93 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 153 ggcattttggtcggtgcaaccttccggcacgggca 187 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 256 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 315 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 316 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 375 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 376 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 435 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073 Query: 436 cgtcccgcgagttcaccagcctcttgccaatgttctc 472 | |||| |||||||||||||||||||||||||||||| Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 28290044 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 28290103 Query: 670 ccat 673 |||| Sbjct: 28290104 ccat 28290107 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 111 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 170 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 171 accttccggcacggg 185 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 489 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 538 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 444 gagttcaccagcctcttgccaatgttctc 472 ||||||||||||||| |||| |||||||| Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 141 bits (71), Expect = 3e-30 Identities = 173/207 (83%) Strand = Plus / Minus Query: 485 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 544 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184 Query: 545 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 604 ||||| || || ||||||||||| || | | | || || | |||||| ||| ||||| Sbjct: 1183 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 1124 Query: 605 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 664 ||| ||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||| Sbjct: 1123 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagtagaa 1064 Query: 665 cttctccatacgaccatcacggatcag 691 ||||||||| || || ||||||||||| Sbjct: 1063 cttctccatgcgcccgtcacggatcag 1037 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 336 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 395 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 396 ttctcgactgtcatctttggctgctcgaa 424 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 131 bits (66), Expect = 3e-27 Identities = 135/158 (85%) Strand = Plus / Minus Query: 531 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgacgacagactcg 590 |||||||| || ||||| ||||| || |||||||||||||||| |||||| || || Sbjct: 1164 gcaccgaagaaatcaatagattggccagggaaggtgtcgacgagcttgacaacgtggtcc 1105 Query: 591 tcactgacattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtg 650 ||| |||||||||||| ||||||||| || |||||||||||||| ||||||||| Sbjct: 1104 tcaggaacattgtcggtcctgaagataccggtggcaacaccgatacggtcctcacgggtg 1045 Query: 651 ggagcccagtagaacttctccatacgaccatcacggat 688 |||||||||||||||||||||||||||||||||||||| Sbjct: 1044 ggagcccagtagaacttctccatacgaccatcacggat 1007
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1075 Query: 671 catacgaccatcacggatcagag 693 |||||| ||||||||||| |||| Sbjct: 1074 catacgtccatcacggatgagag 1052
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1075 Query: 671 catacgaccatcacggatcagag 693 |||||| ||||||||||| |||| Sbjct: 1074 catacgtccatcacggatgagag 1052
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1104 Query: 671 catacgaccatcacggatcagag 693 |||||| ||||||||||| |||| Sbjct: 1103 catacgtccatcacggatgagag 1081
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 986 Query: 671 catacgaccatcacggatcagag 693 |||||| ||||||||||| |||| Sbjct: 985 catacgtccatcacggatgagag 963
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 960 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 901 Query: 671 catacgaccatcacggatcagag 693 |||||| ||||||||||| |||| Sbjct: 900 catacgtccatcacggatgagag 878
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Plus Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 14154 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 14213 Query: 671 catacgaccatcacggatcagag 693 |||||| ||||||||||| |||| Sbjct: 14214 catacgtccatcacggatgagag 14236
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 989 Query: 671 catacgaccatcacggatcagag 693 |||||| ||||||||||| |||| Sbjct: 988 catacgtccatcacggatgagag 966
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1037 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 978 Query: 671 catacgaccatcacggatcagag 693 |||||| ||||||||||| |||| Sbjct: 977 catacgtccatcacggatgagag 955
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 986 Query: 671 catacgaccatcacggatcagag 693 |||||| ||||||||||| |||| Sbjct: 985 catacgtccatcacggatgagag 963
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 989 Query: 671 catacgaccatcacggatcagag 693 |||||| ||||||||||| |||| Sbjct: 988 catacgtccatcacggatgagag 966
