>TL26_ARATH (P82538) Thylakoid lumenal 25.6 kDa protein, chloroplast precursor|
          Length = 230

 Score =  117 bits (293), Expect = 2e-26
 Identities = 55/137 (40%), Positives = 81/137 (59%)
 Frame = -1

Query: 589 YLYPADWRDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAIFNLVNEVYA 410
           +LYP  W++    G D  +KD    L+SV V  +PT K  I++ GP  +    L+ +V A
Sbjct: 93  FLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLA 152

Query: 409 APNQIPTIYEMQERTVDGRNYWTFEYDLEAPGYGVSAFATIAIGNGRYYTLIVTANERRW 230
            PNQ  T+ +  E  VDG+ Y+ FE+ ++A  Y   A  TI + NG +YTL   ANERRW
Sbjct: 153 PPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRW 212

Query: 229 SRLRNKLKVVADSFKIS 179
            +++++L  V DSFKI+
Sbjct: 213 EKMKDRLHTVVDSFKIT 229

>TL30_ARATH (O49292) Thylakoid lumenal 29.8 kDa protein, chloroplast precursor|
          Length = 274

 Score = 36.6 bits (83), Expect = 0.055
 Identities = 26/60 (43%), Positives = 32/60 (53%)
 Frame = -1

Query: 361 DGRNYWTFEYDLEAPGYGVSAFATIAIGNGRYYTLIVTANERRWSRLRNKLKVVADSFKI 182
           DGR Y+ FE  LE P   ++A A    GN R Y   VT N  +W R    LK +A SF+I
Sbjct: 220 DGRLYYQFE--LEPPHVLITATAA---GN-RLYLFSVTGNGLQWKRHYKDLKRIASSFRI 273

>PSBP_NARPS (Q40407) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 265

 Score = 35.8 bits (81), Expect = 0.094
 Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 22/155 (14%)
 Frame = -1

Query: 586 LYPADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAIFNL---- 428
           L P+ W   ++ +F G    ++D      +V V   PT K  I+D G  ++ +  +    
Sbjct: 108 LIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFLSQVDYLL 167

Query: 427 ---------VNEVYAAPNQIPT--IYEMQERTVDGRNYWTFEY---DLEAPGYGVSAFAT 290
                    ++E    PN + T  I E     V G++Y++        +    G     T
Sbjct: 168 GKQAYFGKTISEGGFEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGDEGGKHLLIT 227

Query: 289 IAIGNGRYYTLIVTANERRWSRLRNK-LKVVADSF 188
             + +G+ Y     A ++RW +   K ++  A SF
Sbjct: 228 ATVSDGKLYICKAQAGDKRWFKGAKKFVESAASSF 262

>TL19_ARATH (P82658) Thylakoid lumenal 19 kDa protein, chloroplast precursor|
           (P19)
          Length = 229

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
 Frame = -1

Query: 550 GHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAIFNL------VNEVYAAPNQIPT 389
           G DS F +   + +   + F+       R L P D  + NL      + ++ A  +++ +
Sbjct: 108 GTDSEFYNPKKKTEKEYLTFL----AGFRQLAPRDVILNNLALSDVELQDLIAGADKVVS 163

Query: 388 IYEMQERTVDGRNYWTFEYDLEAPGYGVSAFATIAIGNGRYYTLIVTANERRWSRLRNKL 209
             E ++ T  G+ Y+ +E D    G G  +  T+     R Y   V A    W+R  + L
Sbjct: 164 -EERKDET--GQVYYLYEID----GVGKHSLITVTCSKNRLYAHFVNAPAPEWNRDHDTL 216

Query: 208 KVVADSFK 185
             + DSFK
Sbjct: 217 THLRDSFK 224

>PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein) (OEC23)
          Length = 263

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 33/156 (21%), Positives = 63/156 (40%), Gaps = 22/156 (14%)
 Frame = -1

Query: 580 PADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAI----FNLVN 422
           P+ W   ++ +F G    ++D      ++ V   PT K  I+D G  +E +    + L  
Sbjct: 108 PSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGK 167

Query: 421 EVYAA---------PNQIPT--IYEMQERTVDGRNYW---TFEYDLEAPGYGVSAFATIA 284
           + Y           P+ + T  I E     V+G++Y+         +    G     T  
Sbjct: 168 QAYFGKTASEGGFDPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQLITAT 227

Query: 283 IGNGRYYTLIVTANERRWSR-LRNKLKVVADSFKIS 179
           + +G+ Y     A ++RW +  R  ++  A SF ++
Sbjct: 228 VNDGKLYICKAQAGDKRWFKGARKFVEGAASSFSVA 263

>PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane)
          Length = 266

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 22/156 (14%)
 Frame = -1

Query: 580 PADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAI----FNLVN 422
           P+ W   ++ ++ G    F+D      +V VA  PT K  I D G  ++ +    + L  
Sbjct: 111 PSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGR 170

Query: 421 EVYAAPNQ-----------IPTIYEMQERTVDGRNYWTFEY---DLEAPGYGVSAFATIA 284
           + Y+               I  + E     V G+ Y+         +    G     T  
Sbjct: 171 QAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTAT 230

Query: 283 IGNGRYYTLIVTANERRWSRLRNK-LKVVADSFKIS 179
           + +G+ Y     A ++RW +   K ++  A SF ++
Sbjct: 231 VNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 266

>PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane protein)
          Length = 263

