ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13d21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA polymerase subunit (rpo) genes Length = 21245 Score = 1271 bits (641), Expect = 0.0 Identities = 682/699 (97%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18405 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 18346 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18345 cccccccag-aactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 18287 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18286 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 18227 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18226 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 18167 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 18166 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcgaaaaaacat 18107 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18106 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 18047 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18046 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 17987 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17986 aagagatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 17927 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 17926 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggggata 17867 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17866 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 17807 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17806 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 17747 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||||||||||||||||||||||||||| Sbjct: 17746 ctccataatgaccattaacagttgctcctgtagtggcca 17708
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 1271 bits (641), Expect = 0.0 Identities = 682/699 (97%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29759 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 29700 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29699 cccccccag-aactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 29641 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29640 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 29581 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29580 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 29521 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 29520 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcgaaaaaacat 29461 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29460 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 29401 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29400 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 29341 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29340 aagagatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 29281 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 29280 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggggata 29221 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29220 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 29161 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29160 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 29101 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||||||||||||||||||||||||||| Sbjct: 29100 ctccataatgaccattaacagttgctcctgtagtggcca 29062
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 1096 bits (553), Expect = 0.0 Identities = 660/699 (94%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93514 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 93455 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 93454 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaggg 93396 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93395 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 93336 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 93335 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcta 93276 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 93275 aagcccgccctgctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacat 93216 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 93215 tagacattccatcttcggaaacccttacttttgatgttacttggcgtataataatctcta 93156 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 93155 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 93096 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 93095 aagagatacgactttgggctatggttagctcagctccaatcaagaatccccagggaaccc 93036 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 93035 caagaattcttggtatacgttcattccaatcctcaattctcctttcgagattcggcgata 92976 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct: 92975 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatat 92916 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 92915 cactggatctcgatttttcatatataaacgtaactaacctatctcctttgtaaaggattt 92856 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 |||||||||||||| ||||||||||||| ||||||||| Sbjct: 92855 ttccataatgaccatgaacagttgctcctatagtggcca 92817
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 1096 bits (553), Expect = 0.0 Identities = 660/699 (94%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31887 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 31828 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 31827 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaggg 31769 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31768 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 31709 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 31708 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcta 31649 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 31648 aagcccgccctgctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacat 31589 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 31588 tagacattccatcttcggaaacccttacttttgatgttacttggcgtataataatctcta 31529 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 31528 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 31469 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 31468 aagagatacgactttgggctatggttagctcagctccaatcaagaatccccagggaaccc 31409 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 31408 caagaattcttggtatacgttcattccaatcctcaattctcctttcgagattcggcgata 31349 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct: 31348 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatat 31289 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 31288 cactggatctcgatttttcatatataaacgtaactaacctatctcctttgtaaaggattt 31229 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 |||||||||||||| ||||||||||||| ||||||||| Sbjct: 31228 ttccataatgaccatgaacagttgctcctatagtggcca 31190
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 1088 bits (549), Expect = 0.0 Identities = 659/699 (94%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31413 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 31354 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 31353 cccccccag-aactacgttttctttcagacctttcaaccaatcaatacgacctcgtaggg 31295 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31294 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 31235 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 31234 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcta 31175 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 31174 aagcccgccctgctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacat 31115 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 31114 tagacattccatcttcggaaacccttacttttgatgttacttggcgtataataatctcta 31055 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 31054 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 30995 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 30994 aagagatacgactttgggctatggttagctcagctccaatcaagaatccccagggaaccc 30935 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 30934 caagaattcttggtatacgttcattccaatcctcaattctcctttcgagattcggcgata 30875 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct: 30874 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatat 30815 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 30814 cactggatctcgatttttcatatataaacgtaactaacctatctcctttgtaaaggattt 30755 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 |||||||||||||| ||||||||||||| ||||||||| Sbjct: 30754 ttccataatgaccatgaacagttgctcctatagtggcca 30716
>emb|X17318.1|CLZMRPB Zea mays chloroplast trnC gene, rpoB gene, rpoC1 gene, rpoC2 gene and rps2 gene for transfer RNA-Cys, RNA polymerase subunits beta, beta-1, beta-2 and ribosomal protein S2 respectively Length = 12503 Score = 1088 bits (549), Expect = 0.0 Identities = 659/699 (94%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11327 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 11268 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 11267 cccccccag-aactacgttttctttcagacctttcaaccaatcaatacgacctcgtaggg 11209 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11208 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 11149 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 11148 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcta 11089 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 11088 aagcccgccctgctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacat 11029 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 11028 tagacattccatcttcggaaacccttacttttgatgttacttggcgtataataatctcta 10969 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 10968 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 10909 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 10908 aagagatacgactttgggctatggttagctcagctccaatcaagaatccccagggaaccc 10849 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 10848 caagaattcttggtatacgttcattccaatcctcaattctcctttcgagattcggcgata 10789 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct: 10788 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatat 10729 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 10728 cactggatctcgatttttcatatataaacgtaactaacctatctcctttgtaaaggattt 10669 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 |||||||||||||| ||||||||||||| ||||||||| Sbjct: 10668 ttccataatgaccatgaacagttgctcctatagtggcca 10630
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 1088 bits (549), Expect = 0.0 Identities = 659/699 (94%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31412 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 31353 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 31352 cccccccag-aactacgttttctttcagacctttcaaccaatcaatacgacctcgtaggg 31294 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31293 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 31234 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 31233 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcta 31174 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 31173 aagcccgccctgctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacat 31114 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 31113 tagacattccatcttcggaaacccttacttttgatgttacttggcgtataataatctcta 31054 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 31053 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 30994 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 30993 aagagatacgactttgggctatggttagctcagctccaatcaagaatccccagggaaccc 30934 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| Sbjct: 30933 caagaattcttggtatacgttcattccaatcctcaattctcctttcgagattcggcgata 30874 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct: 30873 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatat 30814 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 30813 cactggatctcgatttttcatatataaacgtaactaacctatctcctttgtaaaggattt 30754 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 |||||||||||||| ||||||||||||| ||||||||| Sbjct: 30753 ttccataatgaccatgaacagttgctcctatagtggcca 30715
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 1080 bits (545), Expect = 0.0 Identities = 658/699 (94%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 29081 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 29022 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 29021 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 28963 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28962 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 28903 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28902 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 28843 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 28842 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 28783 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28782 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 28723 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 28722 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 28663 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 28662 aagagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccc 28603 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 28602 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgata 28543 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 28542 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 28483 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 28482 cactagatctcgctttttcgtatataaacgtaactaacctatcccctttgtaaaggattt 28423 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||| ||||||||||||||||||||||| Sbjct: 28422 ctccataatgaccatgaacagttgctcctgtagtggcca 28384
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 1080 bits (545), Expect = 0.0 Identities = 658/699 (94%), Gaps = 1/699 (0%) Strand = Plus / Plus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 33549177 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 33549236 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 33549237 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 33549295 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33549296 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 33549355 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33549356 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 33549415 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 33549416 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 33549475 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33549476 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 33549535 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 33549536 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 33549595 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 33549596 aagagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccc 33549655 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 33549656 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgata 33549715 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 33549716 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 33549775 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 33549776 cactagatctcgctttttcgtatataaacgtaactaacctatcccctttgtaaaggattt 33549835 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||| ||||||||||||||||||||||| Sbjct: 33549836 ctccataatgaccatgaacagttgctcctgtagtggcca 33549874
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 1080 bits (545), Expect = 0.0 Identities = 658/699 (94%), Gaps = 1/699 (0%) Strand = Plus / Plus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 94374 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 94433 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 94434 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 94492 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 94493 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 94552 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 94553 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 94612 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 94613 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 94672 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 94673 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 94732 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 94733 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 94792 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 94793 aagagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccc 94852 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 94853 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgata 94912 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 94913 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 94972 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 94973 cactagatctcgctttttcgtatataaacgtaactaacctatcccctttgtaaaggattt 95032 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||| ||||||||||||||||||||||| Sbjct: 95033 ctccataatgaccatgaacagttgctcctgtagtggcca 95071
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 1072 bits (541), Expect = 0.0 Identities = 657/699 (93%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 29123 gttcttgttttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 29064 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 29063 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 29005 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29004 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 28945 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28944 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 28885 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 28884 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 28825 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28824 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 28765 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 28764 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 28705 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 28704 aagagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccc 28645 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 28644 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgata 28585 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 28584 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 28525 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 28524 cactagatctcgctttttcgtatataaacgtaactaacctatcccctttgtaaaggattt 28465 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||| ||||||||||||||||||||||| Sbjct: 28464 ctccataatgaccatgaacagttgctcctgtagtggcca 28426
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 1072 bits (541), Expect = 0.0 Identities = 657/699 (93%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 29123 gttcttgttttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 29064 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 29063 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 29005 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29004 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 28945 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28944 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 28885 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 28884 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 28825 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28824 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 28765 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 28764 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 28705 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 28704 aagagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccc 28645 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 28644 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgata 28585 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 28584 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 28525 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 28524 cactagatctcgctttttcgtatataaacgtaactaacctatcccctttgtaaaggattt 28465 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||| ||||||||||||||||||||||| Sbjct: 28464 ctccataatgaccatgaacagttgctcctgtagtggcca 28426