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 125 bits (63), Expect = 2e-25 Identities = 171/207 (82%) Strand = Plus / Minus Query: 257 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 316 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 317 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 376 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 377 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 436 || |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828 Query: 437 gtcccgcgagttcaccagcctcttgcc 463 ||| |||||||||||||||||||||| Sbjct: 827 ctccagcgagttcaccagcctcttgcc 801 Score = 123 bits (62), Expect = 8e-25 Identities = 164/198 (82%) Strand = Plus / Minus Query: 491 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 550 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714 Query: 551 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 610 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 713 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 654 Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 653 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 594 Query: 671 catacgaccatcacggat 688 ||||||||| |||||||| Sbjct: 593 catacgaccgtcacggat 576 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 103 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 162 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 163 tcggtgcaaccttc 176 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1104 Query: 671 catacgaccatcacggatcagag 693 |||||| ||||||||||| |||| Sbjct: 1103 catacgtccatcacggatgagag 1081
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 3129 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 3070 Query: 671 catacgaccatcacggatcagag 693 |||||| ||||||||||| |||| Sbjct: 3069 catacgtccatcacggatgagag 3047
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 123 bits (62), Expect = 8e-25 Identities = 164/198 (82%) Strand = Plus / Minus Query: 491 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 550 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015 Query: 551 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 610 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 1014 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 955 Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 954 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 895 Query: 671 catacgaccatcacggat 688 ||||||||| |||||||| Sbjct: 894 catacgaccgtcacggat 877 Score = 103 bits (52), Expect = 8e-19 Identities = 166/204 (81%) Strand = Plus / Minus Query: 257 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 316 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249 Query: 317 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 376 ||||| ||| |||| || |||||||| | ||| || || ||||| ||||| || ||||| Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189 Query: 377 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 436 | |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129 Query: 437 gtcccgcgagttcaccagcctctt 460 ||| ||||||||||||||||||| Sbjct: 1128 ctccagcgagttcaccagcctctt 1105 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 103 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 162 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 163 tcggtgcaaccttc 176 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 123 bits (62), Expect = 8e-25 Identities = 164/198 (82%) Strand = Plus / Minus Query: 491 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 550 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878 Query: 551 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 610 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 877 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 818 Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 817 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 758 Query: 671 catacgaccatcacggat 688 ||||||||| |||||||| Sbjct: 757 catacgaccgtcacggat 740 Score = 97.6 bits (49), Expect = 5e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 264 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 323 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 324 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 383 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 384 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 443 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 444 gagttcaccagcctctt 460 ||||||||||||||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 103 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 162 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 163 tcggtgcaaccttc 176 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 123 bits (62), Expect = 8e-25 Identities = 164/198 (82%) Strand = Plus / Minus Query: 491 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 550 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908 Query: 551 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 610 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 907 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 848 Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 847 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 788 Query: 671 catacgaccatcacggat 688 ||||||||| |||||||| Sbjct: 787 catacgaccgtcacggat 770 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Minus Query: 264 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 323 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 324 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 383 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 384 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 443 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 444 gagttcaccagcctcttgcc 463 |||||||||||||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 103 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 162 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 163 tcggtgcaaccttc 176 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 99 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 158 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 159 ttggtcggtgcaaccttccggcacgggca 187 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 113 bits (57), Expect = 8e-22 Identities = 63/65 (96%) Strand = Plus / Minus Query: 624 cagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatca 683 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2813 cagacaccaatacggtcctcacgggtgggagcccagtagaacttctccatacgaccatca 2754 Query: 684 cggat 688 ||||| Sbjct: 2753 cggat 2749
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 113 bits (57), Expect = 8e-22 Identities = 63/65 (96%) Strand = Plus / Minus Query: 624 cagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatca 683 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1185 cagacaccaatacggtcctcacgggtgggagcccagtagaacttctccatacgaccatca 1126 Query: 684 cggat 688 ||||| Sbjct: 1125 cggat 1121 Score = 44.1 bits (22), Expect = 0.61 Identities = 58/70 (82%) Strand = Plus / Minus Query: 504 tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 563 ||||||||||| || ||||| | || || ||||||||||| || |||||||| |||||| Sbjct: 1305 tcatcgtcgtatacacgagccctcaacgctccgaaaaagtcgatagattgtccagggaag 1246 Query: 564 gtgtcgacga 573 | ||| |||| Sbjct: 1245 gcgtcaacga 1236
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 93 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 153 ggcattttggtcggtgcaaccttccggcacgggca 187 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF173678.1|AF173678 Beta vulgaris clone RAC109UNI ribulose bisphosphate carboxylase activase (Rca) gene, partial sequence Length = 648 Score = 99.6 bits (50), Expect = 1e-17 Identities = 86/98 (87%) Strand = Plus / Minus Query: 596 gacattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagc 655 ||||||||| ||| ||||||||| |||| ||||| |||||||| ||||| ||||| || Sbjct: 248 gacattgtcagtcctgaagataccagtgcaaacaccaatacggtcctcacgagtgggtgc 189 Query: 656 ccagtagaacttctccatacgaccatcacggatcagag 693 ||||||||| ||||||||||||||||||||||| |||| Sbjct: 188 ccagtagaatttctccatacgaccatcacggatgagag 151
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 97.6 bits (49), Expect = 5e-17 Identities = 85/97 (87%) Strand = Plus / Minus Query: 597 acattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 656 |||||||| ||| ||| ||||||||||||||||| |||||||| || | ||| |||||| Sbjct: 1043 acattgtcagtcctgaaaatacccttgcagacaccaatacggtcttccctggtaggagcc 984 Query: 657 cagtagaacttctccatacgaccatcacggatcagag 693 |||||||| || |||||||||||||||||||| |||| Sbjct: 983 cagtagaatttttccatacgaccatcacggataagag 947 Score = 44.1 bits (22), Expect = 0.61 Identities = 43/50 (86%) Strand = Plus / Minus Query: 285 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 334 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 97.6 bits (49), Expect = 5e-17 Identities = 142/173 (82%) Strand = Plus / Minus Query: 501 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 560 ||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| || || ||| Sbjct: 683 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaagtcgatggactggccaggg 624 Query: 561 aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 620 ||||||||||| | || |||||| ||| || ||| |||||| ||||||| ||| Sbjct: 623 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 564 Query: 621 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 673 |||||||| ||||| ||||| || |||||||| |||||||||||||||||||| Sbjct: 563 ttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttctccat 511 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 265 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 324 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 325 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 384 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 385 actctagcagcttctcgactgtcatctttggctgctcgaa 424 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 265 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 324 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 325 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 384 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 385 actctagcagcttctcgactgtcatctttggctgctcgaa 424 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155 Score = 89.7 bits (45), Expect = 1e-14 Identities = 141/173 (81%) Strand = Plus / Minus Query: 501 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 560 ||||| |||||||| ||||| |||||||| || ||||| || || ||||| || || ||| Sbjct: 1078 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaaatcgatggactggccaggg 1019 Query: 561 aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 620 ||||||||||| | || |||||| ||| || ||| |||||| ||||||| ||| Sbjct: 1018 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 959 Query: 621 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 673 |||||||| ||||| ||||| || |||||||| |||||||||||||||||||| Sbjct: 958 ttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttctccat 906
