>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  113 bits (57), Expect = 7e-22
 Identities = 108/125 (86%)
 Strand = Plus / Minus

                                                                           
Query: 442     cctcatccatcggacctaggtcacgaatgtctgttttctgagtaggaatgaaggccacac 501
               |||||||||| ||||| |||||||| || ||||||||   ||||||||||||| ||||||
Sbjct: 9528414 cctcatccattggaccaaggtcacggatatctgtttttgtagtaggaatgaagcccacac 9528355

                                                                           
Query: 502     ggacagactgcagctgcacattacggtccttgaacgctgaatcatgccccaagaagtcga 561
               | ||  ||||||||   |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 9528354 gcacgcactgcagcgctacattacgatctttgaacgctgaatcatgccccaggaagtcga 9528295

                    
Query: 562     aatcc 566
               |||||
Sbjct: 9528294 aatcc 9528290



 Score =  109 bits (55), Expect = 1e-20
 Identities = 85/95 (89%)
 Strand = Plus / Minus

                                                                           
Query: 176     gtcggagatcttgaaggagtcggcgacgactttgagcttgttgcgcagcctgctccaccg 235
               |||||| | |||||||||||||||||||||||||||| |||| | |||||| ||||| ||
Sbjct: 9529150 gtcggacagcttgaaggagtcggcgacgactttgagcctgttcctcagcctactccatcg 9529091

                                                  
Query: 236     ccgctcgttagcggtcacgatcagcgtgtagtacc 270
               ||||||||| || ||||||||||| ||||||||||
Sbjct: 9529090 ccgctcgttcgccgtcacgatcagtgtgtagtacc 9529056



 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                           
Query: 290     cgtcgcaaacgccgacacgccgtagcccggcgcctccagatcgtactcaaacgtccagta 349
               ||||||||| || ||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 9528883 cgtcgcaaatgcggacacgccgtagcccggggcctcaagatcgtactcaaatgtccagta 9528824

                                      
Query: 350     gttcctgccatccaccgtgcgct 372
               |||| |||||||||| |||||||
Sbjct: 9528823 gttcttgccatccacggtgcgct 9528801

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  113 bits (57), Expect = 7e-22
 Identities = 108/125 (86%)
 Strand = Plus / Minus

                                                                           
Query: 442     cctcatccatcggacctaggtcacgaatgtctgttttctgagtaggaatgaaggccacac 501
               |||||||||| ||||| |||||||| || ||||||||   ||||||||||||| ||||||
Sbjct: 9526535 cctcatccattggaccaaggtcacggatatctgtttttgtagtaggaatgaagcccacac 9526476

                                                                           
Query: 502     ggacagactgcagctgcacattacggtccttgaacgctgaatcatgccccaagaagtcga 561
               | ||  ||||||||   |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 9526475 gcacgcactgcagcgctacattacgatctttgaacgctgaatcatgccccaggaagtcga 9526416

                    
Query: 562     aatcc 566
               |||||
Sbjct: 9526415 aatcc 9526411



 Score =  109 bits (55), Expect = 1e-20
 Identities = 85/95 (89%)
 Strand = Plus / Minus

                                                                           
Query: 176     gtcggagatcttgaaggagtcggcgacgactttgagcttgttgcgcagcctgctccaccg 235
               |||||| | |||||||||||||||||||||||||||| |||| | |||||| ||||| ||
Sbjct: 9527271 gtcggacagcttgaaggagtcggcgacgactttgagcctgttcctcagcctactccatcg 9527212

                                                  
Query: 236     ccgctcgttagcggtcacgatcagcgtgtagtacc 270
               ||||||||| || ||||||||||| ||||||||||
Sbjct: 9527211 ccgctcgttcgccgtcacgatcagtgtgtagtacc 9527177



 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Minus

                                                                           
Query: 290     cgtcgcaaacgccgacacgccgtagcccggcgcctccagatcgtactcaaacgtccagta 349
               ||||||||| || ||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 9527004 cgtcgcaaatgcggacacgccgtagcccggggcctcaagatcgtactcaaatgtccagta 9526945

                                      
Query: 350     gttcctgccatccaccgtgcgct 372
               |||| |||||||||| |||||||
Sbjct: 9526944 gttcttgccatccacggtgcgct 9526922

>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0009C19, from chromosome 3, complete sequence
          Length = 131709

 Score =  113 bits (57), Expect = 7e-22
 Identities = 108/125 (86%)
 Strand = Plus / Plus

                                                                         
Query: 442   cctcatccatcggacctaggtcacgaatgtctgttttctgagtaggaatgaaggccacac 501
             |||||||||| ||||| |||||||| || ||||||||   ||||||||||||| ||||||
Sbjct: 84272 cctcatccattggaccaaggtcacggatatctgtttttgtagtaggaatgaagcccacac 84331

                                                                         
Query: 502   ggacagactgcagctgcacattacggtccttgaacgctgaatcatgccccaagaagtcga 561
             | ||  ||||||||   |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 84332 gcacgcactgcagcgctacattacgatctttgaacgctgaatcatgccccaggaagtcga 84391

                  
Query: 562   aatcc 566
             |||||
Sbjct: 84392 aatcc 84396



 Score =  109 bits (55), Expect = 1e-20
 Identities = 76/83 (91%)
 Strand = Plus / Plus