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 1072 bits (541), Expect = 0.0 Identities = 657/699 (93%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 29121 gttcttgttttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 29062 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 29061 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 29003 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29002 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 28943 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28942 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 28883 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 28882 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 28823 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28822 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 28763 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 28762 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 28703 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 28702 aagagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccc 28643 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 28642 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgata 28583 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 28582 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 28523 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 28522 cactagatctcgctttttcgtatataaacgtaactaacctatcccctttgtaaaggattt 28463 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||| ||||||||||||||||||||||| Sbjct: 28462 ctccataatgaccatgaacagttgctcctgtagtggcca 28424
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 1072 bits (541), Expect = 0.0 Identities = 657/699 (93%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 27337 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 27278 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 27277 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 27219 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27218 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 27159 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27158 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 27099 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 27098 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 27039 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27038 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 26979 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 26978 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 26919 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 26918 aagagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccc 26859 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 26858 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgata 26799 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 26798 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 26739 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 26738 cactagatctcgctttttcgtatataaacgtaactaacctatcccctttgtaaaggattt 26679 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||| ||||||||||||||||| ||||| Sbjct: 26678 ctccataatgaccatgaacagttgctcctgtagcggcca 26640
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from chromosome 10, complete sequence Length = 134933 Score = 1072 bits (541), Expect = 0.0 Identities = 657/699 (93%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 102270 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 102211 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 102210 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 102152 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102151 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 102092 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102091 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 102032 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 102031 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 101972 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 101971 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 101912 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 101911 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 101852 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 101851 aagagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccc 101792 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 101791 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgata 101732 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 101731 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 101672 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 101671 cactagatctcgctttttcgtatataaacgtaactaacctatcccctttgtaaaggattt 101612 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||| ||||||||||||||||| ||||| Sbjct: 101611 ctccataatgaccatgaacagttgctcctgtagcggcca 101573
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 1072 bits (541), Expect = 0.0 Identities = 657/699 (93%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10320945 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 10320886 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 10320885 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 10320827 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10320826 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 10320767 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10320766 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 10320707 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 10320706 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 10320647 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10320646 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 10320587 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 10320586 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 10320527 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 10320526 aagagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccc 10320467 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 10320466 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgata 10320407 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 10320406 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 10320347 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 10320346 cactagatctcgctttttcgtatataaacgtaactaacctatcccctttgtaaaggattt 10320287 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||| ||||||||||||||||| ||||| Sbjct: 10320286 ctccataatgaccatgaacagttgctcctgtagcggcca 10320248 Score = 147 bits (74), Expect = 6e-32 Identities = 107/118 (90%) Strand = Plus / Plus Query: 520 tcctttcgagattgggggataatgaatcaattgaacgcgcttcaaagatttgttccactt 579 ||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |||| Sbjct: 11556804 tcctttcgagattcagcgatagtgaatcaattgaacgcgctttgaagatttgttctactt 11556863 Query: 580 ttggaagaccttgcgttatgtcactagatctcgatttttcatatataaacgtaactaa 637 ||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||| Sbjct: 11556864 ttggaagaccttgcgttatgtcactagatatcgctttctcgtatataaacgtaactaa 11556921 Score = 83.8 bits (42), Expect = 7e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 638 cctatctcccttgtaaaggatttctccataatgaccattaacagttgctcctgtagtggc 697 |||||| || ||||||||| ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 11557269 cctatcccctttgtaaaggttttgtccataatgaccatgaacagttgctcctgtagtggc 11557328 Query: 698 ca 699 || Sbjct: 11557329 ca 11557330 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Plus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttgg 37 |||||||| ||||||| |||| ||||||||||||||| Sbjct: 19965478 gttcttgttttgtgggtaacggtgcacaaatttttgg 19965514
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 1072 bits (541), Expect = 0.0 Identities = 657/699 (93%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 14369460 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 14369401 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 14369400 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 14369342 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 14369341 cagcttttgctaaaactcgatcagtttcttgaaaacttgcttcagatatgaaactttggg 14369282 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14369281 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 14369222 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 14369221 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 14369162 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14369161 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 14369102 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 14369101 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 14369042 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 14369041 aagaggtacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccc 14368982 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 14368981 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgata 14368922 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 14368921 atgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 14368862 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 14368861 cactagatctcgctttttcgtatataaacgtaactaacctatcccctttgtaaaggattt 14368802 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||| ||||||||||||||||||||||| Sbjct: 14368801 ctccataatgaccatgaacagttgctcctgtagtggcca 14368763 Score = 315 bits (159), Expect = 1e-82 Identities = 189/199 (94%) Strand = Plus / Plus Query: 501 tcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacgcgct 560 |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| Sbjct: 14358389 tcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaacgcgct 14358448 Query: 561 tcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatttttca 620 || ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 14358449 tcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctttttcg 14358508 Query: 621 tatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccattaaca 680 ||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| Sbjct: 14358509 tatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccatgaaca 14358568 Query: 681 gttgctcctgtagtggcca 699 ||||||||||||||||||| Sbjct: 14358569 gttgctcctgtagtggcca 14358587 Score = 52.0 bits (26), Expect = 0.003 Identities = 35/38 (92%) Strand = Plus / Plus Query: 23 tgcacaaatttttggaatccggtaccaacaggtataat 60 ||||||||||||| ||||| ||||| |||||||||||| Sbjct: 13401571 tgcacaaatttttagaatctggtactaacaggtataat 13401608 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ttttggattttattaaccaa 421 |||||||||||||||||||| Sbjct: 474301 ttttggattttattaaccaa 474320
>dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0022A24 Length = 148347 Score = 1072 bits (541), Expect = 0.0 Identities = 657/699 (93%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 91382 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 91323 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 91322 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 91264 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 91263 cagcttttgctaaaactcgatcagtttcttgaaaacttgcttcagatatgaaactttggg 91204 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91203 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 91144 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 91143 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 91084 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91083 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 91024 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 91023 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 90964 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 90963 aagaggtacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccc 90904 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 90903 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgata 90844 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 90843 atgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 90784 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 90783 cactagatctcgctttttcgtatataaacgtaactaacctatcccctttgtaaaggattt 90724 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||| ||||||||||||||||||||||| Sbjct: 90723 ctccataatgaccatgaacagttgctcctgtagtggcca 90685 Score = 315 bits (159), Expect = 1e-82 Identities = 189/199 (94%) Strand = Plus / Plus Query: 501 tcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacgcgct 560 |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| Sbjct: 80311 tcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaacgcgct 80370 Query: 561 tcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatttttca 620 || ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 80371 tcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctttttcg 80430 Query: 621 tatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccattaaca 680 ||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| Sbjct: 80431 tatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccatgaaca 80490 Query: 681 gttgctcctgtagtggcca 699 ||||||||||||||||||| Sbjct: 80491 gttgctcctgtagtggcca 80509
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 1072 bits (541), Expect = 0.0 Identities = 657/699 (93%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10326984 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 10326925 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 10326924 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 10326866 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10326865 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 10326806 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10326805 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 10326746 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 10326745 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 10326686 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10326685 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 10326626 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 10326625 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 10326566 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 10326565 aagagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccc 10326506 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 10326505 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgata 10326446 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 10326445 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 10326386 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 10326385 cactagatctcgctttttcgtatataaacgtaactaacctatcccctttgtaaaggattt 10326326 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||| ||||||||||||||||| ||||| Sbjct: 10326325 ctccataatgaccatgaacagttgctcctgtagcggcca 10326287 Score = 147 bits (74), Expect = 6e-32 Identities = 107/118 (90%) Strand = Plus / Plus Query: 520 tcctttcgagattgggggataatgaatcaattgaacgcgcttcaaagatttgttccactt 579 ||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |||| Sbjct: 11563244 tcctttcgagattcagcgatagtgaatcaattgaacgcgctttgaagatttgttctactt 11563303 Query: 580 ttggaagaccttgcgttatgtcactagatctcgatttttcatatataaacgtaactaa 637 ||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||| Sbjct: 11563304 ttggaagaccttgcgttatgtcactagatatcgctttctcgtatataaacgtaactaa 11563361 Score = 83.8 bits (42), Expect = 7e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 638 cctatctcccttgtaaaggatttctccataatgaccattaacagttgctcctgtagtggc 697 |||||| || ||||||||| ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 11563709 cctatcccctttgtaaaggttttgtccataatgaccatgaacagttgctcctgtagtggc 11563768 Query: 698 ca 699 || Sbjct: 11563769 ca 11563770 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Plus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttgg 37 |||||||| ||||||| |||| ||||||||||||||| Sbjct: 19976754 gttcttgttttgtgggtaacggtgcacaaatttttgg 19976790
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 1072 bits (541), Expect = 0.0 Identities = 657/699 (93%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 29055 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 28996 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| ||||| |||| || Sbjct: 28995 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgaccacgtaagg 28937 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28936 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 28877 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28876 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 28817 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 28816 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 28757 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28756 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 28697 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 28696 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 28637 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 28636 aagagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccc 28577 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 28576 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgata 28517 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 28516 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 28457 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 28456 cactagatctcgctttttcgtatataaacgtaactaacctatcccctttgtaaaggattt 28397 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||| ||||||||||||||||||||||| Sbjct: 28396 ctccataatgaccatgaacagttgctcctgtagtggcca 28358
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 1057 bits (533), Expect = 0.0 Identities = 655/699 (93%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 112494 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 112435 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 112434 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 112376 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112375 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 112316 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112315 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 112256 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 112255 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 112196 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112195 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 112136 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct: 112135 tatgtctattatggatctgtaccccttgggattgataaaccttttggatcttattaacca 112076 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 112075 gagagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccc 112016 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 112015 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgata 111956 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 111955 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 111896 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 111895 cactagatctcgctttttcgtatataaacgtaactaacctatcccctttgtaaaggattt 111836 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 | ||||||||||||| ||||||||||||||||||||||| Sbjct: 111835 ccccataatgaccatgaacagttgctcctgtagtggcca 111797