 Score = 33.1 bits (74), Expect = 0.61
 Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 22/156 (14%)
 Frame = -1

Query: 580 PADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAI----FNLVN 422
           PA W   ++ ++ G    F+D      ++ V   PT K  I D G  +E +    + L  
Sbjct: 108 PAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGK 167

Query: 421 EVYAAP---------NQIPT--IYEMQERTVDGRNYW---TFEYDLEAPGYGVSAFATIA 284
           + Y            N + T  I E   + V G+ Y+         +    G     T  
Sbjct: 168 QAYFGETASEGGFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITAT 227

Query: 283 IGNGRYYTLIVTANERRWSR-LRNKLKVVADSFKIS 179
           +  G+ Y     A ++RW +  R  ++  A SF ++
Sbjct: 228 VNGGKLYICKAQAGDKRWFKGARKFVESAATSFSVA 263

>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane)
          Length = 265

 Score = 32.7 bits (73), Expect = 0.80
 Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 22/156 (14%)
 Frame = -1

Query: 580 PADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAI----FNLVN 422
           P+ W   ++ ++ G    F+D      +V VA  PT K  I D G  ++ +    + L  
Sbjct: 110 PSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGR 169

Query: 421 EVYAAPNQ-----------IPTIYEMQERTVDGRNYW---TFEYDLEAPGYGVSAFATIA 284
           + Y+               I  + E     V G+ Y+         +    G     T  
Sbjct: 170 QAYSGKTDSEGGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGKHQLITAT 229

Query: 283 IGNGRYYTLIVTANERRWSRLRNK-LKVVADSFKIS 179
           + +G+ Y     A ++RW +   K ++  A SF ++
Sbjct: 230 VNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 265

>YTBQ_BACSU (P53560) Hypothetical protein ytbQ|
          Length = 253

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = -1

Query: 418 VYAAPNQIPTIYEMQERTVDGRNYWTFEYDLEAPGYGVSAFATIAIGNGRYYTLIVTANE 239
           V+A+ N +  +YE   R++ GR   T +Y L    YGV    +  IG+  Y         
Sbjct: 108 VFASSNHVTDVYEKDGRSLLGREITTSDYPLSKNLYGVLKLTSEQIGHLFY--------- 158

Query: 238 RRWSRLRNKLKVV 200
                L NKL V+
Sbjct: 159 -----LENKLSVI 166

>PSBP2_ARATH (O49344) Oxygen-evolving enhancer protein 2-2, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane protein)
          Length = 265

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 22/156 (14%)
 Frame = -1

Query: 580 PADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAI----FNLVN 422
           P+ W   ++ ++ G    F+D      +V V   PT K  I D G  ++ +    + L  
Sbjct: 110 PSKWNPSKEIEYPGQVLRFEDNFDATSNVSVMITPTDKKSITDYGSPEQFLSQVNYLLGK 169

Query: 421 EVYAA---------PNQIPT--IYEMQERTVDGRNYW---TFEYDLEAPGYGVSAFATIA 284
           + Y            N + T  I E   + + G+ Y+         +    G     T  
Sbjct: 170 QAYVGETASEGGFDANAVATANILETSTQEIGGKEYYYLSVLTRTADGDEGGKHQLITAT 229

Query: 283 IGNGRYYTLIVTANERRWSR-LRNKLKVVADSFKIS 179
           +  G+ Y     A ++RW +  R  ++  A SF ++
Sbjct: 230 VNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 265

>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)|
          Length = 452

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = -1

Query: 535 FKDRNVQLQSVRVAFI-PTQKTDIRDLGPMDEAI 437
           FK+R +++Q  RVA I P  KTD + LG ++EAI
Sbjct: 228 FKERPLKIQHSRVAIIKPQAKTDEQALGEIEEAI 261

>TTF2_MOUSE (Q5NC05) Transcription termination factor 2 (EC 3.6.1.-) (RNA|
           polymerase II termination factor) (Transcription release
           factor 2)
          Length = 1184

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 107 HQSFARLANGAGGQEEVAQSGVQVGDLEGVGDDFELVAQ-PAPPPLVSG 250
           H S   L NG     +VAQ G+  G L+G    +  V + PA P L SG
Sbjct: 274 HVSREPLKNGEAPSAQVAQKGLAQGPLQGPSKTWRPVPEAPAAPGLCSG 322

>DXR_CHLCV (Q823G9) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 379

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 51  IQRAI*IETMVPSSWTGRDTKVSRALQMEPADRKRLPNQAFKSEILKESATT 206
           IQ A+      P+   G D  V + L+  P D +R P+     ++L+E  ++
Sbjct: 267 IQHALTAPKRYPAPHKGIDFSVKQTLEFFPVDEERFPSIGLARQVLREKGSS 318

>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor|
          Length = 1783

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = +2

Query: 77  YGSFLLDRP*HQSFARLANGAGGQEEVAQSGVQVG-----DLEGVGDDFELVAQPAPPPL 241
           Y + LL R  ++ F  +    G  E   + G  VG     D  GVGD  + + Q A P  
Sbjct: 21  YRARLLSRCLNKCFNTVLVSGGAAESRFRGGATVGKAGAHDARGVGDLVDFLQQEATPYE 80

Query: 242 VSGHDQRVVPPIPDGD 289
           V+     ++PP+   +
Sbjct: 81  VNVPPYLILPPLKSNE 96


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,703,667
Number of Sequences: 219361
Number of extensions: 1701033
Number of successful extensions: 4793
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4786
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)