                                                                         
Query: 290   cgtcgcaaacgccgacacgccgtagcccggcgcctccagatcgtactcaaacgtccagta 349
             ||||||||| || ||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 83803 cgtcgcaaatgcggacacgccgtagcccggggcctcaagatcgtactcaaatgtccagta 83862

                                    
Query: 350   gttcctgccatccaccgtgcgct 372
             |||| |||||||||| |||||||
Sbjct: 83863 gttcttgccatccacggtgcgct 83885



 Score =  109 bits (55), Expect = 1e-20
 Identities = 85/95 (89%)
 Strand = Plus / Plus

                                                                         
Query: 176   gtcggagatcttgaaggagtcggcgacgactttgagcttgttgcgcagcctgctccaccg 235
             |||||| | |||||||||||||||||||||||||||| |||| | |||||| ||||| ||
Sbjct: 83536 gtcggacagcttgaaggagtcggcgacgactttgagcctgttcctcagcctactccatcg 83595

                                                
Query: 236   ccgctcgttagcggtcacgatcagcgtgtagtacc 270
             ||||||||| || ||||||||||| ||||||||||
Sbjct: 83596 ccgctcgttcgccgtcacgatcagtgtgtagtacc 83630

>gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, complete sequence
          Length = 150750

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 218   gcgcagcctgctccaccgccgc 239
             ||||||||||||||||||||||
Sbjct: 23378 gcgcagcctgctccaccgccgc 23399

>emb|CR617952.1| full-length cDNA clone CS0DJ008YF10 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 1537

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 218 gcgcagcctgctccaccgccgc 239
           ||||||||||||||||||||||
Sbjct: 6   gcgcagcctgctccaccgccgc 27

>gb|AC090152.4| Homo sapiens chromosome 8, clone RP11-554M1, complete sequence
          Length = 118755

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 218  gcgcagcctgctccaccgccgc 239
            ||||||||||||||||||||||
Sbjct: 2124 gcgcagcctgctccaccgccgc 2103

>emb|AJ315949.1|HSA315949 Homo sapiens DL8Q12 gene for hypothetical protein, exons 1-2
          Length = 2935

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 218 gcgcagcctgctccaccgccgc 239
           ||||||||||||||||||||||
Sbjct: 155 gcgcagcctgctccaccgccgc 176

>emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo sapiens (human)
          Length = 204955

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 218    gcgcagcctgctccaccgccgc 239
              ||||||||||||||||||||||
Sbjct: 128846 gcgcagcctgctccaccgccgc 128825

>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 83      tccttcctcttggacaggccg 103
               |||||||||||||||||||||
Sbjct: 3354915 tccttcctcttggacaggccg 3354895

>ref|XM_345253.2| PREDICTED: Rattus norvegicus similar to CGI-143 protein (predicted)
           (LOC365875), mRNA
          Length = 746

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 212 cttgttgcgcagcctgctccaccgc 236
           |||||||||||||||||| ||||||
Sbjct: 52  cttgttgcgcagcctgctgcaccgc 28

>gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome
          Length = 1469720

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 392    cggtatctggttcggggcag 411
              ||||||||||||||||||||
Sbjct: 202993 cggtatctggttcggggcag 203012

>ref|NM_124140.1| Arabidopsis thaliana transcription factor AT5G47660 mRNA, complete
           cds
          Length = 1197

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 192 gagtcggcgacgactttgag 211
           ||||||||||||||||||||
Sbjct: 32  gagtcggcgacgactttgag 51

>gb|AC092234.1|AC092234 Drosophila melanogaster, chromosome 2L, region 29C-29D, BAC clone
              BACR02I15, complete sequence
          Length = 186490

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     ctatttgaattgaaactatg 80
              ||||||||||||||||||||
Sbjct: 164835 ctatttgaattgaaactatg 164854

>gb|AC008330.3|AC008330 Drosophila melanogaster, chromosome 2L, region 29D-29E, BAC clone
             BACR23B08, complete sequence
          Length = 161927

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    ctatttgaattgaaactatg 80
             ||||||||||||||||||||
Sbjct: 77583 ctatttgaattgaaactatg 77602

>gb|DQ108785.1| Arabidopsis thaliana clone 24170 mRNA sequence
          Length = 787

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 192 gagtcggcgacgactttgag 211
           ||||||||||||||||||||
Sbjct: 400 gagtcggcgacgactttgag 381

>dbj|AB025628.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ7
          Length = 80117

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   gagtcggcgacgactttgag 211
             ||||||||||||||||||||
Sbjct: 72982 gagtcggcgacgactttgag 73001

>gb|AE003621.3| Drosophila melanogaster chromosome 2L, section 30 of 83 of the complete
              sequence
          Length = 308031

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     ctatttgaattgaaactatg 80
              ||||||||||||||||||||
Sbjct: 180997 ctatttgaattgaaactatg 181016


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,803,895
Number of Sequences: 3902068
Number of extensions: 3803895
Number of successful extensions: 58847
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58729
Number of HSP's gapped (non-prelim): 118
length of query: 589
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 566
effective length of database: 17,143,297,704
effective search space: 9703106500464
effective search space used: 9703106500464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)