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 1057 bits (533), Expect = 0.0 Identities = 655/699 (93%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 9258373 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 9258314 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 9258313 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 9258255 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9258254 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 9258195 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9258194 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 9258135 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 9258134 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 9258075 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9258074 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 9258015 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct: 9258014 tatgtctattatggatctgtaccccttgggattgataaaccttttggatcttattaacca 9257955 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 9257954 gagagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccc 9257895 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 9257894 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgata 9257835 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 9257834 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 9257775 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 9257774 cactagatctcgctttttcgtatataaacgtaactaacctatcccctttgtaaaggattt 9257715 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 | ||||||||||||| ||||||||||||||||||||||| Sbjct: 9257714 ccccataatgaccatgaacagttgctcctgtagtggcca 9257676 Score = 1057 bits (533), Expect = 0.0 Identities = 655/699 (93%), Gaps = 1/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 9154468 gttcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 9154409 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 9154408 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 9154350 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9154349 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 9154290 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9154289 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 9154230 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 9154229 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 9154170 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9154169 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 9154110 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct: 9154109 tatgtctattatggatctgtaccccttgggattgataaaccttttggatcttattaacca 9154050 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 9154049 gagagatacgactttgggctatggttaactcagctccaatcaagaatccccaaggacccc 9153990 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 9153989 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattcggcgata 9153930 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 9153929 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 9153870 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 9153869 cactagatctcgctttttcgtatataaacgtaactaacctatcccctttgtaaaggattt 9153810 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 | ||||||||||||| ||||||||||||||||||||||| Sbjct: 9153809 ccccataatgaccatgaacagttgctcctgtagtggcca 9153771 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ttttggattttattaaccaa 421 |||||||||||||||||||| Sbjct: 29603158 ttttggattttattaaccaa 29603177
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 1047 bits (528), Expect = 0.0 Identities = 655/699 (93%), Gaps = 2/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 119889 gttcttgtcttgtaggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 119830 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 119829 cccccc-ag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 119772 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119771 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 119712 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119711 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 119652 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 119651 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 119592 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119591 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 119532 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 119531 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 119472 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| |||||||||||||||||||||| || |||||||||||||||||||||||| ||| Sbjct: 119471 aagagatacgactttgggctatggttaacttagctccaatcaagaatccccaaggacccc 119412 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 119411 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagatttggcgata 119352 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 119351 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 119292 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| || ||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 119291 cactagatctcgcttgttcgtatataaacgtaactaacctatcccctttgtaaaggattt 119232 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||| ||||||||||||||||||||||| Sbjct: 119231 ctccataatgaccatgaacagttgctcctgtagtggcca 119193 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ttttggattttattaaccaa 421 |||||||||||||||||||| Sbjct: 92293 ttttggattttattaaccaa 92312
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 1047 bits (528), Expect = 0.0 Identities = 655/699 (93%), Gaps = 2/699 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 12822430 gttcttgtcttgtaggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 12822371 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 12822370 cccccc-ag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 12822313 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12822312 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 12822253 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12822252 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 12822193 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 12822192 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtgaaaaaacat 12822133 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12822132 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 12822073 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 12822072 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 12822013 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| |||||||||||||||||||||| || |||||||||||||||||||||||| ||| Sbjct: 12822012 aagagatacgactttgggctatggttaacttagctccaatcaagaatccccaaggacccc 12821953 Query: 481 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggata 540 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 12821952 caagaattcttggtatacgctcattccaatcctcaattctcctttcgagatttggcgata 12821893 Query: 541 atgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgt 600 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 12821892 gtgaatcaattgaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatgt 12821833 Query: 601 cactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggattt 660 |||||||||||| || ||| ||||||||||||||||||||||| || ||||||||||||| Sbjct: 12821832 cactagatctcgcttgttcgtatataaacgtaactaacctatcccctttgtaaaggattt 12821773 Query: 661 ctccataatgaccattaacagttgctcctgtagtggcca 699 ||||||||||||||| ||||||||||||||||||||||| Sbjct: 12821772 ctccataatgaccatgaacagttgctcctgtagtggcca 12821734 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ttttggattttattaaccaa 421 |||||||||||||||||||| Sbjct: 12794834 ttttggattttattaaccaa 12794853
>gb|DQ069545.1| Typha latifolia RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4161 Score = 803 bits (405), Expect = 0.0 Identities = 611/683 (89%), Gaps = 1/683 (0%) Strand = Plus / Minus Query: 17 gaacgatgcacaaatttttggaatccggtaccaacaggtataatnnnnnnnagnaactac 76 |||||||||||||||||||||||||| ||||||||||||||||| || ||| || Sbjct: 3986 gaacgatgcacaaatttttggaatccagtaccaacaggtataatcccccctag-aacaac 3928 Query: 77 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 136 ||| ||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct: 3927 gttctctttcaggcctttcaaccaatcaatacgacctcgtaaagcagcttttgctaaaac 3868 Query: 137 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccct 196 ||||||||||||||||||||||||||| |||||||||||||| |||||||| || || || Sbjct: 3867 tcgagcagtttcttgaaaacttgcttcggatatgaaactttgagtattcagagatgctct 3808 Query: 197 tgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcg 256 |||||||||||||||||||||||||||| |||||||||||| |||||| |||||||| || Sbjct: 3807 tgttattcccaataagattgcccgataacagatcgattcattcaaagcgcgccctgcgcg 3748 Query: 257 ttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttc 316 |||||||||||| | |||||||||||| ||||| ||||||||||||||||||| Sbjct: 3747 ttccgctcgcaacaatccgattaattctccaggtgaaaaaacattagacattccatcttc 3688 Query: 317 ggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatggat 376 |||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct: 3687 tgaaaccaatacttttgatgttacttgacgtacaataatctctatatgtctattatggat 3628 Query: 377 ctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttg 436 ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 3627 ctgtaccccctgggatcgataaaccttttggatcttattaaccaaagagatacgactttg 3568 Query: 437 ggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtat 496 ||||||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||| Sbjct: 3567 agctatggttagctcagctccaattaagaacccccaggggatcccaagaattcttggtat 3508 Query: 497 acgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacg 556 ||| || |||||| | |||| |||||||||||| || |||| ||||||||| ||||| Sbjct: 3507 acgttcgttccaaccttcaactctcctttcgaggttcatcgatattgaatcaatcgaacg 3448 Query: 557 cgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgattt 616 | |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 3447 cacttctaagatttgttccacttttggaagaccttgcgttatgtcaccagatctcgattt 3388 Query: 617 ttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccatt 676 |||||||||||| |||||||| ||||||| | |||||||||||| ||||||||||||| Sbjct: 3387 ttcatatataaatgtaactaatgtatctccttcgtaaaggatttccccataatgaccatg 3328 Query: 677 aacagttgctcctgtagtggcca 699 |||||||||||||| |||||||| Sbjct: 3327 aacagttgctcctggagtggcca 3305
>emb|X52270.1|CHZMATPI Maize chloroplast 3'part of rpoC2 gene, rps2 gene, atpI gene and 5'part of atpH gene Length = 3463 Score = 767 bits (387), Expect = 0.0 Identities = 461/489 (94%), Gaps = 1/489 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 488 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 429 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 428 cccccccag-aactacgttttctttcagacctttcaaccaatcaatacgacctcgtaggg 370 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 310 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 309 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcta 250 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 249 aagcccgccctgctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacat 190 Query: 301 tagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctcta 360 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 189 tagacattccatcttcggaaacccttacttttgatgttacttggcgtataataatctcta 130 Query: 361 tatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaacca 420 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 129 tatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaacca 70 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccc 480 |||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct: 69 aagagatacgactttgggctatggttagctcagctccaatcaagaatccccagggaaccc 10 Query: 481 caagaattc 489 ||||||||| Sbjct: 9 caagaattc 1
>gb|DQ069546.1| Yucca schidigera RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4152 Score = 660 bits (333), Expect = 0.0 Identities = 548/622 (88%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 3932 ttttctttcaaacccttcaaccaatcaatacgaccccgtagagcagcttttgctaaaact 3873 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 197 | |||||||||||||||||||||||| |||||||||||||| |||||||| || ||||| Sbjct: 3872 ctagcagtttcttgaaaacttgcttcggatatgaaactttgagtattcagagatgccctc 3813 Query: 198 gttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgt 257 |||||||||||||| |||||||||||| |||||| ||| || ||||| |||||||||||| Sbjct: 3812 gttattcccaataaaattgcccgataacagatcgcttcgtctaaagcacgccctgctcgt 3753 Query: 258 tccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttcg 317 ||||||||||| | |||||||||||| ||||| |||||||||||||||||| Sbjct: 3752 tccgctcgcaacaatccgattaattctccaggtaaaaaaagattagacattccatcttct 3693 Query: 318 gaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatggatc 377 |||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct: 3692 gaaaccaacacttttgatgttacttgccgtacaataatctctatatgtctattatggatc 3633 Query: 378 tgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttgg 437 |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 3632 tgtaccccctgggatcgataaaccttttggatcttattaaccaaagagatacgactttgg 3573 Query: 438 gctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtata 497 ||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| Sbjct: 3572 gctatggttagctcagctccaattaagaatccccaaggaattccaagaattcttggtata 3513 Query: 498 cgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacgc 557 ||||| |||||| | |||| ||||||||| || || |||| |||| |||| || || Sbjct: 3512 cgctcgttccaaccttcaactctcctttcaaggttcattgatattgaaccaatcgagcga 3453 Query: 558 gcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatttt 617 |||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 3452 acttctaagatttgttccacttttggaagaccttgcgttatgtcaccagatcgggatttt 3393 Query: 618 tcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccatta 677 ||||||||||| |||||||| ||||||| | ||||| ||||||||||||| |||| | Sbjct: 3392 tcatatataaatgtaactaatgtatctccttcaaaaagggtttctccataatgtccatga 3333 Query: 678 acagttgctcctgtagtggcca 699 ||||| || |||| |||||||| Sbjct: 3332 acagtcgcccctggagtggcca 3311
>emb|AJ222797.1|CHMSINTER Miscanthus sinensis chloroplast DNA rpoC2-rps2 intergenic spacer Length = 960 Score = 656 bits (331), Expect = 0.0 Identities = 450/489 (92%), Gaps = 4/489 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgca-caaatttttggaatccggtaccaacaggtataa 59 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 491 gttcttgtcttgtggggaacgatgcagcaaatttttggaatccggtaccaacaggtataa 432 Query: 60 tnnnnnnnagnaactacg-ttttctttcaagcctttcaacc-aatcaatgcgacctcgta 117 | || ||||||| |||||||||| |||| |||||| ||||||| |||||||||| Sbjct: 431 tcccccccag-aactacggttttctttcaggcctgtcaacccaatcaatacgacctcgta 373 Query: 118 gggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaacttt 177 ||||||||||| | | |||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 372 gggcagcttttctgagagctcgagcagtttcttgaacacttgcttcagatatgacacttt 313 Query: 178 gggtattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcat 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 gggtattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcat 253 Query: 238 ccaaagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnn 297 | ||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 252 ctaaagcccgccctgctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaa 193 Query: 298 cattagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatct 357 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 192 cattagacattccatcttcggaaacccttacttttgatgttacttggcgtataataatct 133 Query: 358 ctatatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaa 417 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 132 ctatatgtctattatggatctgtaccccttgggatcgataaaccttttggatcttattaa 73 Query: 418 ccaaagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaaggga 477 |||| || ||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct: 72 ccaaggagatacgactttgggctatggttagctcagctccaatcaagaatccccagggaa 13 Query: 478 ccccaagaa 486 ||||||||| Sbjct: 12 ccccaagaa 4
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 636 bits (321), Expect = e-179 Identities = 587/679 (86%), Gaps = 1/679 (0%) Strand = Plus / Plus Query: 17 gaacgatgcacaaatttttggaatccggtaccaacaggtataatnnnnnnnagnaactac 76 |||||||| || ||||| | ||||||||||||||| |||||||| || ||| || Sbjct: 17279 gaacgatgtactaatttattgaatccggtaccaaccggtataattccccccag-aacaac 17337 Query: 77 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 136 ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 17338 gttttctttcaggcctttcaaccaatcaatacgacctcgtagagcagcttttgctaaaac 17397 Query: 137 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccct 196 ||||||||||||||||||||||||||| |||||||||||||| |||||||| || | | | Sbjct: 17398 tcgagcagtttcttgaaaacttgcttcggatatgaaactttgagtattcagagatgactt 17457 Query: 197 tgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcg 256 ||||||||||||||||||||||||||| |||| ||||| ||||| | ||||||||||| Sbjct: 17458 cgttattcccaataagattgcccgataacagattgattcggccaaaacgcgccctgctcg 17517 Query: 257 ttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttc 316 ||| |||||||| | ||| || ||||||||||| ||||||||||||||||||| Sbjct: 17518 ttctgctcgcaacaatccaataaattccccaggtaaaaaaacattagacattccatcttc 17577 Query: 317 ggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatggat 376 ||||||| ||| ||||||||||||| |||| ||||||||||| ||||||||||||||| Sbjct: 17578 ggaaaccaaaactcttgatgttacttgacgtacaataatctctagatgtctattatggat 17637 Query: 377 ctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttg 436 ||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||| Sbjct: 17638 ctgtaccccctgggatcgataaaccttttgtatcttattaaccaaagagatacgactttg 17697 Query: 437 ggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtat 496 |||||||||||| ||||||||||||||||||||||| |||| ||||||||| ||| | || Sbjct: 17698 ggctatggttagttcagctccaatcaagaatccccaggggatcccaagaatccttcggat 17757 Query: 497 acgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacg 556 ||| || | |||| | |||| ||| |||||||| || |||| ||||||||||||||| Sbjct: 17758 acgttcgtcccaaccttcaactcttctttcgaggttcatcgatattgaatcaattgaacg 17817 Query: 557 cgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgattt 616 |||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| || Sbjct: 17818 aacttctaagatttgttctacttttggaagaccttgcgttatgtcaccagatctcgactt 17877 Query: 617 ttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccatt 676 |||||||||||| |||| ||| ||||||| | |||| | |||| ||||||||||||| Sbjct: 17878 ttcatatataaatgtaattaatgtatctccttcataaaaggtttccccataatgaccatg 17937 Query: 677 aacagttgctcctgtagtg 695 ||||||||||||| |||| Sbjct: 17938 gacagttgctcctggagtg 17956
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 563 bits (284), Expect = e-157 Identities = 538/625 (86%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||||| |||||||||||||||||| ||||||||||| || |||||||||||| Sbjct: 17304 acgttctctttcaggcctttcaaccaatcaatacgacctcgtagagcggcttttgctaaa 17363 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||| || ||| Sbjct: 17364 actcgagcggtttcttgaaaactcgcttcggatatgaaactttgagtattcaaagatgcc 17423 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 || ||||||||||||||||| || || ||| |||||| ||| |||||||| ||||| | | Sbjct: 17424 ctcgttattcccaataagatagctcggtaacagatcgcttcttccaaagcacgcccggtt 17483 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 |||||||||||||| | |||||||| ||| || || ||||||||||||||||| Sbjct: 17484 cgttccgctcgcaacaatccgattagttctccgggtgaaaaaacattagacattccatct 17543 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| |||| ||||||||| ||| |||| ||||||||||||||| ||||||||| Sbjct: 17544 tctgaaaccaacactcttgatgttatttgacgtacaataatctctatatgcctattatgg 17603 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct: 17604 atctgcaccccctgggaccgataaaccttttggatcttattaaccaaagaaatacgactt 17663 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || ||||||||||||||||| |||||||||||||||||||| | |||||||||| ||| | Sbjct: 17664 tgcgctatggttagctcagcaccaatcaagaatccccaaggaatcccaagaatttttgtt 17723 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 ||||| || |||||| | |||| ||| |||| || || |||| ||||||||| ||| Sbjct: 17724 atacgttcgttccaaccttcaaccctcttttctaggttcatcgatattgaatcaatcgaa 17783 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 |||||||| || | ||||||||||||||||||||||| ||||| |||| ||||||||| Sbjct: 17784 cgcgcttctaacacctgttccacttttggaagaccttgtgttatatcacccgatctcgat 17843 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||||||| | |||||||||||||||| |||| ||| Sbjct: 17844 ttttcatatataaatgtaactaatgtatctccttcgtaaaggatttctccacaatggcca 17903 Query: 675 ttaacagttgctcctgtagtggcca 699 | ||| |||||||| | |||||||| Sbjct: 17904 tgaacggttgctcccggagtggcca 17928
