>T2EA_SCHPO (Q9P3W1) Transcription initiation factor IIE alpha subunit|
           (TFIIE-alpha)
          Length = 448

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -2

Query: 483 SKVTDYDSSKEKENDGESEADLESNKGDSALDSNGLQSAKANNGI 349
           +K TDY S K K  +  S++D+++ +  S  ++N L    + NGI
Sbjct: 369 NKSTDYGSVKRKTENLNSDSDIQNKRTKSIEENNSLPPIVSTNGI 413

>CLFA_STAAR (Q6GIK4) Clumping factor A precursor (Fibrinogen-binding protein A)|
            (Fibrinogen receptor A)
          Length = 1029

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 489  ENSKVTDYDSSKEKENDGESEADLES-NKGDSALDSNGLQSAKANNGIASP 340
            +++  +D DS    ++D +S +D  S N  DS  DSN    + +NN +  P
Sbjct: 920  DSASDSDSDSDSASDSDSDSTSDTGSDNDSDSESDSNSDSDSGSNNNVVPP 970

>YDG8_SCHPO (Q10495) Hypothetical protein C26F1.08c in chromosome I|
          Length = 977

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 47  MNHHHS-TYTNARKQTHGCKYSRPALLYSLKHPTLAL 154
           MN HH  T+   RK  H  KYS  A+ YSL  P +AL
Sbjct: 1   MNFHHGWTFHKLRKNEHFLKYS--AIFYSLLKPVVAL 35

>YAMP_RHOCA (P14172) Hypothetical 28.2 kDa protein in ampR 5'region|
          Length = 260

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +3

Query: 360 SPLRTAARCCRERSLPCWTLDRPPTHRR------SPSPWTNRSL*PCCSPTSWRPPQL 515
           SPL  + R  R+ SL      RPP+ +R       PSP +  S  P  +  SWRP ++
Sbjct: 192 SPL-PSCRVSRQGSLSACPWPRPPSPKRLSRRSPKPSPGSRNSSAPASASRSWRPARV 248

>CLFA_STAAW (Q8NXJ1) Clumping factor A precursor (Fibrinogen-binding protein A)|
           (Fibrinogen receptor A)
          Length = 946

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 474 TDYDSSKEKENDGESEADLESNK-GDSALDSNGLQSAKANNGIASP 340
           +D DS  +  +D +S +D +S+   DS  DSN    + +NN +  P
Sbjct: 842 SDSDSDSDSASDSDSGSDSDSSSDSDSESDSNSDSESGSNNNVVPP 887

>CLFA_STAAU (Q53653) Clumping factor A precursor (Fibrinogen-binding protein A)|
           (Fibrinogen receptor A)
          Length = 933

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 474 TDYDSSKEKENDGESEADLESNK-GDSALDSNGLQSAKANNGIASP 340
           +D DS  +  +D +S +D +S+   DS  DSN    + +NN +  P
Sbjct: 829 SDSDSDSDSASDSDSGSDSDSSSDSDSESDSNSDSESGSNNNVVPP 874

>CLFA_STAAC (Q5HHM8) Clumping factor A precursor (Fibrinogen-binding protein A)|
           (Fibrinogen receptor A)
          Length = 933

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 474 TDYDSSKEKENDGESEADLESNK-GDSALDSNGLQSAKANNGIASP 340
           +D DS  +  +D +S +D +S+   DS  DSN    + +NN +  P
Sbjct: 829 SDSDSDSDSASDSDSGSDSDSSSDSDSESDSNSDSESGSNNNVVPP 874

>CLFA_STAAS (Q6GB45) Clumping factor A precursor (Fibrinogen-binding protein A)|
           (Fibrinogen receptor A)
          Length = 928

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 474 TDYDSSKEKENDGESEADLESNK-GDSALDSNGLQSAKANNGIASP 340
           +D DS  +  +D +S +D +S+   DS  DSN    + +NN +  P
Sbjct: 824 SDSDSDSDSASDSDSGSDSDSSSDSDSESDSNSDSESGSNNNVVPP 869


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,082,355
Number of Sequences: 219361
Number of extensions: 1154112
Number of successful extensions: 3699
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3696
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)