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 265 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 324 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 325 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 384 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 385 actctagcagcttctcgactgtcatctttggctgctcgaa 424 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155 Score = 79.8 bits (40), Expect = 1e-11 Identities = 58/64 (90%) Strand = Plus / Minus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| ||||||||||| ||||| ||||| || |||||||| |||||||||||||||| Sbjct: 969 ggaagatgcccttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttct 910 Query: 670 ccat 673 |||| Sbjct: 909 ccat 906
>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase (pTA1.1) Length = 1011 Score = 91.7 bits (46), Expect = 3e-15 Identities = 157/194 (80%) Strand = Plus / Minus Query: 500 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 559 ||||||||| ||||| || || || | ||||||||| || |||||||| |||||||| || Sbjct: 462 cacctcatcatcgtatactcgtgccctcagagcaccaaagaagtcaatagattgtccagg 403 Query: 560 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 619 |||||| ||||| ||||| || |||| || ||| || ||||||||| ||| ||||| Sbjct: 402 gaaggtatcgacaatctttacaacagcttcctcaggcacgttgtcggtcctgaaaatacc 343 Query: 620 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 679 |||||| ||||| || | || || | || || ||||| |||||||||||||||||||| Sbjct: 342 cttgcaaacaccaattctatcttccctagttggtgcccaatagaacttctccatacgacc 283 Query: 680 atcacggatcagag 693 ||||||||| |||| Sbjct: 282 atcacggataagag 269
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 87.7 bits (44), Expect = 5e-14 Identities = 65/72 (90%) Strand = Plus / Minus Query: 622 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccat 681 ||||||| || ||||| || || ||||||||||||||||||||||||||||||||||| | Sbjct: 1034 tgcagactccaatacgatcttcgcgggtgggagcccagtagaacttctccatacgaccgt 975 Query: 682 cacggatcagag 693 ||||||| |||| Sbjct: 974 cacggatgagag 963 Score = 56.0 bits (28), Expect = 2e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 293 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 352 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 353 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 412 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 413 tggctgctcgaa 424 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232 Score = 44.1 bits (22), Expect = 0.61 Identities = 64/78 (82%) Strand = Plus / Minus Query: 491 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 550 |||||| | ||| ||||||||||| |||| ||| | || ||||| || || ||||| || Sbjct: 1165 ccacttcctcacttcatcgtcgtaaaccctagccctcaaggcaccaaagaaatcaataga 1106 Query: 551 ttgtcctgggaaggtgtc 568 ||| |||||||||||||| Sbjct: 1105 ttggcctgggaaggtgtc 1088
>gb|DQ124098.1| Coffea arabica clone MN-SSH2-F02 mRNA sequence Length = 253 Score = 85.7 bits (43), Expect = 2e-13 Identities = 61/67 (91%) Strand = Plus / Minus Query: 622 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccat 681 |||||||||| ||||| ||||| ||||| || ||||||||||| |||||||||||||||| Sbjct: 143 tgcagacaccaatacgatcgtcgcgggttggtgcccagtagaatttctccatacgaccat 84 Query: 682 cacggat 688 ||||||| Sbjct: 83 cacggat 77
>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence Length = 619 Score = 85.7 bits (43), Expect = 2e-13 Identities = 136/167 (81%) Strand = Plus / Minus Query: 507 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 566 |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| | Sbjct: 618 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 559 Query: 567 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 626 ||||||| || |||||| |||||| ||| |||||| ||||||| |||||||| Sbjct: 558 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 499 Query: 627 acaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 673 || ||||| |||||||| |||||||| |||||||||||||| ||||| Sbjct: 498 acgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgtccat 452
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 81.8 bits (41), Expect = 3e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 621 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacca 680 ||||||||||| |||||||| || | |||||| ||||||||||| ||||||||||| ||| Sbjct: 1019 ttgcagacaccaatacggtcctccctggtgggtgcccagtagaatttctccatacggcca 960 Query: 681 tcacggatcagag 693 |||||||| |||| Sbjct: 959 tcacggataagag 947 Score = 40.1 bits (20), Expect = 9.5 Identities = 68/84 (80%) Strand = Plus / Minus Query: 294 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 353 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 354 ttgtcctgctcctggacgagcatg 377 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 79.8 bits (40), Expect = 1e-11 Identities = 64/72 (88%) Strand = Plus / Minus Query: 622 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccat 681 |||||||||| ||||| || || | || ||||||||||||||||||||||||||||||| Sbjct: 456 tgcagacaccaatacgatcttctctagtaggagcccagtagaacttctccatacgaccat 397 Query: 682 cacggatcagag 693 ||||||| |||| Sbjct: 396 cacggatgagag 385 Score = 48.1 bits (24), Expect = 0.039 Identities = 75/92 (81%) Strand = Plus / Minus Query: 489 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 548 |||||||| | ||| ||||| |||||||| | ||| | || |||||||| || || ||| Sbjct: 589 acccacttcctcacttcatcatcgtacactctagccctcaatgcaccgaagaaatcgatg 530 Query: 549 gattgtcctgggaaggtgtcgacgatcttgac 580 ||||| || ||||||||||| || |||||||| Sbjct: 529 gattggccagggaaggtgtcaacaatcttgac 498