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 525 bits (265), Expect = e-146 Identities = 525/614 (85%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||||||||||| ||||||||||||||| || ||||| || || ||||||||||||||| Sbjct: 17520 acgttttctttcaggcctttcaaccaatcgatacgaccccggagagcagcttttgctaaa 17579 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 ||||||||||||||||||||||||||||||||||| |||||||| || ||||| || || Sbjct: 17580 actcgagcagtttcttgaaaacttgcttcagatataaaactttgagtgttcagagatgct 17639 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 || |||||||||||||| | || |||||| | |||| ||| || ||||| ||||| | | Sbjct: 17640 ctcgttattcccaataaaacggctcgataacaaatcgcttcttctaaagcacgccccgtt 17699 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 |||||||||||||||| ||| || | |||||| || ||||||||||||||||| Sbjct: 17700 cgttccgctcgcaataatccaatcagttccccgggtaaaaaaacattagacattccatct 17759 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| ||||||||||||| ||| |||| |||||| |||||||| ||||||||| Sbjct: 17760 tctgaaaccaatacttttgatgttatttgacgtacaataatttctatatgcctattatgg 17819 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||||||||| || |||||||||||||||||||| |||||||||||||| | ||||||| Sbjct: 17820 atctgtaccccctgagatcgataaaccttttggatcttattaaccaaagagagacgactt 17879 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || |||| ||||||||||| ||||||| |||||||||||| | ||||||||||||| | Sbjct: 17880 tgcactatagttagctcagcaccaatcacgaatccccaaggaattccaagaattcttgtt 17939 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 |||| || |||||| ||||||||||| |||| || || |||| ||||||||| ||| Sbjct: 17940 atacattcgttccaaccctcaattctcttttctaggttcatcgatattgaatcaatcgaa 17999 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| || | ||||||||||||||||||||| |||||||| |||| |||||||||| Sbjct: 18000 cgcacttctaacacttgttccacttttggaagaccctgcgttatatcaccagatctcgat 18059 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| ||||||||| ||||||| | ||||||| ||||||||||||| ||| Sbjct: 18060 ttttcatatataaatgtaactaacgtatctccttcgtaaagggtttctccataatgccca 18119 Query: 675 ttaacagttgctcc 688 | ||||||||||| Sbjct: 18120 tggacagttgctcc 18133
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 523 bits (264), Expect = e-145 Identities = 533/625 (85%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||| | ||||||||||||||| || || || || || |||||||| |||||| Sbjct: 18209 acgttctcttttaggcctttcaaccaatcgatacggccccggagagcagctttggctaaa 18268 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 ||||||||||||||||||||||| |||||||||||||||||||| ||||||| || ||| Sbjct: 18269 actcgagcagtttcttgaaaactcgcttcagatatgaaactttgagtattcaaagatgcc 18328 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 |||||||||||||||| ||| || || ||| |||||||||| |||||||| ||||| | | Sbjct: 18329 cttgttattcccaataggatggcgcggtaacagatcgattcttccaaagcgcgccccgtt 18388 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 || |||||||||| | ||| |||| ||| ||||| |||||||||||||||| Sbjct: 18389 cgcgccgctcgcaacaatccaattagttctccaggtaaaaaaacattagacattccatcc 18448 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| ||| |||||||||| |||||||| |||||| ||||| || ||||||||| Sbjct: 18449 tctgaaaccaacacctttgatgttatttggcgtacaataatttctatgtgcctattatgg 18508 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 || || ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct: 18509 atttgcaccccctgggatcgataaaccttttggatcttattaaccaaagatatacgactt 18568 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || |||| ||||| ||||| |||||||||||||||||||| | ||||||||| || | Sbjct: 18569 tgcactatagttagttcagccccaatcaagaatccccaaggaattccaagaatttttttt 18628 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 ||| |||| |||||| |||||||||| |||| || || |||| ||||||||||||| Sbjct: 18629 atatgctcgttccaaccctcaattcttttttctaggttcatcgatattgaatcaattgaa 18688 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| || | ||||||||||||||||||||| |||||||| |||| ||||||||| Sbjct: 18689 cgcacttctaacacttgttccacttttggaagaccctgcgttatatcaccggatctcgat 18748 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||||||| | ||||||||||||||||||||||||| Sbjct: 18749 ttttcatatataaatgtaactaatgtatctccttcgtaaaggatttctccataatgacca 18808 Query: 675 ttaacagttgctcctgtagtggcca 699 | |||||||||||||| |||||||| Sbjct: 18809 tgaacagttgctcctggagtggcca 18833
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 502 bits (253), Expect = e-139 Identities = 558/663 (84%), Gaps = 1/663 (0%) Strand = Plus / Plus Query: 37 gaatccggtaccaacaggtataatnnnnnnnagnaactacgttttctttcaagcctttca 96 ||||||||||||||||||||| || || ||| ||||||||||| | ||||||| Sbjct: 15495 gaatccggtaccaacaggtatcatcccccccag-aacaacgttttcttttagtcctttca 15553 Query: 97 accaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttcttgaaaac 156 |||||||||| || || ||||| || |||||||||||||||||||||||||||||||||| Sbjct: 15554 accaatcaatacggccccgtagagctgcttttgctaaaactcgagcagtttcttgaaaac 15613 Query: 157 ttgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaataagattg 216 | ||||| || || |||||||| |||||||| || || || ||||||||||||||| | | Sbjct: 15614 tcgcttcggagataaaactttgagtattcagagatgctctcgttattcccaataaggtag 15673 Query: 217 cccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaatagtccga 276 | || ||| | |||| ||| |||||||| || || | ||||||||| || || | ||| | Sbjct: 15674 cgcggtaacatatcgcttcttccaaagcgcgtcccgttcgttccgcccgaaacaatccaa 15733 Query: 277 ttaattccccaggcnnnnnnncattagacattccatcttcggaaacccgcacttttgatg 336 ||| ||| || ||| ||||||||||||||||||| |||||| |||||||||| Sbjct: 15734 ttagttctccgggcaaaaaaacattagacattccatcttctgaaaccaagacttttgatg 15793 Query: 337 ttacttggcgtataataatctctatatgtctattatggatctgtaccccttgggatcgat 396 ||| ||| |||| |||||| ||||||||||||||||||||||| |||||||| ||||||| Sbjct: 15794 ttatttgacgtacaataatttctatatgtctattatggatctgcaccccttgtgatcgat 15853 Query: 397 aaaccttttggattttattaaccaaagaaatacgactttgggctatggttagctcagctc 456 ||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||| | Sbjct: 15854 aaaccttttggatcttgttaaccaaagaaatacgactttgcgctatagttagctcagccc 15913 Query: 457 caatcaagaatccccaagggaccccaagaattcttggtatacgctcattccaatcctcaa 516 ||||||||||||||||||| ||||||||||||| |||||| || |||||| |||| Sbjct: 15914 caatcaagaatccccaaggacttccaagaattcttgttatacgttcgttccaactatcaa 15973 Query: 517 ttctcctttcgagattgggggataatgaatcaattgaacgcgcttcaaagatttgttcca 576 | ||| |||| |||||| ||||| ||||||||| ||||| |||| |||| |||||||| Sbjct: 15974 tcctcttttctagattgatggatattgaatcaatcgaacgaacttctaagacttgttcca 16033 Query: 577 cttttggaagaccttgcgttatgtcactagatctcgatttttcatatataaacgtaacta 636 ||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| Sbjct: 16034 cttttggaagaccttgcgttatgtcaccagacctcgatttttcatatataaatgtaacta 16093 Query: 637 acctatctcccttgtaaaggatttctccataatgaccattaacagttgctcctgtagtgg 696 | |||| || | |||| |||||||||||||||||||| || |||||||||| ||| | Sbjct: 16094 atgtatccccttcataaatgatttctccataatgaccatgaagtgttgctcctggagtag 16153 Query: 697 cca 699 ||| Sbjct: 16154 cca 16156
>gb|AY521596.1| Cucumis sativus isolate GY-14, chloroplast sequence Length = 16653 Score = 492 bits (248), Expect = e-136 Identities = 529/625 (84%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| |||||||| ||| |||||||||| || |||||||| ||||| |||||||||||| Sbjct: 6993 acgttctctttcaaacctctcaaccaatcgatacgacctcggagggcggcttttgctaaa 7052 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 ||||||||||||||||||||||||||||| |||||||||||||| ||||| || || || Sbjct: 7053 actcgagcagtttcttgaaaacttgcttccgatatgaaactttgagtatttagagatgct 7112 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 | |||||||||||||| | || || ||| |||||| ||| |||||||| ||||||| | Sbjct: 7113 ttcgttattcccaataatacggctcggtaacagatcgcttcttccaaagcacgccctgtt 7172 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 ||||||||||| || | || || | ||| ||||| ||||||||||||||||| Sbjct: 7173 cgttccgctcgtaacaacccaatgagttctccaggtgaaaaaacattagacattccatct 7232 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| |||||||||||||| ||| |||| |||||| || ||||||||||||||| Sbjct: 7233 tctgaaaccaacacttttgatgttatttgacgtacaataatttcgatatgtctattatgg 7292 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 |||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct: 7293 atctccaccccctgggatcgataaaccttttggatcttattaaccaaagagatacgactt 7352 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || |||| ||||| ||||| |||||||| ||||||||||| | ||||||||||||| | Sbjct: 7353 tgcactatcgttagttcagcaccaatcaaaaatccccaaggaattccaagaattcttgtt 7412 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 |||||||| |||||| ||||||||||| |||| || | |||| ||||||||| ||| Sbjct: 7413 atacgctcgttccaaccctcaattctcttttctaggctcatcgatattgaatcaatcgaa 7472 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| || | |||||| |||||||||||||| |||||||| |||| ||||| ||| Sbjct: 7473 cgcacttctaatacttgttcgacttttggaagaccctgcgttatatcaccagatcgtgat 7532 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||||||| | |||||||||||| |||||||| | | Sbjct: 7533 ttttcatatataaatgtaactaaagtatctccttcgtaaaggatttcgccataatggcga 7592 Query: 675 ttaacagttgctcctgtagtggcca 699 | |||||||||||||| |||||||| Sbjct: 7593 tgaacagttgctcctgaagtggcca 7617
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 492 bits (248), Expect = e-136 Identities = 529/625 (84%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| |||||||| ||| |||||||||| || |||||||| ||||| |||||||||||| Sbjct: 17594 acgttctctttcaaacctctcaaccaatcgatacgacctcggagggcggcttttgctaaa 17653 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 ||||||||||||||||||||||||||||| |||||||||||||| ||||| || || || Sbjct: 17654 actcgagcagtttcttgaaaacttgcttccgatatgaaactttgagtatttagagatgct 17713 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 | |||||||||||||| | || || ||| |||||| ||| |||||||| ||||||| | Sbjct: 17714 ttcgttattcccaataatacggctcggtaacagatcgcttcttccaaagcacgccctgtt 17773 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 ||||||||||| || | || || | ||| ||||| ||||||||||||||||| Sbjct: 17774 cgttccgctcgtaacaacccaatgagttctccaggtgaaaaaacattagacattccatct 17833 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| |||||||||||||| ||| |||| |||||| || ||||||||||||||| Sbjct: 17834 tctgaaaccaacacttttgatgttatttgacgtacaataatttcgatatgtctattatgg 17893 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 |||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct: 17894 atctccaccccctgggatcgataaaccttttggatcttattaaccaaagagatacgactt 17953 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || |||| ||||| ||||| |||||||| ||||||||||| | ||||||||||||| | Sbjct: 17954 tgcactatcgttagttcagcaccaatcaaaaatccccaaggaattccaagaattcttgtt 18013 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 |||||||| |||||| ||||||||||| |||| || | |||| ||||||||| ||| Sbjct: 18014 atacgctcgttccaaccctcaattctcttttctaggctcatcgatattgaatcaatcgaa 18073 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| || | |||||| |||||||||||||| |||||||| |||| ||||| ||| Sbjct: 18074 cgcacttctaatacttgttcgacttttggaagaccctgcgttatatcaccagatcgtgat 18133 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||||||| | |||||||||||| |||||||| | | Sbjct: 18134 ttttcatatataaatgtaactaaagtatctccttcgtaaaggatttcgccataatggcga 18193 Query: 675 ttaacagttgctcctgtagtggcca 699 | |||||||||||||| |||||||| Sbjct: 18194 tgaacagttgctcctgaagtggcca 18218
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 492 bits (248), Expect = e-136 Identities = 529/625 (84%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| |||||||| ||| |||||||||| || |||||||| ||||| |||||||||||| Sbjct: 17583 acgttctctttcaaacctctcaaccaatcgatacgacctcggagggcggcttttgctaaa 17642 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 ||||||||||||||||||||||||||||| |||||||||||||| ||||| || || || Sbjct: 17643 actcgagcagtttcttgaaaacttgcttccgatatgaaactttgagtatttagagatgct 17702 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 | |||||||||||||| | || || ||| |||||| ||| |||||||| ||||||| | Sbjct: 17703 ttcgttattcccaataatacggctcggtaacagatcgcttcttccaaagcacgccctgtt 17762 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 ||||||||||| || | || || | ||| ||||| ||||||||||||||||| Sbjct: 17763 cgttccgctcgtaacaacccaatgagttctccaggtgaaaaaacattagacattccatct 17822 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| |||||||||||||| ||| |||| |||||| || ||||||||||||||| Sbjct: 17823 tctgaaaccaacacttttgatgttatttgacgtacaataatttcgatatgtctattatgg 17882 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 |||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct: 17883 atctccaccccctgggatcgataaaccttttggatcttattaaccaaagagatacgactt 17942 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || |||| ||||| ||||| |||||||| ||||||||||| | ||||||||||||| | Sbjct: 17943 tgcactatcgttagttcagcaccaatcaaaaatccccaaggaattccaagaattcttgtt 18002 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 |||||||| |||||| ||||||||||| |||| || | |||| ||||||||| ||| Sbjct: 18003 atacgctcgttccaaccctcaattctcttttctaggctcatcgatattgaatcaatcgaa 18062 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| || | |||||| |||||||||||||| |||||||| |||| ||||| ||| Sbjct: 18063 cgcacttctaatacttgttcgacttttggaagaccctgcgttatatcaccagatcgtgat 18122 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||||||| | |||||||||||| |||||||| | | Sbjct: 18123 ttttcatatataaatgtaactaaagtatctccttcgtaaaggatttcgccataatggcga 18182 Query: 675 ttaacagttgctcctgtagtggcca 699 | |||||||||||||| |||||||| Sbjct: 18183 tgaacagttgctcctgaagtggcca 18207
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 486 bits (245), Expect = e-134 Identities = 520/614 (84%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||||||||| | ||||||||||||||| || ||||| | || ||||||||||||||| Sbjct: 18389 acgttttcttttaggcctttcaaccaatcgatacgaccccacagagcagcttttgctaaa 18448 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 ||||||||||||||||||||||| || || |||||||||||||| |||||||| || || Sbjct: 18449 actcgagcagtttcttgaaaactcgcctcggatatgaaactttgagtattcagagacgct 18508 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 || |||||||||||||| || | || ||| | || | ||| || ||||| ||||| | | Sbjct: 18509 ctcgttattcccaataaaatggttcggtaacaaatagcttcttcgaaagcacgccccgtt 18568 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 |||||||||||||| | ||| |||| ||| || ||| ||||||||||||||||| Sbjct: 18569 cgttccgctcgcaacaatccaattagttctccgggcgaaaaaacattagacattccatct 18628 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| |||||||||||||| ||| |||| |||||| |||||||| ||||||||| Sbjct: 18629 tctgaaaccaacacttttgatgttatttgacgtacaataatttctatatgcctattatgg 18688 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct: 18689 atctgaaccccctgggatcgataaaccttttggatcttattaactaaagagatacgactt 18748 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || ||||| ||||||||||| ||||| |||||||||||||| | ||||||||||||| | Sbjct: 18749 tgcgctatagttagctcagcaccaatgaagaatccccaaggaattccaagaattcttgtt 18808 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 ||| |||| |||||| |||||| |||| |||| || || |||| |||||||| ||| Sbjct: 18809 atatgctcgttccaaccctcaactctcttttctaggttcatcgatatggaatcaatcgaa 18868 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| || | ||||||||||||||||||||| |||||||| |||| |||||| ||| Sbjct: 18869 cgcacttctaacacttgttccacttttggaagaccctgcgttatatcaccagatcttgat 18928 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||||||| | |||||||||||| |||||||| ||| Sbjct: 18929 ttttcatatataaatgtaactaatgtatctccttcgtaaaggatttccccataatgtcca 18988 Query: 675 ttaacagttgctcc 688 | |||||||||||| Sbjct: 18989 tgaacagttgctcc 19002
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 484 bits (244), Expect = e-133 Identities = 528/625 (84%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 18077 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagctgcttttgctaaa 18136 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| || || Sbjct: 18137 actcgagcagtttcttgaaaactcgcttcggatatgaaactttgagtattcagagatgct 18196 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 |||||||||||||||||| || | ||| |||||| ||| |||||||| || || | Sbjct: 18197 tttgttattcccaataagacggcttggtaacagatcgcttcttccaaagcgcgacccatt 18256 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 |||||||||||||| | ||| || ||||| || || |||||||||| |||||| Sbjct: 18257 cgttccgctcgcaacaatccaataaattctccgggtaaaaaaacattagacatcccatct 18316 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| |||||||||||||| ||| |||| |||||| |||||||| ||||||||| Sbjct: 18317 tctgaaaccaacacttttgatgttatttgacgtacaataatttctatatgcctattatgg 18376 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 18377 atctgcaccccctgggatcgataaaccttttggatcttattaaccaaagaaatacgactt 18436 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || |||| ||||||||||| |||||||||||||||||||| | |||||| |||||| | Sbjct: 18437 tgcactatagttagctcagccccaatcaagaatccccaaggaattccaagatttcttgtt 18496 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 |||| || ||||| |||||| ||| |||||||||| |||| ||||||||| ||| Sbjct: 18497 atacattcgttccagccctcaaccctcttttcgagattcatcgatattgaatcaatcgaa 18556 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| || | ||||| |||||||||||||| |||||||| |||| ||||| |||| Sbjct: 18557 cgcacttctaacacctgttcgacttttggaagaccctgcgttatatcaccagatcgcgat 18616 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||||||| | |||||||||||| |||||||| ||| Sbjct: 18617 ttttcatatataaatgtaactaatgtatctccttcgtaaaggatttccccataatggcca 18676 Query: 675 ttaacagttgctcctgtagtggcca 699 | |||||||||||||| ||||||| Sbjct: 18677 tgaacagttgctcctggggtggcca 18701
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 470 bits (237), Expect = e-129 Identities = 518/614 (84%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 16981 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17040 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 |||||||||||||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 17041 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgagtattgagagatgct 17100 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17101 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17160 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17161 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17220 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||| | |||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17221 tctgaaatcaacacttttgatgttatttgacgtacaataatttctatatgcctattatga 17280 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17281 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17340 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct: 17341 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttggt 17400 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 |||| | |||||| |||||| ||| |||| ||||| ||||| ||||||||| ||| Sbjct: 17401 atacatttgttccaaccctcaaccctcttttctagattcatggatattgaatcaatcgaa 17460 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| |||| ||||| |||||||||||||| || ||||| |||| |||||||||| Sbjct: 17461 cgcacttctaagacctgttctacttttggaagaccctgtgttatatcaccagatctcgat 17520 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||||||| | ||||||| |||| |||||||| ||| Sbjct: 17521 ttttcatatataaatgtaactaatgtatctccttcgtaaagggtttccccataatggcca 17580 Query: 675 ttaacagttgctcc 688 | |||||||||||| Sbjct: 17581 tgaacagttgctcc 17594
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 470 bits (237), Expect = e-129 Identities = 518/614 (84%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 16978 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17037 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 |||||||||||||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 17038 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgagtattgagagatgct 17097 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17098 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17157 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17158 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17217 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||| | |||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17218 tctgaaatcaacacttttgatgttatttgacgtacaataatttctatatgcctattatga 17277 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17278 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17337 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct: 17338 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttggt 17397 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 |||| | |||||| |||||| ||| |||| ||||| ||||| ||||||||| ||| Sbjct: 17398 atacatttgttccaaccctcaaccctcttttctagattcatggatattgaatcaatcgaa 17457 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| |||| ||||| |||||||||||||| || ||||| |||| |||||||||| Sbjct: 17458 cgcacttctaagacctgttctacttttggaagaccctgtgttatatcaccagatctcgat 17517 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||||||| | ||||||| |||| |||||||| ||| Sbjct: 17518 ttttcatatataaatgtaactaatgtatctccttcgtaaagggtttccccataatggcca 17577 Query: 675 ttaacagttgctcc 688 | |||||||||||| Sbjct: 17578 tgaacagttgctcc 17591
>gb|DQ069541.1| Acorus americanus RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4158 Score = 468 bits (236), Expect = e-128 Identities = 526/625 (84%) Strand = Plus / Minus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||||| ||||||||||||||||| ||||| ||||| || |||||||| ||| Sbjct: 3938 acgttctctttcaggcctttcaaccaatcaacacgaccccgtagagccgcttttgccaaa 3879 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| || || Sbjct: 3878 actcgagcagtttcttgaaaactcgcttcggatatgaaactttgagtattcaaagacgct 3819 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 ||||||||||||||||||||||| |||||| |||||| ||| |||||||| || |||| | Sbjct: 3818 cttgttattcccaataagattgctcgataacagatcgcttcttccaaagcgcgacctgtt 3759 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 |||||||| ||||| | |||||| | ||| || || ||||||||||||||||| Sbjct: 3758 cgttccgcccgcaacaatccgataagttctcccggtgaaaaaacattagacattccatct 3699 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| |||||||||||||| ||| |||| ||||||||||||||| ||||||| Sbjct: 3698 tctgaaaccaacacttttgatgttatttgacgtacaataatctctatatgcttattatga 3639 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| || ||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct: 3638 atctgcaccccctgagatcgataaactttttggatcttattaaccaaagagatacgactt 3579 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || |||||||||| ||| || || |||||||||||||| || | ||||||||| ||| | Sbjct: 3578 tgcgctatggttaactcggcgccgatcaagaatccccagggaattccaagaatttttgtt 3519 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 ||| | || |||||| | |||| || ||||||| || | |||| |||||||||||| Sbjct: 3518 atatgttcgttccaaccttcaacccttttttcgaggttcgtcgatatggaatcaattgaa 3459 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 || |||| || | |||||| |||||||||||||| |||||||| |||| |||||| ||| Sbjct: 3458 cgtacttctaacacttgttctacttttggaagaccctgcgttatatcaccagatcttgat 3399 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||| ||| ||||||| |||||| |||||||||||||| ||| Sbjct: 3398 ttttcatatataaatgtaattaatgtatctcctccgtaaagtatttctccataatggcca 3339 Query: 675 ttaacagttgctcctgtagtggcca 699 | |||||||||||||| |||||||| Sbjct: 3338 tgaacagttgctcctggagtggcca 3314
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 468 bits (236), Expect = e-128 Identities = 526/625 (84%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||||| ||||||||||||||||| ||||| ||||| || |||||||| ||| Sbjct: 16891 acgttctctttcaggcctttcaaccaatcaacacgaccccgtagagccgcttttgccaaa 16950 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| || || Sbjct: 16951 actcgagcagtttcttgaaaactcgcttcggatatgaaactttgagtattcaaagacgct 17010 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 ||||||||||||||||||||||| |||||| |||||| ||| |||||||| || |||| | Sbjct: 17011 cttgttattcccaataagattgctcgataacagatcgcttcttccaaagcgcgacctgtt 17070 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 |||||||| ||||| | |||||| | ||| || || ||||||||||||||||| Sbjct: 17071 cgttccgcccgcaacaatccgataagttctcccggtgaaaaaacattagacattccatct 17130 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| |||||||||||||| ||| |||| ||||||||||||||| ||||||| Sbjct: 17131 tctgaaaccaacacttttgatgttatttgacgtacaataatctctatatgcttattatga 17190 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| || ||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct: 17191 atctgcaccccctgagatcgataaactttttggatcttattaaccaaagagatacgactt 17250 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || |||||||||| ||| || || |||||||||||||| || | ||||||||| ||| | Sbjct: 17251 tgcgctatggttaactcggcgccgatcaagaatccccagggaattccaagaatttttgtt 17310 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 ||| | || |||||| | |||| || ||||||| || | |||| |||||||||||| Sbjct: 17311 atatgttcgttccaaccttcaacccttttttcgaggttcgtcgatatggaatcaattgaa 17370 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 || |||| || | |||||| |||||||||||||| |||||||| |||| |||||| ||| Sbjct: 17371 cgtacttctaacacttgttctacttttggaagaccctgcgttatatcaccagatcttgat 17430 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||| ||| ||||||| |||||| |||||||||||||| ||| Sbjct: 17431 ttttcatatataaatgtaattaatgtatctcctccgtaaagtatttctccataatggcca 17490 Query: 675 ttaacagttgctcctgtagtggcca 699 | |||||||||||||| |||||||| Sbjct: 17491 tgaacagttgctcctggagtggcca 17515
>dbj|AK062380.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B08, full insert sequence Length = 714 Score = 466 bits (235), Expect = e-128 Identities = 306/333 (91%), Gaps = 1/333 (0%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataat 60 |||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct: 332 gttcttgttttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtataat 273 Query: 61 nnnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgtaggg 120 || ||||||||||||||||| |||||||||||||||||| |||||||||| || Sbjct: 272 cccccccag-aactacgttttctttcaggcctttcaaccaatcaatacgacctcgtaagg 214 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 213 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttggg 154 Query: 181 tattcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatcca 240 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 153 tattcagggaaacccttgttattcccaataagattgcccgataatagatcgattcatcca 94 Query: 241 aagctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncat 300 |||| ||||||||||| || |||||||||||||| |||||||||||||| ||| Sbjct: 93 aagcccgccctgctcgctctgctcgcaatagtccaattaattccccaggtaaaaaaacat 34 Query: 301 tagacattccatcttcggaaacccgcacttttg 333 ||||||||||||||||||||||||||||||||| Sbjct: 33 tagacattccatcttcggaaacccgcacttttg 1
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 462 bits (233), Expect = e-127 Identities = 517/614 (84%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17161 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17220 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 ||||||||||||||||||||||| |||||||||||||||||||| ||||| || || || Sbjct: 17221 actcgagcagtttcttgaaaactcgcttcagatatgaaactttgagtattgagagatgct 17280 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17281 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17340 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17341 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17400 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| |||||||||||||| ||| |||| |||||| ||||||||||||||||| Sbjct: 17401 tctgaaaccaacacttttgatgttatttgacgtacaataatttctatatgtctattatga 17460 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17461 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17520 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||| | Sbjct: 17521 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgtt 17580 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 |||| | |||||| |||||| ||| |||| ||||| ||||| ||||||||| ||| Sbjct: 17581 atacatttgttccaaccctcaaccctcttttctagattcatggatattgaatcaatcgaa 17640 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| || | ||||| |||||||||||||| || ||||| |||| |||||||||| Sbjct: 17641 cgcacttctaacacctgttctacttttggaagaccctgtgttatatcaccagatctcgat 17700 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||||||| | ||||||| |||| |||||||| ||| Sbjct: 17701 ttttcatatataaatgtaactaatgtatctccttcgtaaagggtttccccataatggcca 17760 Query: 675 ttaacagttgctcc 688 | |||||||||||| Sbjct: 17761 tgaacagttgctcc 17774
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 462 bits (233), Expect = e-127 Identities = 517/614 (84%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17123 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17182 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 |||||||||||||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 17183 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgagtattgagagatgct 17242 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17243 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17302 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17303 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17362 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||| | |||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17363 tctgaaatcaacacttttgatgttatttgacgtacaataatttctatatgcctattatga 17422 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17423 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17482 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct: 17483 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttggt 17542 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 |||| | |||||| ||||| ||| |||| ||||| ||||| ||||||||| ||| Sbjct: 17543 atacatttgttccaactctcaaccctcttttctagattcatggatattgaatcaatcgaa 17602 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| |||| ||||| |||||||||||||| || ||||| |||| |||||||||| Sbjct: 17603 cgcacttctaagacctgttctacttttggaagaccctgtgttatatcaccagatctcgat 17662 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||||||| | ||||||| |||| |||||||| ||| Sbjct: 17663 ttttcatatataaatgtaactaatgtatctccttcgtaaagggtttccccataatggcca 17722 Query: 675 ttaacagttgctcc 688 | |||||||||||| Sbjct: 17723 tgaacagttgctcc 17736
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 462 bits (233), Expect = e-127 Identities = 517/614 (84%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17011 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17070 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 |||||||||||||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 17071 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgagtattgagagatgct 17130 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17131 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17190 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17191 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17250 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||| | |||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17251 tctgaaatcaacacttttgatgttatttgacgtacaataatttctatatgcctattatga 17310 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17311 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17370 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct: 17371 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttggt 17430 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 |||| | |||||| ||||| ||| |||| ||||| ||||| ||||||||| ||| Sbjct: 17431 atacatttgttccaactctcaaccctcttttctagattcatggatattgaatcaatcgaa 17490 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| |||| ||||| |||||||||||||| || ||||| |||| |||||||||| Sbjct: 17491 cgcacttctaagacctgttctacttttggaagaccctgtgttatatcaccagatctcgat 17550 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||||||| | ||||||| |||| |||||||| ||| Sbjct: 17551 ttttcatatataaatgtaactaatgtatctccttcgtaaagggtttccccataatggcca 17610 Query: 675 ttaacagttgctcc 688 | |||||||||||| Sbjct: 17611 tgaacagttgctcc 17624
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 462 bits (233), Expect = e-127 Identities = 517/614 (84%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17340 acgttctctttcaggcctttcaaccaatcgatacgaccccgaagagccgcttttgctaaa 17399 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 ||||||||||| ||||||||||| |||||||||||||||||||| ||||| || || || Sbjct: 17400 actcgagcagtctcttgaaaactcgcttcagatatgaaactttgagtattgagagatgct 17459 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17460 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17519 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17520 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17579 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| |||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17580 tctgaaaccaacacttttgatgttatttgacgtacaataatttctatatgcctattatga 17639 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17640 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17699 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||| | Sbjct: 17700 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgtt 17759 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 |||| | |||||| ||||||| ||| |||| ||||| ||||| ||||||||| ||| Sbjct: 17760 atacatttgttccaaccctcaatcctcttttctagattcatggatattgaatcaatcgaa 17819 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| || | ||||| ||||||||||||||||| ||||| |||| |||||||||| Sbjct: 17820 cgcacttctaatacctgttctacttttggaagaccttgtgttatatcaccagatctcgat 17879 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||||||| | ||||||| |||| |||||||| ||| Sbjct: 17880 ttttcatatataaatgtaactaatgtatctccttcgtaaagggtttccccataatggcca 17939 Query: 675 ttaacagttgctcc 688 | |||||||||||| Sbjct: 17940 tgaacagttgctcc 17953
>gb|AY757830.1|AY757829S2 Acorus gramineus RpoC2 (rpoC2) gene, partial cds; chloroplast Length = 1809 Score = 460 bits (232), Expect = e-126 Identities = 525/625 (84%) Strand = Plus / Minus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||||| ||||||||||||||||| ||||| ||||| || |||||||| ||| Sbjct: 1586 acgttctctttcaggcctttcaaccaatcaacacgaccccgtagagccgcttttgccaaa 1527 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| || || Sbjct: 1526 actcgagcagtttcttgaaaactcgcttcggatatgaaactttgagtattcaaagacgct 1467 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 ||||||||||||||||||||||| |||||| ||||| ||| |||||||| || |||| | Sbjct: 1466 cttgttattcccaataagattgctcgataacggatcgcttcttccaaagcgcgacctgtt 1407 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 |||||||| ||||| | |||||| | ||| || || ||||||||||||||||| Sbjct: 1406 cgttccgcccgcaacaatccgataagttctcccggtgaaaaaacattagacattccatct 1347 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| |||||||||||||| ||| |||| ||||||||||||||| ||||||| Sbjct: 1346 tctgaaaccaacacttttgatgttatttgacgtacaataatctctatatgcttattatga 1287 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| || ||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct: 1286 atctgcaccccctgagatcgataaactttttggatcttattaaccaaagagatacgactt 1227 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || |||||||||| ||| || || |||||||||||||| || | ||||||||| ||| | Sbjct: 1226 tgcgctatggttaactcggcgccgatcaagaatccccagggaattccaagaatttttgtt 1167 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 ||| | || |||||| | |||| || ||||||| || | |||| |||||||||||| Sbjct: 1166 atatgttcgttccaaccttcaacccttttttcgaggttcgtcgatatggaatcaattgaa 1107 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 || |||| || | |||||| |||||||||||||| |||||||| |||| |||||| ||| Sbjct: 1106 cgtacttctaacacttgttctacttttggaagaccctgcgttatatcaccagatcttgat 1047 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||| ||| ||||||| |||||| |||||||||||||| ||| Sbjct: 1046 ttttcatatataaatgtaattaatgtatctcctacgtaaagtatttctccataatggcca 987 Query: 675 ttaacagttgctcctgtagtggcca 699 | |||||||||||||| |||||||| Sbjct: 986 tgaacagttgctcctggagtggcca 962
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 460 bits (232), Expect = e-126 Identities = 525/625 (84%) Strand = Plus / Minus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||||||||| | ||||||||||||||| || || ||| | || || |||||||||||| Sbjct: 23129 acgttttcttttaggcctttcaaccaatcgatacgccctaggagagctgcttttgctaaa 23070 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||| ||| || Sbjct: 23069 actcgagcggtttcttgaaaactcgcttcggatatgaaactttgagtattcatggatgct 23010 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 ||||||||||||||||||| || | ||| |||||| ||| |||||||| ||||| | Sbjct: 23009 cttgttattcccaataagacggcttggtaacagatcgcttcttccaaagcgcgccccatt 22950 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 |||||||||||||| | ||| |||| ||| || ||| ||||||||||| ||||| Sbjct: 22949 cgttccgctcgcaacaatccaattagttctccgggcgaaaaaacattagacatttcatct 22890 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| |||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 22889 tctgaaaccaacacttttgatgttatttgacgtacaataatttctatatgcctattatgt 22830 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| |||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct: 22829 atctgcaccccctgggatcgataaaccttttggaccttattaaccaaagagatacgactt 22770 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || |||| ||||||| ||| ||||| |||||| ||||||| | ||||||||||||| | Sbjct: 22769 tgcactatagttagcttagcaccaataaagaatgcccaaggaattccaagaattcttgtt 22710 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 |||| | |||||| ||||||| ||| |||| ||||| |||| ||||||||| ||| Sbjct: 22709 atacatttgttccaaccctcaatcctcttttcaagattcatcgatattgaatcaatcgaa 22650 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| || | ||||||||||||||||||||||||||||| |||| |||||| ||| Sbjct: 22649 cgcacttctaacacctgttccacttttggaagaccttgcgttatatcaccagatcttgat 22590 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||||||| | |||||||||||| || ||||| ||| Sbjct: 22589 ttttcatatataaatgtaactaatgtatctccttcgtaaaggatttccccgtaatgtcca 22530 Query: 675 ttaacagttgctcctgtagtggcca 699 | |||||||||||||| ||| |||| Sbjct: 22529 tgaacagttgctcctggagtagcca 22505
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 454 bits (229), Expect = e-124 Identities = 516/614 (84%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17390 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17449 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 ||||||||||||||||||||||| |||||||||||||||||||| ||||| || || || Sbjct: 17450 actcgagcagtttcttgaaaactcgcttcagatatgaaactttgagtattgagagatgct 17509 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17510 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17569 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17570 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17629 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| |||||||||||||| ||| |||| |||||| |||| ||| |||||||| Sbjct: 17630 tctgaaaccaacacttttgatgttatttgacgtacaataatttctagatgcctattatga 17689 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17690 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17749 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||| | Sbjct: 17750 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgtt 17809 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 |||| | |||||| ||||||| ||| |||| ||||| ||||| |||||||| ||| Sbjct: 17810 atacatttgttccaaccctcaatcctcttttctagattcatggatattgaatcaaccgaa 17869 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| || | ||||| ||||||||||||||||| ||||| |||| |||||||||| Sbjct: 17870 cgcacttctaacacctgttctacttttggaagaccttgtgttatatcaccagatctcgat 17929 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||||||| | ||||||| |||| |||||||| ||| Sbjct: 17930 ttttcatatataaatgtaactaatgtatctccttcgtaaagggtttccccataatggcca 17989 Query: 675 ttaacagttgctcc 688 | |||||||||||| Sbjct: 17990 tgaacagttgctcc 18003