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 1e-11 Identities = 97/116 (83%) Strand = Plus / Minus Query: 282 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 341 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 342 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 397 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 genomic sequence Length = 633 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 470 Query: 670 ccatacgaccatcacggat 688 |||| || || |||||||| Sbjct: 469 ccatgcgcccgtcacggat 451
>gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 670 ccatacgaccatcacggat 688 |||| || || |||||||| Sbjct: 471 ccatgcgcccgtcacggat 453
>gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 genomic sequence Length = 639 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 535 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 476 Query: 670 ccatacgaccatcacggat 688 |||| || || |||||||| Sbjct: 475 ccatgcgcccgtcacggat 457
>gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 670 ccatacgaccatcacggat 688 |||| || || |||||||| Sbjct: 471 ccatgcgcccgtcacggat 453
>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence Length = 627 Score = 77.8 bits (39), Expect = 4e-11 Identities = 135/167 (80%) Strand = Plus / Minus Query: 507 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 566 |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| | Sbjct: 626 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 567 Query: 567 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 626 ||||||| || |||||| |||||| ||| |||||| ||||||| |||||||| Sbjct: 566 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 507 Query: 627 acaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 673 || ||||| ||||| || |||||||| |||||||||||||| ||||| Sbjct: 506 acgccgatgcggtcctcccgggtgggcgcccagtagaacttgtccat 460
>gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 670 ccatacgaccatcacggat 688 |||| || || |||||||| Sbjct: 471 ccatgcgcccgtcacggat 453
>gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 670 ccatacgaccatcacggat 688 |||| || || |||||||| Sbjct: 471 ccatgcgcccgtcacggat 453
>gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 670 ccatacgaccatcacggat 688 |||| || || |||||||| Sbjct: 471 ccatgcgcccgtcacggat 453
>gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 genomic sequence Length = 637 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 533 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 474 Query: 670 ccatacgaccatcacggat 688 |||| || || |||||||| Sbjct: 473 ccatgcgcccgtcacggat 455
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 93 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 153 ggcattttggtcggtgcaaccttccggcacgggca 187 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 93 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 153 ggcattttggtcggtgcaaccttccggcacgggca 187 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 ||||||||| |||||||||| || ||||| || | |||||| ||||||||||| ||||| Sbjct: 872 gaagataccagtgcagacaccaattcggtcttctctggtgggcgcccagtagaatttctc 813 Query: 671 catacgaccatcacg 685 ||||||||||||||| Sbjct: 812 catacgaccatcacg 798
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 611 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 670 ||||||||| |||||||||| || ||||| || | |||||| ||||||||||| ||||| Sbjct: 1045 gaagataccagtgcagacaccaattcggtcttctctggtgggcgcccagtagaatttctc 986 Query: 671 catacgaccatcacg 685 ||||||||||||||| Sbjct: 985 catacgaccatcacg 971
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 77.8 bits (39), Expect = 4e-11 Identities = 78/91 (85%) Strand = Plus / Minus Query: 603 tcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtag 662 |||||| |||| || |||||||| ||||| || ||||| || | || || ||||||||| Sbjct: 1042 tcggtccggaaaattcccttgcaaacaccaatgcggtcttcccttgttggtgcccagtag 983 Query: 663 aacttctccatacgaccatcacggatcagag 693 |||||||||||||||||||||||||| |||| Sbjct: 982 aacttctccatacgaccatcacggatgagag 952
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 75.8 bits (38), Expect = 2e-10 Identities = 155/194 (79%) Strand = Plus / Minus Query: 500 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 559 ||||||||| ||||| || || || | ||||||||| || |||||||| |||||||| || Sbjct: 1106 cacctcatcatcgtatactcgtgccctcagagcaccaaagaagtcaatagattgtccagg 1047 Query: 560 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 619 |||||| ||||| ||||| | || | || ||| || ||||||||| ||| ||||| Sbjct: 1046 gaaggtatcgacaatctttataacggcttcctcaggcacgttgtcggtcctgaaaatacc 987 Query: 620 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 679 |||||| ||||| || | || || | || || ||||| |||||||||||||||||||| Sbjct: 986 cttgcaaacaccaattctatcttccctagttggtgcccaatagaacttctccatacgacc 927 Query: 680 atcacggatcagag 693 ||||||||| |||| Sbjct: 926 atcacggataagag 913
>gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 genomic sequence Length = 637 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 533 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 474 Query: 670 ccat 673 |||| Sbjct: 473 ccat 470
>gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 genomic sequence Length = 635 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 670 ccat 673 |||| Sbjct: 471 ccat 468
>gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 genomic sequence Length = 633 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 470 Query: 670 ccat 673 |||| Sbjct: 469 ccat 466
>gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 genomic sequence Length = 633 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 470 Query: 670 ccat 673 |||| Sbjct: 469 ccat 466
>gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 genomic sequence Length = 635 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 670 ccat 673 |||| Sbjct: 471 ccat 468
>gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genomic sequence Length = 639 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 610 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 535 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 476 Query: 670 ccat 673 |||| Sbjct: 475 ccat 472
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 71.9 bits (36), Expect = 3e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 602 gtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagta 661 ||||||| ||| ||||| ||||| ||||||||||||||||| | || || |||||||| Sbjct: 853 gtcggtcctgaaaatacctttgcaaacaccgatacggtcgtccctagttggtgcccagta 794 Query: 662 gaacttctccatacgaccatcacggatcagag 693 || |||||||||||||| |||||||| |||| Sbjct: 793 aaatttctccatacgaccgtcacggatgagag 762 Score = 48.1 bits (24), Expect = 0.039 Identities = 54/64 (84%) Strand = Plus / Minus Query: 510 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 569 ||||| |||||||| | || |||||||| || || |||||||| || |||||||||||| Sbjct: 945 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 886 Query: 570 acga 573 |||| Sbjct: 885 acga 882
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 71.9 bits (36), Expect = 3e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 654 gcccagtagaacttctccatacgaccatcacggatcagag 693 ||||||||||||||||||||||||||||||||||| |||| Sbjct: 963 gcccagtagaacttctccatacgaccatcacggataagag 924
>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase (pJQ11) Length = 883 Score = 69.9 bits (35), Expect = 1e-08 Identities = 35/35 (100%) Strand = Plus / Minus Query: 654 gcccagtagaacttctccatacgaccatcacggat 688 ||||||||||||||||||||||||||||||||||| Sbjct: 222 gcccagtagaacttctccatacgaccatcacggat 188 Score = 44.1 bits (22), Expect = 0.61 Identities = 43/50 (86%) Strand = Plus / Minus Query: 531 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 580 |||||||||||||| || |||||||| |||||| | || || |||||||| Sbjct: 345 gcaccgaaaaagtcgatagattgtccagggaagttatcaacaatcttgac 296
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 69.9 bits (35), Expect = 1e-08 Identities = 35/35 (100%) Strand = Plus / Minus Query: 654 gcccagtagaacttctccatacgaccatcacggat 688 ||||||||||||||||||||||||||||||||||| Sbjct: 982 gcccagtagaacttctccatacgaccatcacggat 948
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 527 cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 568 ||||||||||||||||||||||||||| || ||||||||||| Sbjct: 1113 cagagcaccgaaaaagtcaatggattggcccgggaaggtgtc 1072 Score = 63.9 bits (32), Expect = 7e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 597 acattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 656 |||||||||||| ||| ||||| |||| |||||||| | || || | |||||| ||| Sbjct: 1043 acattgtcggtcctgaaaatacctgtgcaaacaccgatcctatcttccctggtgggtgcc 984 Query: 657 cagtagaacttctccatacgaccatcacggat 688 ||||| ||||||||||||||||| |||||||| Sbjct: 983 cagtaaaacttctccatacgaccgtcacggat 952
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 65.9 bits (33), Expect = 2e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 608 ctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 667 ||||||||| ||| ||||||| ||||| ||||| ||||||||||| ||||||| |||| Sbjct: 1861 ctggaagattcccatgcagacgccgatgcggtcctcacgggtggggttccagtagtactt 1802 Query: 668 ctccatacgaccatcacggat 688 |||||| || || |||||||| Sbjct: 1801 ctccatgcggccgtcacggat 1781 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 336 agctgcacacgcttgacattgtcctgctc 364 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 63.9 bits (32), Expect = 7e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 602 gtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagta 661 ||||||| ||| ||||| ||||| ||||||| ||||||||| | || || |||||||| Sbjct: 852 gtcggtcctgaaaatacctttgcaaacaccgacacggtcgtccctagttggtgcccagta 793 Query: 662 gaacttctccatacgaccatcacggatcagag 693 || |||||||||||||| |||||||| |||| Sbjct: 792 aaatttctccatacgaccgtcacggatgagag 761 Score = 48.1 bits (24), Expect = 0.039 Identities = 54/64 (84%) Strand = Plus / Minus Query: 510 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 569 ||||| |||||||| | || |||||||| || || |||||||| || |||||||||||| Sbjct: 944 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 885 Query: 570 acga 573 |||| Sbjct: 884 acga 881
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 63.9 bits (32), Expect = 7e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 654 gcccagtagaacttctccatacgaccatcacggatcagag 693 ||||||||||| ||||||||||||||||||||||| |||| Sbjct: 999 gcccagtagaatttctccatacgaccatcacggataagag 960 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 527 cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 580 |||||||||||| || ||||| |||||||| |||||| | |||||||||||||| Sbjct: 1126 cagagcaccgaagaaatcaatagattgtccagggaagctatcgacgatcttgac 1073