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 454 bits (229), Expect = e-124 Identities = 495/586 (84%) Strand = Plus / Plus Query: 90 cctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttct 149 ||||||||||||||||| ||||| || || || |||||||||||||||| |||||||||| Sbjct: 79536 cctttcaaccaatcaatacgaccccgaagagcggcttttgctaaaactctagcagtttct 79595 Query: 150 tgaaaacttgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaat 209 |||||||| ||||| |||||||||||||| |||||||| || | |||||||||||||| Sbjct: 79596 tgaaaactcgcttcggatatgaaactttgagtattcagagatgtttttgttattcccaat 79655 Query: 210 aagattgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaat 269 || | || || ||| | || | ||| ||||| || ||||| | |||||| ||||||||| Sbjct: 79656 aataaagctcggtaacaaattgcttcttccaaggcacgcccagttcgttctgctcgcaat 79715 Query: 270 agtccgattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgcact 329 | ||| |||||||| || || ||||||||||||||||||| |||||| ||| Sbjct: 79716 aatccaattaattcaccgggtaaaaatacattagacattccatcttctgaaaccaagact 79775 Query: 330 tttgatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgg 389 || ||||||| ||| || | |||||| || ||||||||||||||||| ||||| || ||| Sbjct: 79776 ttggatgttatttgacgcacaataatttcgatatgtctattatggatgtgtactccctgg 79835 Query: 390 gatcgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttagc 449 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 79836 gatcgataaaccttttggattttattaaccaaagaaatacgactttgcgctatagttagc 79895 Query: 450 tcagctccaatcaagaatccccaagggaccccaagaattcttggtatacgctcattccaa 509 ||||| |||||||||||||||||||| | || |||||||||| ||||| |||||||||| Sbjct: 79896 tcagcaccaatcaagaatccccaaggaatgccgagaattcttgttatacactcattccaa 79955 Query: 510 tcctcaattctcctttcgagattgggggataatgaatcaattgaacgcgcttcaaagatt 569 | |||||||| |||||||||| |||| ||||||||| ||||| ||| || || Sbjct: 79956 gcatcaattcttttttcgagattcatcgatattgaatcaatcgaacgtatttctaatatc 80015 Query: 570 tgttccacttttggaagaccttgcgttatgtcactagatctcgatttttcatatataaac 629 ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| || Sbjct: 80016 tgttccacttttggaagaccttgtgttatatcactggatctcgatttttcatatatgaat 80075 Query: 630 gtaactaacctatctcccttgtaaaggatttctccataatgaccat 675 |||||||| ||||||| | |||||||||||||||||||| |||| Sbjct: 80076 gtaactaaaatatctccttgataaaggatttctccataatggccat 80121
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 454 bits (229), Expect = e-124 Identities = 516/614 (84%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17388 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17447 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 ||||||||||||||||||||||| |||||||||||||||||||| ||||| || || || Sbjct: 17448 actcgagcagtttcttgaaaactcgcttcagatatgaaactttgagtattgagagatgct 17507 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17508 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17567 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17568 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17627 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| |||||||||||||| ||| |||| |||||| |||| ||| |||||||| Sbjct: 17628 tctgaaaccaacacttttgatgttatttgacgtacaataatttctagatgcctattatga 17687 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17688 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17747 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||| | Sbjct: 17748 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgtt 17807 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 |||| | |||||| ||||||| ||| |||| ||||| ||||| |||||||| ||| Sbjct: 17808 atacatttgttccaaccctcaatcctcttttctagattcatggatattgaatcaaccgaa 17867 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| || | ||||| ||||||||||||||||| ||||| |||| |||||||||| Sbjct: 17868 cgcacttctaacacctgttctacttttggaagaccttgtgttatatcaccagatctcgat 17927 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||||||| | ||||||| |||| |||||||| ||| Sbjct: 17928 ttttcatatataaatgtaactaatgtatctccttcgtaaagggtttccccataatggcca 17987 Query: 675 ttaacagttgctcc 688 | |||||||||||| Sbjct: 17988 tgaacagttgctcc 18001
>gb|DQ069543.1| Nuphar advena RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4170 Score = 452 bits (228), Expect = e-124 Identities = 512/609 (84%) Strand = Plus / Minus Query: 81 tctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcga 140 ||||||| |||||||||||||||||| ||||| || || || |||||||||||||||||| Sbjct: 3950 tctttcaggcctttcaaccaatcaatacgaccccggagagcggcttttgctaaaactcga 3891 Query: 141 gcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcccttgtt 200 || ||||| |||||||| ||||| |||||||||||||| |||||||| || || || ||| Sbjct: 3890 gcggtttcctgaaaactagcttctgatatgaaactttgagtattcagagatgctctcgtt 3831 Query: 201 attcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgttcc 260 ||||||||||||| || || ||| | || | || |||||||| || ||||||||||| Sbjct: 3830 attcccaataagacggctcggtaacaaatagcctcttccaaagcacgacctgctcgttct 3771 Query: 261 gctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttcggaa 320 |||||||| | |||||||| |||||| || ||||||||||||||||||| ||| Sbjct: 3770 gctcgcaacaatccgattagttccccgggtgaaaaaacattagacattccatcttctgaa 3711 Query: 321 acccgcacttttgatgttacttggcgtataataatctctatatgtctattatggatctgt 380 ||| |||||||||||||| ||| |||| ||||||||||||||| |||||||| |||||| Sbjct: 3710 accaacacttttgatgttatttgtcgtacaataatctctatatgcctattatgaatctgt 3651 Query: 381 accccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttgggct 440 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct: 3650 accccctgggatcgataaaccttttggatcttattaaccaaagaaatacgactttgcgct 3591 Query: 441 atggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtatacgc 500 ||||| || ||||| ||||||| |||||||||||| | |||||||||| || |||| | Sbjct: 3590 atggtgagttcagcaccaatcaggaatccccaaggaattccaagaattcctgttatatgt 3531 Query: 501 tcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacgcgct 560 || |||||| | |||| || |||| || || |||| ||||||||||||||| || Sbjct: 3530 tcgttccaaccttcaacccttttttctaggttcatcgatattgaatcaattgaacgaact 3471 Query: 561 tcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatttttca 620 || || | |||||| || |||||||| || || ||||| |||| |||||||||||||||| Sbjct: 3470 tctaacacttgttcaacctttggaaggccatgagttatatcaccagatctcgatttttca 3411 Query: 621 tatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccattaaca 680 |||||||| |||||||| ||||||| | ||||| |||||||||||||| ||||| ||| Sbjct: 3410 tatataaatgtaactaatgtatctccttcgtaaaagatttctccataatcaccatgaacg 3351 Query: 681 gttgctcct 689 ||||||||| Sbjct: 3350 gttgctcct 3342
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 436 bits (220), Expect = e-119 Identities = 522/625 (83%) Strand = Plus / Minus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||||||||||| ||||||||||||||| || || || | || || |||||||||||| Sbjct: 23069 acgttttctttcaggcctttcaaccaatcgatacggcccaggagagctgcttttgctaaa 23010 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 |||| |||||||||||||||||| ||||| |||||||||||||| ||||||| || || Sbjct: 23009 actctagcagtttcttgaaaactagcttcggatatgaaactttgagtattcatagatgct 22950 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 ||||||||||||||||||| || | ||| |||||| ||| |||||||| || || | Sbjct: 22949 cttgttattcccaataagacggcttggtaacagatcgcttcttccaaagcgcgtcccatt 22890 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 |||||||||||||| | ||| |||| ||| || ||| ||||||||||| ||||| Sbjct: 22889 cgttccgctcgcaacaatccaattagttctccgggcgaaaaaacattagacatttcatct 22830 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| ||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 22829 tctgaaaccaaaacttttgatgttatttgacgtacaataatttctatatgcctattatgt 22770 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| ||||| |||||||||||||||| |||||||||||||| ||||||||| Sbjct: 22769 atctgcaccccctgggagcgataaaccttttggaccttattaaccaaagagatacgactt 22710 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || |||| ||||| ||||| |||||||||||| ||||||| | ||||||||||||| | Sbjct: 22709 tgcactatagttagttcagcaccaatcaagaatgcccaaggaattccaagaattcttgtt 22650 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 ||| | |||||| ||||||| ||| |||||||||| |||| ||||||||| ||| Sbjct: 22649 atagatttgttccaaccctcaatcctcttttcgagattcatcgatattgaatcaatcgaa 22590 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| || | ||||||||||||||||||||||||||||| |||| |||||| ||| Sbjct: 22589 cgcacttctaacacctgttccacttttggaagaccttgcgttatatcaccagatcttgat 22530 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| |||| || | |||||||||||| |||||||| ||| Sbjct: 22529 ttttcatatataaatgtaactaatgtatcgccttcgtaaaggatttccccataatgtcca 22470 Query: 675 ttaacagttgctcctgtagtggcca 699 | |||||||||||||| ||| |||| Sbjct: 22469 tgaacagttgctcctggagtagcca 22445
>gb|AY865171.1| Lactuca sativa chloroplast inversion region Length = 28722 Score = 436 bits (220), Expect = e-119 Identities = 522/625 (83%) Strand = Plus / Minus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||||||||||| ||||||||||||||| || || || | || || |||||||||||| Sbjct: 17009 acgttttctttcaggcctttcaaccaatcgatacggcccaggagagctgcttttgctaaa 16950 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 |||| |||||||||||||||||| ||||| |||||||||||||| ||||||| || || Sbjct: 16949 actctagcagtttcttgaaaactagcttcggatatgaaactttgagtattcatagatgct 16890 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 ||||||||||||||||||| || | ||| |||||| ||| |||||||| || || | Sbjct: 16889 cttgttattcccaataagacggcttggtaacagatcgcttcttccaaagcgcgtcccatt 16830 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 |||||||||||||| | ||| |||| ||| || ||| ||||||||||| ||||| Sbjct: 16829 cgttccgctcgcaacaatccaattagttctccgggcgaaaaaacattagacatttcatct 16770 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| ||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 16769 tctgaaaccaaaacttttgatgttatttgacgtacaataatttctatatgcctattatgt 16710 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| ||||| |||||||||||||||| |||||||||||||| ||||||||| Sbjct: 16709 atctgcaccccctgggagcgataaaccttttggaccttattaaccaaagagatacgactt 16650 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || |||| ||||| ||||| |||||||||||| ||||||| | ||||||||||||| | Sbjct: 16649 tgcactatagttagttcagcaccaatcaagaatgcccaaggaattccaagaattcttgtt 16590 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 ||| | |||||| ||||||| ||| |||||||||| |||| ||||||||| ||| Sbjct: 16589 atagatttgttccaaccctcaatcctcttttcgagattcatcgatattgaatcaatcgaa 16530 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| || | ||||||||||||||||||||||||||||| |||| |||||| ||| Sbjct: 16529 cgcacttctaacacctgttccacttttggaagaccttgcgttatatcaccagatcttgat 16470 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| |||| || | |||||||||||| |||||||| ||| Sbjct: 16469 ttttcatatataaatgtaactaatgtatcgccttcgtaaaggatttccccataatgtcca 16410 Query: 675 ttaacagttgctcctgtagtggcca 699 | |||||||||||||| ||| |||| Sbjct: 16409 tgaacagttgctcctggagtagcca 16385
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 436 bits (220), Expect = e-119 Identities = 522/625 (83%) Strand = Plus / Minus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||| | |||||||||||||||||| ||||| || || || ||||| |||||| Sbjct: 49487 acgttctcttttaggcctttcaaccaatcaatacgaccccggagagccgctttagctaaa 49428 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| || | Sbjct: 49427 actcgagcagtttcttgaaaactcgcttcggatatgaaactttgagtattcaaagatgtt 49368 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 |||||||||||||||| || ||| ||| |||||||||| |||||||| ||||| | Sbjct: 49367 cttgttattcccaataggaaggccttgtaacagatcgattcttccaaagcgcgccccgtc 49308 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 |||||||||||||| | ||| |||| ||| | ||| |||||||||||||||| Sbjct: 49307 cgttccgctcgcaacaatccaattagttctctaggtaaaaaaacattagacattccatcc 49248 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| |||||| ||||||| |||||||| |||||| || || || ||||||||| Sbjct: 49247 tctgaaaccaacactttggatgttatttggcgtacaataatttcgatgtgcctattatgg 49188 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 || || ||||| ||||||||||||||||||||||| |||||||||||||| || |||||| Sbjct: 49187 atttggaccccctgggatcgataaaccttttggatcttattaaccaaagagatccgactt 49128 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || |||| ||||||||||| |||||||||||||||||||| | ||||||||||||| | Sbjct: 49127 tgcactatagttagctcagccccaatcaagaatccccaaggaaatccaagaattcttgtt 49068 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 ||| |||| ||||||| ||||| ||| |||| || || |||| |||||||| |||| Sbjct: 49067 atatgctcgttccaattctcaactcttttttctaggttcaccgatattgaatcaactgaa 49008 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| || | |||||||||||||||||||| |||||||| |||| ||||||||| Sbjct: 49007 cgcacttctaacacctgttccacttttggaagaccctgcgttatatcaccggatctcgat 48948 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||| ||| || |||| ||||||| | |||||||||||||||||||| ||| Sbjct: 48947 ttttcatatagaaatgtcactactgtatctccgtcataaaggatttctccataatgtcca 48888 Query: 675 ttaacagttgctcctgtagtggcca 699 | |||||||||||||| |||||||| Sbjct: 48887 tgaacagttgctcctggagtggcca 48863
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 436 bits (220), Expect = e-119 Identities = 522/625 (83%) Strand = Plus / Minus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||||||||||| ||||||||||||||| || || || | || || |||||||||||| Sbjct: 23069 acgttttctttcaggcctttcaaccaatcgatacggcccaggagagctgcttttgctaaa 23010 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 |||| |||||||||||||||||| ||||| |||||||||||||| ||||||| || || Sbjct: 23009 actctagcagtttcttgaaaactagcttcggatatgaaactttgagtattcatagatgct 22950 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 ||||||||||||||||||| || | ||| |||||| ||| |||||||| || || | Sbjct: 22949 cttgttattcccaataagacggcttggtaacagatcgcttcttccaaagcgcgtcccatt 22890 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 |||||||||||||| | ||| |||| ||| || ||| ||||||||||| ||||| Sbjct: 22889 cgttccgctcgcaacaatccaattagttctccgggcgaaaaaacattagacatttcatct 22830 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| ||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 22829 tctgaaaccaaaacttttgatgttatttgacgtacaataatttctatatgcctattatgt 22770 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| ||||| |||||||||||||||| |||||||||||||| ||||||||| Sbjct: 22769 atctgcaccccctgggagcgataaaccttttggaccttattaaccaaagagatacgactt 22710 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || |||| ||||| ||||| |||||||||||| ||||||| | ||||||||||||| | Sbjct: 22709 tgcactatagttagttcagcaccaatcaagaatgcccaaggaattccaagaattcttgtt 22650 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 ||| | |||||| ||||||| ||| |||||||||| |||| ||||||||| ||| Sbjct: 22649 atagatttgttccaaccctcaatcctcttttcgagattcatcgatattgaatcaatcgaa 22590 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| || | ||||||||||||||||||||||||||||| |||| |||||| ||| Sbjct: 22589 cgcacttctaacacctgttccacttttggaagaccttgcgttatatcaccagatcttgat 22530 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| |||| || | |||||||||||| |||||||| ||| Sbjct: 22529 ttttcatatataaatgtaactaatgtatcgccttcgtaaaggatttccccataatgtcca 22470 Query: 675 ttaacagttgctcctgtagtggcca 699 | |||||||||||||| ||| |||| Sbjct: 22469 tgaacagttgctcctggagtagcca 22445
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 430 bits (217), Expect = e-117 Identities = 513/614 (83%) Strand = Plus / Plus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17123 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17182 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 |||||||||||||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 17183 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgagtattgagagatgct 17242 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 17243 cttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccatt 17302 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 ||||| |||||||| | ||| || | ||| || || ||||||||||||||||| Sbjct: 17303 cgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatct 17362 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||| | |||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17363 tctgaaatcaacacttttgatgttatttgacgtacaataatttctatatgcctattatga 17422 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || ||| Sbjct: 17423 atctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggctt 17482 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| Sbjct: 17483 tgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttggt 17542 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 |||| | |||||| ||||| ||| |||| ||||| ||||| ||||||||| ||| Sbjct: 17543 atacatttgttccaactctcaaccctcttttctagattcatggatattgaatcaatcgaa 17602 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 ||| |||| |||| ||||| |||||||||||||| || ||||| ||| |||| ||||| Sbjct: 17603 cgcacttctaagacctgttctacttttggaagaccctgtgttatatcatcagatatcgat 17662 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| |||||||| ||| ||| | || |||| |||| |||||||| ||| Sbjct: 17663 ttttcatatataaatgtaactaatgtatttccttggttaagggtttccccataatggcca 17722 Query: 675 ttaacagttgctcc 688 | |||||||||||| Sbjct: 17723 tgaacagttgctcc 17736
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 412 bits (208), Expect = e-112 Identities = 507/609 (83%) Strand = Plus / Plus Query: 81 tctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcga 140 ||||||| ||||||||||||||||| ||||| || || || |||||||||||||||||| Sbjct: 18752 tctttcagacctttcaaccaatcaatacgaccccggagagcggcttttgctaaaactcga 18811 Query: 141 gcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcccttgtt 200 || ||||| |||||||| ||||| |||||||||||||| |||||||| || || || ||| Sbjct: 18812 gcggtttcctgaaaactagcttctgatatgaaactttgagtattcagagatgctctcgtt 18871 Query: 201 attcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgttcc 260 ||||||||||||| || || ||| | || | || |||||||| || ||||||||||| Sbjct: 18872 attcccaataagacggctcggtaacaaatagcctcttccaaagcacgacctgctcgttct 18931 Query: 261 gctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttcggaa 320 |||||||| | |||||||| |||||| || ||||||||||||||||||| ||| Sbjct: 18932 gctcgcaacaatccgattagttccccgggtgaaaaaacattagacattccatcttctgaa 18991 Query: 321 acccgcacttttgatgttacttggcgtataataatctctatatgtctattatggatctgt 380 ||| |||||||||||||| ||| |||| ||||||||||||||| ||||||| |||||| Sbjct: 18992 accaacacttttgatgttatttgtcgtacaataatctctatatgcttattatgaatctgt 19051 Query: 381 accccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttgggct 440 ||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| Sbjct: 19052 accccctgggatcgataaaccttttggatcttattaaccaaagaaacacgactttgcgct 19111 Query: 441 atggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtatacgc 500 ||||| || ||||| ||||||| |||||||||||| | |||||||| | || |||| | Sbjct: 19112 atggtgagttcagcaccaatcaggaatccccaaggaattccaagaatgcctgttatatgt 19171 Query: 501 tcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacgcgct 560 || |||||| | |||| || |||| || || |||| ||||||||| ||||| || Sbjct: 19172 tcgttccaaccttcaacccttttttctaggttcatcgatattgaatcaatcgaacgaact 19231 Query: 561 tcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatttttca 620 || || | |||||| || |||||||| || || ||||| |||| |||||||||||||||| Sbjct: 19232 tctaacacttgttcaacctttggaaggccgtgagttatatcaccagatctcgatttttca 19291 Query: 621 tatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccattaaca 680 |||||||| |||||||| ||||||| | ||||| |||||||||||||| ||||| ||| Sbjct: 19292 tatataaatgtaactaatgtatctccttcgtaaaagatttctccataatcaccatgaacg 19351 Query: 681 gttgctcct 689 ||||||||| Sbjct: 19352 gttgctcct 19360
>gb|AC146587.20| Medicago truncatula clone mth2-144j8, complete sequence Length = 113373 Score = 410 bits (207), Expect = e-111 Identities = 485/580 (83%) Strand = Plus / Minus Query: 91 ctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttctt 150 |||||||||||||||| ||||| || || || |||||||||||||||| ||||||||||| Sbjct: 23975 ctttcaaccaatcaatacgaccccgaagagcggcttttgctaaaactctagcagtttctt 23916 Query: 151 gaaaacttgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaata 210 ||||||| ||||| |||||||||||||| |||||||| || | ||||||||||||||| Sbjct: 23915 gaaaactcgcttcggatatgaaactttgagtattcagagatgtttttgttattcccaata 23856 Query: 211 agattgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaata 270 | | || || ||| | || | ||| ||||| || ||||| | |||||| |||||||||| Sbjct: 23855 ataaagctcggtaacaaattgcttcttccaaggcacgcccagttcgttctgctcgcaata 23796 Query: 271 gtccgattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgcactt 330 ||| |||||||| ||||| ||||| ||||||||||||| || ||| |||| Sbjct: 23795 atccaattaattcaccaggtaaaaatacattaaacattccatcttctgagaccaagactt 23736 Query: 331 ttgatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttggg 390 | ||||| | ||| || | |||||| || ||||||||||||||||| ||||| || |||| Sbjct: 23735 tggatgtcatttgacgcacaataatttcgatatgtctattatggatgtgtactccctggg 23676 Query: 391 atcgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttagct 450 |||||||||||||||||||||||||||||||||||||||||||||| || || ||||||| Sbjct: 23675 atcgataaaccttttggattttattaaccaaagaaatacgactttgcgcgatagttagct 23616 Query: 451 cagctccaatcaagaatccccaagggaccccaagaattcttggtatacgctcattccaat 510 |||| |||||||||||||||||||| | || |||||||||| ||||| |||||||||| Sbjct: 23615 cagcaccaatcaagaatccccaaggaatgccgagaattcttgttatacactcattccaag 23556 Query: 511 cctcaattctcctttcgagattgggggataatgaatcaattgaacgcgcttcaaagattt 570 | || |||| |||||||||| |||| ||||||||| ||||| ||| || |||| Sbjct: 23555 catcgattcctttttcgagattcatcgatattgaatcaatcgaacgtatttctaatattt 23496 Query: 571 gttccacttttggaagaccttgcgttatgtcactagatctcgatttttcatatataaacg 630 |||||||||||||||||||||| ||||| |||| |||||||||||||||||||| || | Sbjct: 23495 gttccacttttggaagaccttgtgttatatcaccggatctcgatttttcatatatgaatg 23436 Query: 631 taactaacctatctcccttgtaaaggatttctccataatg 670 ||||||| ||||||| | |||||||||||||||||||| Sbjct: 23435 taactaaaatatctccttgataaaggatttctccataatg 23396
>dbj|AB189069.1| Silene latifolia chloroplast DNA, partial sequence, rpoB gene to rps7 gene region Length = 47249 Score = 410 bits (207), Expect = e-111 Identities = 512/616 (83%) Strand = Plus / Minus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||||||||| || ||||||||||||||||| || ||||| || ||||||||||||||| Sbjct: 11207 acgttttcttttaatcctttcaaccaatcaatacggcctcggagagcagcttttgctaaa 11148 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcc 194 ||||||||||||||||||||||||||||| ||||| |||||||| |||||||| || || Sbjct: 11147 actcgagcagtttcttgaaaacttgcttcggatataaaactttgagtattcagagatgct 11088 Query: 195 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 254 || ||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | | Sbjct: 11087 ctcgttattcccaataagatcgttcggtaacagatcgcttcttccaaagcgcgccccgtt 11028 Query: 255 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 314 ||||| ||||| || | ||| || | ||| || ||| ||||||||||||||| Sbjct: 11027 cgttctgctcgaaacaatccaatgagttctccgggcaaaaaaatattagacattccatcc 10968 Query: 315 tcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgg 374 || |||||| ||||| ||||||| ||| |||| |||||| || ||||| | || ||| Sbjct: 10967 tctgaaaccaagactttagatgttatttgccgtacaataatttcgatatgccgatcatga 10908 Query: 375 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 434 ||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct: 10907 atctgcaccccctgggatcgataaaccttttggatcttattaaccaaagagatacgactt 10848 Query: 435 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 494 || ||||| ||||||||||| |||| |||||||||||| || | ||||||||| || | Sbjct: 10847 tgcgctatagttagctcagccccaaccaagaatccccacggaattccaagaatttttttt 10788 Query: 495 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 554 ||||| || |||||| | | ||| ||| |||||||||| ||||| ||| |||| ||| Sbjct: 10787 atacgttcgttccaaccattaatcctcttttcgagattcatggatattgactcaaccgaa 10728 Query: 555 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 614 || |||| |||| ||||||||||||||| |||||||||||||| |||| ||| |||||| Sbjct: 10727 cgaacttctaagacttgttccacttttggcagaccttgcgttatatcaccagacctcgat 10668 Query: 615 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 674 |||||||||||||| ||||||| |||| || | |||| ||||||||||||||| ||| Sbjct: 10667 ttttcatatataaatgtaactagggtatccccttcataaatgatttctccataatgccca 10608 Query: 675 ttaacagttgctcctg 690 | ||| |||||||||| Sbjct: 10607 tgaactgttgctcctg 10592
>gb|AC145457.1| Cicer arietinum strain FLIP84-92C clone gl1-40c9, complete sequence Length = 23359 Score = 400 bits (202), Expect = e-108 Identities = 498/599 (83%) Strand = Plus / Plus Query: 90 cctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttct 149 ||||||||||||||||| ||||| || || || |||||||||||||||| |||||||||| Sbjct: 618 cctttcaaccaatcaatacgaccccgaagagcggcttttgctaaaactctagcagtttct 677 Query: 150 tgaaaacttgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaat 209 |||||||| ||||| |||||||||||||| ||||| || || | |||||||||||||| Sbjct: 678 tgaaaactcgcttcggatatgaaactttgagtatttagagatgtttttgttattcccaat 737 Query: 210 aagattgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaat 269 || | || || ||| | || | ||| ||||| || ||||| | |||||| ||||||||| Sbjct: 738 aataaagctcggtaacaaattgcttcttccaatgcacgccccgttcgttctgctcgcaat 797 Query: 270 agtccgattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgcact 329 | ||| || | |||||| || ||||||||||||||||||| |||||| ||| Sbjct: 798 aatccaatgagttccccgggtaaaaatacattagacattccatcttccgaaaccaatact 857 Query: 330 tttgatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgg 389 || ||||||| ||| || | |||||| || ||||||||||||||||| ||||| || ||| Sbjct: 858 ttggatgttatttgacgcacaataatttcgatatgtctattatggatgtgtactccctgg 917 Query: 390 gatcgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttagc 449 ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||| Sbjct: 918 gatcgataaaccttttgtattttattaaccaaagaaatgcgactttgcgctatagttagc 977 Query: 450 tcagctccaatcaagaatccccaagggaccccaagaattcttggtatacgctcattccaa 509 ||||| |||||||||||||||||||| | || |||||||||||||||| ||| |||||| Sbjct: 978 tcagcaccaatcaagaatccccaaggaataccgagaattcttggtatacactcgttccaa 1037 Query: 510 tcctcaattctcctttcgagattgggggataatgaatcaattgaacgcgcttcaaagatt 569 | ||||||| |||| ||||| |||| ||||||||| ||||| ||| || || Sbjct: 1038 gcatcaattcgtttttctagattcatcgatattgaatcaatcgaacgtatttctaatatc 1097 Query: 570 tgttccacttttggaagaccttgcgttatgtcactagatctcgatttttcatatataaac 629 ||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| Sbjct: 1098 tgttccacttttggaagaccttgtgttatatcaccggatctcgatttttcatatataaat 1157 Query: 630 gtaactaacctatctcccttgtaaaggatttctccataatgaccattaacagttgctcc 688 |||||||| ||||||| | | |||||||||||||||||| |||| || |||||||| Sbjct: 1158 gtaactaaaatatctccttcatcaaggatttctccataatggccatgaatggttgctcc 1216
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 379 bits (191), Expect = e-102 Identities = 505/612 (82%) Strand = Plus / Minus Query: 77 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 136 ||||||||| | |||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 44506 gttttcttttagacctttcaaccaatcgatacgacctcggagagcggcttttgctaaaac 44447 Query: 137 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccct 196 || |||||||||||||||||||||||| |||||||||||||| |||||||| || | | Sbjct: 44446 tctagcagtttcttgaaaacttgcttcggatatgaaactttgagtattcagagatgtttt 44387 Query: 197 tgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcg 256 ||||||||||||||| | | || ||| | || ||||| ||||| || ||||||| ||| Sbjct: 44386 tgttattcccaataatagagttcggtaacaaatagattcttccaaggcgcgccctgttcg 44327 Query: 257 ttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttc 316 || ||||| || | ||| |||| |||||| || |||| |||||||||||||| Sbjct: 44326 ttgagctcgtaacaatccaattagttcccccggtgaaaatacattcgacattccatcttc 44267 Query: 317 ggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatggat 376 || ||| ||||||||||||| ||| || | |||||| || ||||||||||||||||| Sbjct: 44266 tgacaccaagacttttgatgttatttgacgaacaataatttcgatatgtctattatggat 44207 Query: 377 ctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttg 436 || || || |||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct: 44206 gtgcactccctgggatcgataaactctttggattttattcaccaaagaaatacgactttg 44147 Query: 437 ggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtat 496 ||||| ||||||||||| ||||||||||||| |||||| | || ||||||| || ||| Sbjct: 44146 agctatagttagctcagcaccaatcaagaatctccaaggaatgcccagaattcctgttat 44087 Query: 497 acgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacg 556 ||| || |||||| | ||||||||| |||| || || |||| ||||||||| ||||| Sbjct: 44086 acgttcgttccaagcatcaattctcttttctaggttcattgatattgaatcaatcgaacg 44027 Query: 557 cgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgattt 616 |||| || | ||||| ||||||||||||||||| ||||| |||| |||||||||||| Sbjct: 44026 tacttctaatacctgttctacttttggaagaccttgtgttatatcaccagatctcgattt 43967 Query: 617 ttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccatt 676 |||||||||||| |||||||| ||||||| | ||||| |||||||||||||| |||| Sbjct: 43966 ttcatatataaatgtaactaatatatctccttcataaagcatttctccataatgtccatg 43907 Query: 677 aacagttgctcc 688 || ||||||||| Sbjct: 43906 aatagttgctcc 43895
>emb|X03912.1|CHPSATPA Pea chloroplast DNA (4.7 kb) 5' to ATP-synthase a subunit gene Length = 4680 Score = 375 bits (189), Expect = e-100 Identities = 503/610 (82%) Strand = Plus / Minus Query: 90 cctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttct 149 ||||||||||||||||| ||||| || || || |||||||||||||||| |||||||||| Sbjct: 3300 cctttcaaccaatcaatacgaccccgaagagcggcttttgctaaaactctagcagtttct 3241 Query: 150 tgaaaacttgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaat 209 |||||||| ||||| |||||||||||||| |||||||| || | |||||| ||||||| Sbjct: 3240 tgaaaactcgcttcggatatgaaactttgagtattcagagatgtttttgttactcccaat 3181 Query: 210 aagattgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaat 269 || | || | ||| | || | ||| ||||| || ||||| | |||||| ||||||||| Sbjct: 3180 aataaagctctgtaacaaattgcttcttccaaggcacgccccgttcgttctgctcgcaat 3121 Query: 270 agtccgattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgcact 329 | ||| |||| ||| ||||| |||||||||||||||||| |||||| ||| Sbjct: 3120 aatccaattagttcgccaggtaaaaatatattagacattccatcttctgaaaccaagact 3061 Query: 330 tttgatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgg 389 || ||||||| ||| || | ||||||||| ||||||||||||||||| ||||| || ||| Sbjct: 3060 ttggatgttatttgacgcacaataatctcgatatgtctattatggatgtgtactccctgg 3001 Query: 390 gatcgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttagc 449 ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct: 3000 gatcgataaaccttttggattttattaaccaaagaaatacgactttgcgcgatagttagc 2941 Query: 450 tcagctccaatcaagaatccccaagggaccccaagaattcttggtatacgctcattccaa 509 ||||| |||||||||||||||||||| | || | |||| ||| ||||| ||| |||||| Sbjct: 2940 tcagcaccaatcaagaatccccaaggaatgccgataatttttgttatacactcgttccaa 2881 Query: 510 tcctcaattctcctttcgagattgggggataatgaatcaattgaacgcgcttcaaagatt 569 | |||||||| |||| ||||| ||||| ||||||||| ||||| ||| || || Sbjct: 2880 gcatcaattcttttttctagattcatggatattgaatcaatcgaacgtatttctaatatc 2821 Query: 570 tgttccacttttggaagaccttgcgttatgtcactagatctcgatttttcatatataaac 629 ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| || Sbjct: 2820 tgttccacttttggaagaccttgtgttatatcaccggatctcgatttttcatatatgaat 2761 Query: 630 gtaactaacctatctcccttgtaaaggatttctccataatgaccattaacagttgctcct 689 |||||||| ||||||| | ||||||| || |||||||| || | || ||||||||| Sbjct: 2760 gtaactaaaatatctccttgagaaaggatctccccataatggccgtgaatggttgctcct 2701 Query: 690 gtagtggcca 699 | ||| |||| Sbjct: 2700 ggagttgcca 2691
>emb|AJ243754.2|SAL243754 Sinapis alba chloroplast rpoB operon (rpoB, rpoC1 and rpoC2 genes) Length = 11206 Score = 369 bits (186), Expect = 8e-99 Identities = 503/611 (82%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 |||||||||| ||||||||||||||| || ||||| || || |||||||||||||||||| Sbjct: 10835 ttttctttcaggcctttcaaccaatcgatacgaccccgaagagcagcttttgctaaaact 10776 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 197 |||||||||||||||||||||||||| ||||| |||||||| ||||||| || || | Sbjct: 10775 cgagcagtttcttgaaaacttgcttcggatataaaactttgagtattcaaagatgctcga 10716 Query: 198 gttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgt 257 |||||||| ||||| | || |||||| |||| | ||| || ||||| ||||| | ||| Sbjct: 10715 gttattcctaataaaacggctcgataacagattgcttcttctaaagcacgccccgtgcgt 10656 Query: 258 tccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttcg 317 || ||||| || | ||| || ||||| ||||| ||||||||||||| ||||| Sbjct: 10655 tctgctcgtaacaatccaatcaattctccaggtaaaaaaacattagacattccctcttct 10596 Query: 318 gaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatggatc 377 |||||| ||||||||||||| ||| |||| |||||| || ||||| |||||||| ||| Sbjct: 10595 gaaaccaaaacttttgatgttatttgacgtacaataatttcgatatgcctattatgaatc 10536 Query: 378 tgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttgg 437 || ||||| ||||||| |||||||| || ||| |||||||||||||||||||||||||| Sbjct: 10535 tgcaccccctgggatctataaacctgtttgatcttattaaccaaagaaatacgactttgc 10476 Query: 438 gctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtata 497 |||| ||||||||||| |||||||||||||||||||| | ||||||||||||| |||| Sbjct: 10475 actatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgttata 10416 Query: 498 cgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacgc 557 | | |||||| ||| ||| | | |||| | || | |||| ||||||||| || ||| Sbjct: 10415 cacctgttccaacccttaatccgcttttctaagttcagcgatattgaatcaatcgagcgc 10356 Query: 558 gcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatttt 617 |||| || | ||||| ||||||||||||||||| ||||| |||| |||||||||||| Sbjct: 10355 acttctaacacctgttcgacttttggaagaccttgtgttatatcaccggatctcgatttt 10296 Query: 618 tcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccatta 677 ||||||||||| |||||||| ||||||||| |||||| ||||||| |||||| |||| | Sbjct: 10295 tcatatataaatgtaactaatgtatctccctcgtaaagaatttctctataatgcccatga 10236 Query: 678 acagttgctcc 688 || ||||||| Sbjct: 10235 acttttgctcc 10225
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 363 bits (183), Expect = 5e-97 Identities = 464/560 (82%) Strand = Plus / Plus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 |||||||||| ||||||||||||||| || ||||| || || |||||||||||||||||| Sbjct: 16140 ttttctttcaggcctttcaaccaatcgatacgaccccgaagagcagcttttgctaaaact 16199 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 197 |||||||||||||||||||||||||| ||||| |||||||| ||||||| || || | Sbjct: 16200 cgagcagtttcttgaaaacttgcttcggatataaaactttgagtattcaaagatgctcga 16259 Query: 198 gttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgt 257 |||||||| ||||| | || |||||| |||| | ||| || ||||| ||||| | |||| Sbjct: 16260 gttattcctaataaaacggctcgataacagattgcttcttctaaagcacgccccgttcgt 16319 Query: 258 tccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttcg 317 || ||||| |||| ||| || | ||| ||||| ||||||||||||| |||||| Sbjct: 16320 tctgctcgtaataatccaataagttctccaggtaaaaaaacattagacattccctcttcg 16379 Query: 318 gaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatggatc 377 |||||| ||||||||||||| ||| |||| |||||| || ||||| |||||||| ||| Sbjct: 16380 gaaaccaaaacttttgatgttatttgacgtacaataatttcgatatgcctattatgaatc 16439 Query: 378 tgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttgg 437 || ||||| |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 16440 tgcaccccctgggatcgataaaccttttgaatcttattaaccaaagaaatacgactttgc 16499 Query: 438 gctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtata 497 |||| |||| |||||| |||||||||||||||||||| | ||||||||||||| |||| Sbjct: 16500 actatagttaactcagcaccaatcaagaatccccaaggaattccaagaattcttgttata 16559 Query: 498 cgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacgc 557 | || |||||| ||| ||| | | |||| | || |||| ||||||||| || || Sbjct: 16560 cacttgttccaacccttaatccgcttttctaagttcaacgatattgaatcaatcgagcgg 16619 Query: 558 gcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatttt 617 |||| || | |||||| ||||||||||||||||| ||||| |||| |||||||||||| Sbjct: 16620 acttctaaaacttgttctacttttggaagaccttgggttatatcaccggatctcgatttt 16679 Query: 618 tcatatataaacgtaactaa 637 ||||||||||| |||||||| Sbjct: 16680 tcatatataaatgtaactaa 16699
>gb|DQ069544.1| Ranunculus macranthus RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4128 Score = 357 bits (180), Expect = 3e-95 Identities = 365/429 (85%) Strand = Plus / Minus Query: 81 tctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcga 140 ||||||| ||||||||||||||||| |||||||||| || |||||||||||||||| | Sbjct: 3932 tctttcagtcctttcaaccaatcaatacgacctcgtaaagcggcttttgctaaaactcta 3873 Query: 141 gcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcccttgtt 200 ||||||||||||||||| |||||||||||||||||||| |||||||| || ||||| ||| Sbjct: 3872 gcagtttcttgaaaactcgcttcagatatgaaactttgagtattcagagatgccctcgtt 3813 Query: 201 attcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgttcc 260 ||||| ||||| | || || ||| |||||| ||| |||||||| ||||| | ||||||| Sbjct: 3812 attcctaataaaacggctcggtaacagatcgcttcttccaaagcgcgccccgttcgttcc 3753 Query: 261 gctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttcggaa 320 || | ||| | ||| |||||||| || || ||||||||||||||||||| ||| Sbjct: 3752 gccctcaacaatccaattaattcaccgggtgaaaaaacattagacattccatcttctgaa 3693 Query: 321 acccgcacttttgatgttacttggcgtataataatctctatatgtctattatggatctgt 380 ||| |||||||||||||| ||| |||| |||||| |||||||| |||||||| ||||| Sbjct: 3692 accaacacttttgatgttatttgacgtacaataatttctatatgcctattatgtatctgc 3633 Query: 381 accccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttgggct 440 || || || || |||||||||||||| || |||||||||||||| ||||||||||| ||| Sbjct: 3632 acgccctgcgagcgataaaccttttgaatcttattaaccaaagatatacgactttgtgct 3573 Query: 441 atggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtatacgc 500 |||||||||||||| |||||||||||||||||||| | ||||||| |||||| |||||| Sbjct: 3572 atggttagctcagcgccaatcaagaatccccaaggaatcccaagagttcttgttatacgt 3513 Query: 501 tcattccaa 509 || |||||| Sbjct: 3512 tcgttccaa 3504 Score = 149 bits (75), Expect = 1e-32 Identities = 141/163 (86%) Strand = Plus / Minus Query: 537 gataatgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgtt 596 |||| ||||||||| ||||| |||| || | |||||| ||||||||||||||||||||| Sbjct: 3476 gatattgaatcaatcgaacgaacttctaacacttgttctacttttggaagaccttgcgtt 3417 Query: 597 atgtcactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaagg 656 || |||| ||||||||||||||||||||||| |||||||| ||||||| | ||||||| Sbjct: 3416 atatcacccgatctcgatttttcatatataaatgtaactaatgtatctccttcgtaaagg 3357 Query: 657 atttctccataatgaccattaacagttgctcctgtagtggcca 699 ||||| |||||||| |||| ||| |||||||||| ||| |||| Sbjct: 3356 atttccccataatggccatgaacggttgctcctggagtagcca 3314
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 349 bits (176), Expect = 8e-93 Identities = 487/593 (82%) Strand = Plus / Plus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 |||||||||| ||||||||||||||| || ||||| || || |||||||||||||||||| Sbjct: 15774 ttttctttcaggcctttcaaccaatcgatacgaccccgaagagcagcttttgctaaaact 15833 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 197 | |||||||||||||||||||||||| ||||| |||||||| ||||||| || || | Sbjct: 15834 ctagcagtttcttgaaaacttgcttcggatataaaactttgagtattcaaagatgctcga 15893 Query: 198 gttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgt 257 |||||||| ||||| | || |||||| |||| | ||| || ||||| ||||| | ||| Sbjct: 15894 gttattcctaataaaacggctcgataacagattgcttcttctaaagcacgccccgtgcgt 15953 Query: 258 tccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttcg 317 || ||||| || | ||| || ||||| ||||| ||||||||||||| ||||| Sbjct: 15954 tctgctcgtaacaatccaatcaattctccaggtaaaaaaacattagacattccctcttct 16013 Query: 318 gaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatggatc 377 |||||| ||||||||||||| ||| |||| |||||| || ||||| |||||||| ||| Sbjct: 16014 gaaaccaaaacttttgatgttatttgacgtacaataatttcgatatgcctattatgaatc 16073 Query: 378 tgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttgg 437 || ||||| |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 16074 tgcaccccctgggatcgataaaccttttgaatcttattaaccaaagaaatacgactttgc 16133 Query: 438 gctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtata 497 |||| ||||||||||| |||||||||||||||||||| | ||||||||||||| |||| Sbjct: 16134 actatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgttata 16193 Query: 498 cgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacgc 557 | | |||||| ||| ||| | | |||| | || | |||| ||||||||| || || Sbjct: 16194 cacctgttccaacccttaatccgcttttctaagttcagtgatattgaatcaatcgagcgg 16253 Query: 558 gcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatttt 617 |||| || | ||||| ||||||||||||||||| ||||| |||| |||||||||||| Sbjct: 16254 acttctaacacctgttctacttttggaagaccttgggttatatcaccggatctcgatttt 16313 Query: 618 tcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatg 670 ||||||||||| |||||||| |||| || | |||||| ||||||| |||||| Sbjct: 16314 tcatatataaatgtaactaatgtatccccttcgtaaagaatttctctataatg 16366