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 507 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 566 ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 2664 Query: 567 tc 568 || Sbjct: 2663 tc 2662
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Minus Query: 651 ggagcccagtagaacttctccatacgaccatcacggat 688 ||||||||||||||||| |||||||||||||| ||||| Sbjct: 419 ggagcccagtagaacttttccatacgaccatcgcggat 382
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 507 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 566 ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 974 Query: 567 tc 568 || Sbjct: 973 tc 972
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 654 gcccagtagaacttctccatacgaccatcacg 685 ||||||||||||||||||||||| |||||||| Sbjct: 995 gcccagtagaacttctccatacgcccatcacg 964
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 656 ccagtagaacttctccatacgaccatcacggatca 690 ||||||||||||||||||||| |||||||| |||| Sbjct: 678 ccagtagaacttctccatacgcccatcacgaatca 644
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 490 cccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgg 549 ||||||| | ||| |||||||| || || ||||| | || |||||| || ||||| || | Sbjct: 1161 cccactttctcacttcatcgtcataaactcgagctctcaaagcaccaaagaagtctattg 1102 Query: 550 attgtcctgggaaggtgtcgac 571 | |||||||||||||||||||| Sbjct: 1101 actgtcctgggaaggtgtcgac 1080 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Minus Query: 633 atacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatcacg 685 ||||| || ||||| || |||||||||||||| || ||||| ||||||||||| Sbjct: 1018 atacgatcttcacgagttggagcccagtagaatttatccatccgaccatcacg 966
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/72 (86%), Gaps = 4/72 (5%) Strand = Plus / Minus Query: 624 cagacaccgatacggtcgtcacgggtgggagcccagt--agaacttctccatacgaccat 681 ||||||||||||||||| |||||||| | | ||||| |||||||||||||||| |||| Sbjct: 1016 cagacaccgatacggtcttcacgggtcg--ggccagtcaagaacttctccatacgtccat 959 Query: 682 cacggatcagag 693 || |||| |||| Sbjct: 958 caaggatgagag 947
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Plus Query: 639 tcgtcacgggtgggagcccagtagaacttctccatacgaccatcacg 685 |||||||| || || ||||||||||| || |||||||| |||||||| Sbjct: 6892 tcgtcacgagtaggtgcccagtagaatttttccatacgtccatcacg 6938
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 298 catcacccagagctgcctggct 319 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 558 gggaaggtgtcgacgatcttg 578 ||||||||||||||||||||| Sbjct: 3653 gggaaggtgtcgacgatcttg 3673
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 aaacatcagatattaaaagtg 89 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 atgcagcaagagatggtgggt 240 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 aaacatcagatattaaaagtg 89 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 aaacatcagatattaaaagtg 89 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>ref|NM_105969.1| Arabidopsis thaliana ATP binding / ATPase AT1G73110 mRNA, complete cds Length = 1437 Score = 40.1 bits (20), Expect = 9.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 656 ccagtagaacttctccatacgaccatcacggatcag 691 |||||||||||||||||| | || ||||||||||| Sbjct: 970 ccagtagaacttctccattcttccttcacggatcag 935
>gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complete sequence Length = 98713 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 608 ctggaagatacccttgcagacacc 631 ||||| |||||||||||||||||| Sbjct: 67288 ctggatgatacccttgcagacacc 67265
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence Length = 177245 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atatttagagatatattaac 20 |||||||||||||||||||| Sbjct: 12316 atatttagagatatattaac 12335
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 cctttacctcctcctatgca 224 |||||||||||||||||||| Sbjct: 46359 cctttacctcctcctatgca 46378
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 catcacccagagctgcctggctca 321 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 cctttacctcctcctatgca 224 |||||||||||||||||||| Sbjct: 1637 cctttacctcctcctatgca 1656
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 cctttacctcctcctatgca 224 |||||||||||||||||||| Sbjct: 32945 cctttacctcctcctatgca 32964
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 gtcagcaagctgcacacgct 348 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding protein, RAB7B Length = 1010 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 576 ttgacgacagactcgtcact 595 |||||||||||||||||||| Sbjct: 289 ttgacgacagactcgtcact 308
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tcagatattaaaagtggcat 93 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 tcagatattaaaagtggcat 93 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tcagatattaaaagtggcat 93 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 40.1 bits (20), Expect = 9.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 654 gcccagtagaacttctccatacgaccatcacg 685 ||||| ||||| |||||||||||||| ||||| Sbjct: 103825 gcccaatagaatttctccatacgaccgtcacg 103856
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 40.1 bits (20), Expect = 9.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 654 gcccagtagaacttctccatacgaccatcacg 685 ||||| ||||| |||||||||||||| ||||| Sbjct: 82850 gcccaatagaatttctccatacgaccgtcacg 82881
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 catcacccagagctgcctggctca 321 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 ttgacattgtcctgctcctg 367 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence Length = 98660 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atatttagagatatattaac 20 |||||||||||||||||||| Sbjct: 66386 atatttagagatatattaac 66367
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 catcacccagagctgcctggctca 321 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 102 ggtgtaaaggcagctgccgtcgtcgctc 129 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 aaacatgcccagcaatcgcttgga 45 |||||||||||||||||| ||||| Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
>gb|AY078044.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, complete cds Length = 1299 Score = 40.1 bits (20), Expect = 9.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 656 ccagtagaacttctccatacgaccatcacggatcag 691 |||||||||||||||||| | || ||||||||||| Sbjct: 936 ccagtagaacttctccattcttccttcacggatcag 901
>gb|AF361834.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, complete cds Length = 1437 Score = 40.1 bits (20), Expect = 9.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 656 ccagtagaacttctccatacgaccatcacggatcag 691 |||||||||||||||||| | || ||||||||||| Sbjct: 970 ccagtagaacttctccattcttccttcacggatcag 935
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 cctttacctcctcctatgca 224 |||||||||||||||||||| Sbjct: 34662 cctttacctcctcctatgca 34681
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 catcacccagagctgcctggctca 321 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 catcacccagagctgcctggctca 321 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 catcacccagagctgcctggctca 321 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 tggcatgcttaaaaggtgta 107 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 627 acaccgatacggtcgtcacg 646 |||||||||||||||||||| Sbjct: 3056308 acaccgatacggtcgtcacg 3056327
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ttgacattgtcctgctcctg 367 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>emb|BX813694.1|CNS0ADV2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB33ZF10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1426 Score = 40.1 bits (20), Expect = 9.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 656 ccagtagaacttctccatacgaccatcacggatcag 691 |||||||||||||||||| | || ||||||||||| Sbjct: 998 ccagtagaacttctccattcttccttcacggatcag 963
>emb|BX818441.1|CNS0ACQX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL79ZC02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 593 Score = 40.1 bits (20), Expect = 9.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 656 ccagtagaacttctccatacgaccatcacggatcag 691 |||||||||||||||||| | || ||||||||||| Sbjct: 208 ccagtagaacttctccattcttccttcacggatcag 173
>emb|BX815704.1|CNS0AARM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS85ZG11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1496 Score = 40.1 bits (20), Expect = 9.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 656 ccagtagaacttctccatacgaccatcacggatcag 691 |||||||||||||||||| | || ||||||||||| Sbjct: 944 ccagtagaacttctccattcttccttcacggatcag 909
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 298 catcacccagagctgcctggctca 321 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 cttgctgtgctcctttacctcctc 217 ||||||| |||||||||||||||| Sbjct: 648 cttgctgggctcctttacctcctc 625
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 cctttacctcctcctatgca 224 |||||||||||||||||||| Sbjct: 27755 cctttacctcctcctatgca 27736
>dbj|AK118942.1| Arabidopsis thaliana At1g73110 mRNA for unknown protein, complete cds, clone: RAFL21-28-D21 Length = 1447 Score = 40.1 bits (20), Expect = 9.5 Identities = 32/36 (88%) Strand = Plus / Minus Query: 656 ccagtagaacttctccatacgaccatcacggatcag 691 |||||||||||||||||| | || ||||||||||| Sbjct: 957 ccagtagaacttctccattcttccttcacggatcag 922
>gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete sequence Length = 116944 Score = 40.1 bits (20), Expect = 9.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 656 ccagtagaacttctccatacgaccatcacggatcag 691 |||||||||||||||||| | || ||||||||||| Sbjct: 97615 ccagtagaacttctccattcttccttcacggatcag 97650
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 atcagatattaaaagtggcatgct 96 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence Length = 105452 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atatttagagatatattaac 20 |||||||||||||||||||| Sbjct: 6216 atatttagagatatattaac 6197 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,619,391 Number of Sequences: 3902068 Number of extensions: 4619391 Number of successful extensions: 85990 Number of sequences better than 10.0: 139 Number of HSP's better than 10.0 without gapping: 139 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85470 Number of HSP's gapped (non-prelim): 453 length of query: 693 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 670 effective length of database: 17,143,297,704 effective search space: 11486009461680 effective search space used: 11486009461680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