>gb|AF289093.1| Glycine max chloroplast rpoBC gene cluster, complete sequence Length = 12968 Score = 297 bits (150), Expect = 3e-77 Identities = 368/443 (83%) Strand = Plus / Minus Query: 246 cgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagac 305 |||||||||||||| |||||||| | ||| |||| ||| || ||| |||||||| Sbjct: 11558 cgccctgctcgttcggctcgcaacaatccaattagttcaccgggcaaaaaaacattagac 11499 Query: 306 attccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgt 365 |||||||||||||||||| ||||||||||||| ||| || | |||||| ||||||||| Sbjct: 11498 attccatcttcggaaaccaagacttttgatgttatttgacgcacaataatttctatatgt 11439 Query: 366 ctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaa 425 |||||||| || || || || |||||||||||||| ||||| |||||||||||||||||| Sbjct: 11438 ctattatgaatgtgaactccctgggatcgataaactttttgaattttattaaccaaagaa 11379 Query: 426 atacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaaga 485 ||||||||||| ||||| ||||||||||| |||||||||||||||||||| | |||||| Sbjct: 11378 atacgactttgcgctatcgttagctcagcaccaatcaagaatccccaaggaatgccaaga 11319 Query: 486 attcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataatgaa 545 ||| ||| ||||||| |||||||| |||| |||| |||| || || |||| |||| Sbjct: 11318 atttttgttatacgcccattccaagtatcaactctcttttctaggttcatcgatattgaa 11259 Query: 546 tcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcacta 605 ||||| ||||| |||| || | ||||| ||||||||||||||||| ||||| |||| Sbjct: 11258 tcaatcgaacgaacttctaatacctgttctacttttggaagaccttgtgttatatcaccc 11199 Query: 606 gatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggatttctcca 665 ||||||||||||||||| ||||| |||||||| ||||||| | |||| ||||| ||| Sbjct: 11198 gatctcgatttttcatagataaatgtaactaatatatctccttcagaaagtatttcccca 11139 Query: 666 taatgaccattaacagttgctcc 688 ||||| |||| ||| |||||||| Sbjct: 11138 taatggccatgaaccgttgctcc 11116 Score = 129 bits (65), Expect = 1e-26 Identities = 101/113 (89%) Strand = Plus / Minus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||||| |||||||||||||| ||||| || || || || ||||||| |||| Sbjct: 11729 acgttctctttcagacctttcaaccaatctatgcgcccccggagagcggcttttgataaa 11670 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcag 187 |||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 11669 actctagcagtttcttgaaaacttgcttcagatatgaaactttgagtattcag 11617
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 297 bits (150), Expect = 3e-77 Identities = 368/443 (83%) Strand = Plus / Minus Query: 246 cgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagac 305 |||||||||||||| |||||||| | ||| |||| ||| || ||| |||||||| Sbjct: 44350 cgccctgctcgttcggctcgcaacaatccaattagttcaccgggcaaaaaaacattagac 44291 Query: 306 attccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgt 365 |||||||||||||||||| ||||||||||||| ||| || | |||||| ||||||||| Sbjct: 44290 attccatcttcggaaaccaagacttttgatgttatttgacgcacaataatttctatatgt 44231 Query: 366 ctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaa 425 |||||||| || || || || |||||||||||||| ||||| |||||||||||||||||| Sbjct: 44230 ctattatgaatgtgaactccctgggatcgataaactttttgaattttattaaccaaagaa 44171 Query: 426 atacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaaga 485 ||||||||||| ||||| ||||||||||| |||||||||||||||||||| | |||||| Sbjct: 44170 atacgactttgcgctatcgttagctcagcaccaatcaagaatccccaaggaatgccaaga 44111 Query: 486 attcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataatgaa 545 ||| ||| ||||||| |||||||| |||| |||| |||| || || |||| |||| Sbjct: 44110 atttttgttatacgcccattccaagtatcaactctcttttctaggttcatcgatattgaa 44051 Query: 546 tcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcacta 605 ||||| ||||| |||| || | ||||| ||||||||||||||||| ||||| |||| Sbjct: 44050 tcaatcgaacgaacttctaatacctgttctacttttggaagaccttgtgttatatcaccc 43991 Query: 606 gatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggatttctcca 665 ||||||||||||||||| ||||| |||||||| ||||||| | |||| ||||| ||| Sbjct: 43990 gatctcgatttttcatagataaatgtaactaatatatctccttcagaaagtatttcccca 43931 Query: 666 taatgaccattaacagttgctcc 688 ||||| |||| ||| |||||||| Sbjct: 43930 taatggccatgaaccgttgctcc 43908 Score = 129 bits (65), Expect = 1e-26 Identities = 101/113 (89%) Strand = Plus / Minus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||| ||||||| |||||||||||||| ||||| || || || || ||||||| |||| Sbjct: 44521 acgttctctttcagacctttcaaccaatctatgcgcccccggagagcggcttttgataaa 44462 Query: 135 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcag 187 |||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 44461 actctagcagtttcttgaaaacttgcttcagatatgaaactttgagtattcag 44409
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 291 bits (147), Expect = 2e-75 Identities = 330/391 (84%) Strand = Plus / Plus Query: 298 cattagacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatct 357 ||||||||||||||||||| |||||| ||||||||||||| ||| |||| |||| | | Sbjct: 20407 cattagacattccatcttctgaaaccaagacttttgatgttatttgtcgtacaatagttt 20466 Query: 358 ctatatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaa 417 ||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct: 20467 ctatatgcctattatggatctgcaccccctgggatcgataaaccttttggatcttattaa 20526 Query: 418 ccaaagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaaggga 477 ||||||| ||||||||||| |||||||||||| ||| | ||| |||||| |||| || | Sbjct: 20527 ccaaagagatacgactttgcactatggttagctgagcactaataaagaattcccagggaa 20586 Query: 478 ccccaagaattcttggtatacgctcattccaatcctcaattctcctttcgagattggggg 537 ||||||| || || ||| || || ||||| | |||| ||| |||| || || | Sbjct: 20587 ttccaagaaatcctgttatgcgttcgttccagccttcaaccctcttttctaggttcatcg 20646 Query: 538 ataatgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgtta 597 ||| ||||||||| ||||| |||| || | |||||| ||||||||||||||||| |||| Sbjct: 20647 atattgaatcaatcgaacgaacttctaacacttgttcaacttttggaagaccttgagtta 20706 Query: 598 tgtcactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaagga 657 | |||| |||||| ||||||||||||||||| |||||||| ||||||||| |||||||| Sbjct: 20707 tatcaccagatcttgatttttcatatataaaagtaactaatgtatctccctcgtaaagga 20766 Query: 658 tttctccataatgaccattaacagttgctcc 688 |||||||||||||||||| ||| |||||||| Sbjct: 20767 tttctccataatgaccatgaacggttgctcc 20797 Score = 131 bits (66), Expect = 3e-27 Identities = 114/130 (87%) Strand = Plus / Plus Query: 81 tctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcga 140 ||||||| |||||||||||||||||| |||| ||| || || ||||| |||||||| ||| Sbjct: 20190 tctttcaggcctttcaaccaatcaatacgacttcggagagcggctttcgctaaaacccga 20249 Query: 141 gcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagcccttgtt 200 | |||||||||||||| ||||| |||||||||||||| |||||||| || ||||| ||| Sbjct: 20250 gtggtttcttgaaaactcgcttctgatatgaaactttgagtattcagagatgccctcgtt 20309 Query: 201 attcccaata 210 |||||||||| Sbjct: 20310 attcccaata 20319
>dbj|AB098212.1| Nicotiana sylvestris rpoC2 gene for RNA polymerase beta'' subunit, partial cds Length = 336 Score = 240 bits (121), Expect = 5e-60 Identities = 276/330 (83%) Strand = Plus / Minus Query: 95 caaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttcttgaaa 154 ||||||||| || ||||| || || || |||||||||||||||||||||||||||||||| Sbjct: 336 caaccaatcgatacgaccccggagagccgcttttgctaaaactcgagcagtttcttgaaa 277 Query: 155 acttgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaataagat 214 ||| |||||||||||||||||||| ||||| || || || ||||||||||||||||||| Sbjct: 276 actcgcttcagatatgaaactttgagtattgagagatgctcttgttattcccaataagac 217 Query: 215 tgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaatagtcc 274 | || ||| |||||| ||| |||||||| ||||| |||||| |||||||| | ||| Sbjct: 216 gactcggtaacagatcgcttcttccaaagcgcgccccattcgttctgctcgcaacaatcc 157 Query: 275 gattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgcacttttga 334 || | ||| || || ||||||||||||||||||| |||||| ||||||||| Sbjct: 156 aataagttctccgggtgaaaaaacattagacattccatcttctgaaaccaacacttttga 97 Query: 335 tgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgggatcg 394 ||||| ||| |||| |||||| |||| ||| |||||||| ||||| ||||| ||||| || Sbjct: 96 tgttatttgacgtacaataatttctagatgcctattatgaatctgcaccccctgggagcg 37 Query: 395 ataaaccttttggattttattaaccaaaga 424 |||||||| ||||||||||||||||||||| Sbjct: 36 ataaacctgttggattttattaaccaaaga 7
>dbj|AB098233.1| Nicotiana tomentosiformis rpoC2 gene for RNA polymerase beta'' subunit, partial cds Length = 329 Score = 232 bits (117), Expect = 1e-57 Identities = 254/302 (84%) Strand = Plus / Minus Query: 123 gcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggta 182 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct: 305 gcttttgctaaaactcgagcagtctcttgaaaactcgcttcagatatgaaactttgagta 246 Query: 183 ttcagggaagcccttgttattcccaataagattgcccgataatagatcgattcatccaaa 242 || || || || ||||||||||||||||||| | || ||| |||||| ||| |||||| Sbjct: 245 ttgagagatgctcttgttattcccaataagacgactcggtaacagatcgcttcttccaaa 186 Query: 243 gctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatta 302 || ||||| |||||| |||||||| | ||| || | ||| || || ||||| Sbjct: 185 gcgcgccccattcgttctgctcgcaacaatccaataagttctccgggtgaaaaaacatta 126 Query: 303 gacattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctata 362 |||||||||||||| |||||| |||||||||||||| ||| |||| |||||| |||||| Sbjct: 125 gacattccatcttctgaaaccaacacttttgatgttatttgacgtacaataatttctata 66 Query: 363 tgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaa 422 || |||||||| ||||| ||||| ||||| |||||||||| ||||||||||||||||||| Sbjct: 65 tgcctattatgaatctgcaccccctgggagcgataaacctgttggattttattaaccaaa 6 Query: 423 ga 424 || Sbjct: 5 ga 4
>dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01N11, TM0177, complete sequence Length = 133589 Score = 190 bits (96), Expect = 4e-45 Identities = 269/329 (81%) Strand = Plus / Minus Query: 108 cgacctcgtagggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagat 167 |||||||| || || |||||||||||||||| |||||||||||||||||||||||| ||| Sbjct: 85562 cgacctcggagagcggcttttgctaaaactctagcagtttcttgaaaacttgcttcggat 85503 Query: 168 atgaaactttgggtattcagggaagcccttgttattcccaataagattgcccgataatag 227 ||||||||||| ||||||| || | |||||||||||||||| || | || ||| | Sbjct: 85502 atgaaactttgagtattcatagatgtttttgttattcccaataatatagttcggtaacaa 85443 Query: 228 atcgattcatccaaagctcgccctgctcgttccgctcgcaatagtccgattaattcccca 287 || ||||| ||||| || ||||||| ||||| ||||| || | ||| |||| |||||| Sbjct: 85442 atagattcttccaaggcacgccctgttcgttgagctcgtaacaatccaattagttccccc 85383 Query: 288 ggcnnnnnnncattagacattccatcttcggaaacccgcacttttgatgttacttggcgt 347 | |||| |||||||||||||| || ||| ||||||||||||| ||| || Sbjct: 85382 agtgaaaatacattcgacattccatcttctgacaccaagacttttgatgttatttgacga 85323 Query: 348 ataataatctctatatgtctattatggatctgtaccccttgggatcgataaaccttttgg 407 | |||||| || ||||||||||||||||| || || || |||||||||||||| ||||| Sbjct: 85322 acaataatttcgatatgtctattatggatgtgcactccctgggatcgataaactctttgg 85263 Query: 408 attttattaaccaaagaaatacgactttg 436 |||||||| |||||||||||||||||||| Sbjct: 85262 attttattcaccaaagaaatacgactttg 85234
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 182 bits (92), Expect = 1e-42 Identities = 148/166 (89%), Gaps = 3/166 (1%) Strand = Plus / Minus Query: 304 acattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatat 363 ||||||||||||| |||||| |||||||||||||||||| || | ||||||||| |||| Sbjct: 247184 acattccatcttctgaaaccaacacttttgatgttacttgacgcacaataatctcgatat 247125 Query: 364 gtctattatggatctgtaccccttgggatcgataaaccttttgga---ttttattaacca 420 ||||||||||||||||||| || ||| ||||| |||||||| ||| | || ||||||| Sbjct: 247124 gtctattatggatctgtactccctggtatcgagaaacctttaggatcttcttcttaacca 247065 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaa 466 |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 247064 aagaaatacgactttgggctatggttagctcagctccaataaagaa 247019
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 182 bits (92), Expect = 1e-42 Identities = 148/166 (89%), Gaps = 3/166 (1%) Strand = Plus / Minus Query: 304 acattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatat 363 ||||||||||||| |||||| |||||||||||||||||| || | ||||||||| |||| Sbjct: 246366 acattccatcttctgaaaccaacacttttgatgttacttgacgcacaataatctcgatat 246307 Query: 364 gtctattatggatctgtaccccttgggatcgataaaccttttgga---ttttattaacca 420 ||||||||||||||||||| || ||| ||||| |||||||| ||| | || ||||||| Sbjct: 246306 gtctattatggatctgtactccctggtatcgagaaacctttaggatcttcttcttaacca 246247 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaa 466 |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 246246 aagaaatacgactttgggctatggttagctcagctccaataaagaa 246201
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 182 bits (92), Expect = 1e-42 Identities = 148/166 (89%), Gaps = 3/166 (1%) Strand = Plus / Minus Query: 304 acattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatat 363 ||||||||||||| |||||| |||||||||||||||||| || | ||||||||| |||| Sbjct: 246363 acattccatcttctgaaaccaacacttttgatgttacttgacgcacaataatctcgatat 246304 Query: 364 gtctattatggatctgtaccccttgggatcgataaaccttttgga---ttttattaacca 420 ||||||||||||||||||| || ||| ||||| |||||||| ||| | || ||||||| Sbjct: 246303 gtctattatggatctgtactccctggtatcgagaaacctttaggatcttcttcttaacca 246244 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaa 466 |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 246243 aagaaatacgactttgggctatggttagctcagctccaataaagaa 246198
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 182 bits (92), Expect = 1e-42 Identities = 148/166 (89%), Gaps = 3/166 (1%) Strand = Plus / Minus Query: 304 acattccatcttcggaaacccgcacttttgatgttacttggcgtataataatctctatat 363 ||||||||||||| |||||| |||||||||||||||||| || | ||||||||| |||| Sbjct: 246242 acattccatcttctgaaaccaacacttttgatgttacttgacgcacaataatctcgatat 246183 Query: 364 gtctattatggatctgtaccccttgggatcgataaaccttttgga---ttttattaacca 420 ||||||||||||||||||| || ||| ||||| |||||||| ||| | || ||||||| Sbjct: 246182 gtctattatggatctgtactccctggtatcgagaaacctttaggatcttcttcttaacca 246123 Query: 421 aagaaatacgactttgggctatggttagctcagctccaatcaagaa 466 |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 246122 aagaaatacgactttgggctatggttagctcagctccaataaagaa 246077
>emb|AJ391748.1|VME391748 Vicia melanops genomic repetitive element, clone M27 Length = 509 Score = 151 bits (76), Expect = 4e-33 Identities = 219/269 (81%) Strand = Plus / Minus Query: 90 cctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttct 149 ||||||||||||||||| ||||| || || || |||||||||||||||| |||||||||| Sbjct: 271 cctttcaaccaatcaatacgaccccgaagagcggcttttgctaaaactctagcagtttct 212 Query: 150 tgaaaacttgcttcagatatgaaactttgggtattcagggaagcccttgttattcccaat 209 |||||||| ||||| |||||||||||||| |||||||| || | |||||||||||||| Sbjct: 211 tgaaaactcgcttcggatatgaaactttgagtattcagagatgtttttgttattcccaat 152 Query: 210 aagattgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaat 269 || | || || ||| | || | ||| ||||| || ||||| | |||||| ||||||||| Sbjct: 151 aaaaaagctcggtaacaaattggttcttccaaggcacgccccgttcgttctgctcgcaat 92 Query: 270 agtccgattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgcact 329 | ||| |||| ||| ||||| ||||||||||||||||||| |||||| ||| Sbjct: 91 aatccaattagttcgccaggtaaaaatacattagacattccatcttctgaaaccaagact 32 Query: 330 tttgatgttacttggcgtataataatctc 358 || ||||||| ||| || | ||||||||| Sbjct: 31 ttggatgttatttgacgcacaataatctc 3
>gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1082A06, complete sequence Length = 135774 Score = 147 bits (74), Expect = 6e-32 Identities = 107/118 (90%) Strand = Plus / Plus Query: 520 tcctttcgagattgggggataatgaatcaattgaacgcgcttcaaagatttgttccactt 579 ||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |||| Sbjct: 10739 tcctttcgagattcagcgatagtgaatcaattgaacgcgctttgaagatttgttctactt 10798 Query: 580 ttggaagaccttgcgttatgtcactagatctcgatttttcatatataaacgtaactaa 637 ||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||| Sbjct: 10799 ttggaagaccttgcgttatgtcactagatatcgctttctcgtatataaacgtaactaa 10856 Score = 83.8 bits (42), Expect = 7e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 638 cctatctcccttgtaaaggatttctccataatgaccattaacagttgctcctgtagtggc 697 |||||| || ||||||||| ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 11204 cctatcccctttgtaaaggttttgtccataatgaccatgaacagttgctcctgtagtggc 11263 Query: 698 ca 699 || Sbjct: 11264 ca 11265
>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0095C06, from Chromosome 10, complete sequence Length = 156159 Score = 147 bits (74), Expect = 6e-32 Identities = 107/118 (90%) Strand = Plus / Plus Query: 520 tcctttcgagattgggggataatgaatcaattgaacgcgcttcaaagatttgttccactt 579 ||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |||| Sbjct: 140797 tcctttcgagattcagcgatagtgaatcaattgaacgcgctttgaagatttgttctactt 140856 Query: 580 ttggaagaccttgcgttatgtcactagatctcgatttttcatatataaacgtaactaa 637 ||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||| Sbjct: 140857 ttggaagaccttgcgttatgtcactagatatcgctttctcgtatataaacgtaactaa 140914 Score = 83.8 bits (42), Expect = 7e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 638 cctatctcccttgtaaaggatttctccataatgaccattaacagttgctcctgtagtggc 697 |||||| || ||||||||| ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 141262 cctatcccctttgtaaaggttttgtccataatgaccatgaacagttgctcctgtagtggc 141321 Query: 698 ca 699 || Sbjct: 141322 ca 141323
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 147 bits (74), Expect = 6e-32 Identities = 119/134 (88%) Strand = Plus / Plus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||| |||||||||||||||||||| ||||||||| |||| |||||||| ||||| || Sbjct: 16390 ttttccttcaagcctttcaaccaatcgatgcgaccttgtagagcagctttagctaagacc 16449 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 197 |||||||||||||| ||||| ||||| ||||| |||||||| |||||||| || |||||| Sbjct: 16450 cgagcagtttcttggaaactcgcttcggatataaaactttgagtattcagagatgccctt 16509 Query: 198 gttattcccaataa 211 |||||||| ||||| Sbjct: 16510 gttattcctaataa 16523 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 379 gtaccccttgggatcgataaaccttttg 406 |||||||||||||||| ||||| ||||| Sbjct: 16691 gtaccccttgggatcggtaaactttttg 16718
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 139 bits (70), Expect = 1e-29 Identities = 118/134 (88%) Strand = Plus / Plus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||| |||||||||||||||||||| || |||||| |||| |||||||| ||||| || Sbjct: 16066 ttttccttcaagcctttcaaccaatcgatacgaccttgtagagcagctttagctaagacc 16125 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 197 |||||||||||||| ||||| ||||| ||||| |||||||| |||||||| || |||||| Sbjct: 16126 cgagcagtttcttggaaactcgcttcggatataaaactttgagtattcagagatgccctt 16185 Query: 198 gttattcccaataa 211 |||||||| ||||| Sbjct: 16186 gttattcctaataa 16199 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 640 tatctcccttgtaaaggatttctccataatgaccattaacagt 682 ||||||| |||| ||| ||||||||||||||||||| |||||| Sbjct: 16628 tatctcctttgtcaagaatttctccataatgaccatgaacagt 16670 Score = 48.1 bits (24), Expect = 0.039 Identities = 66/80 (82%) Strand = Plus / Plus Query: 327 acttttgatgttacttggcgtataataatctctatatgtctattatggatctgtacccct 386 ||||| ||||| | |||||||| ||||||||||||||| ||| | || |||||||| Sbjct: 16315 actttcgatgtcatttggcgtacaataatctctatatgcttatcaccaattcgtacccct 16374 Query: 387 tgggatcgataaaccttttg 406 |||||||| ||||| ||||| Sbjct: 16375 tgggatcggtaaactttttg 16394
>gb|DQ160111.1| Taraxacum officinale TO73-1 (To73-1) mRNA, partial cds Length = 215 Score = 131 bits (66), Expect = 3e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 570 tgttccacttttggaagaccttgcgttatgtcactagatctcgatttttcatatataaac 629 ||||||||||||||||||||||| ||||| |||| |||||| |||||| |||||||||| Sbjct: 196 tgttccacttttggaagaccttgggttatatcaccagatcttgattttccatatataaat 137 Query: 630 gtaactaacctatctcccttgtaaaggatttctccataatgaccattaacagttgctcct 689 |||||||| ||||||| | |||||||||||| |||||||| |||| ||||||||| ||| Sbjct: 136 gtaactaatgtatctccttcgtaaaggatttccccataatgtccatgaacagttgcgcct 77 Query: 690 gtagtggcca 699 | ||| |||| Sbjct: 76 ggagtagcca 67
>dbj|AP006646.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04I09, TM0269b, complete sequence Length = 66087 Score = 131 bits (66), Expect = 3e-27 Identities = 171/206 (83%) Strand = Plus / Plus Query: 483 agaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataat 542 ||||||| || |||||| || |||||| | ||||||||| |||| || || |||| | Sbjct: 51224 agaattcctgttatacgttcgttccaagcatcaattctcttttctaggttcattgatatt 51283 Query: 543 gaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtca 602 |||||||| ||||| |||| || | ||||| ||||||||||||||||| ||||| ||| Sbjct: 51284 gaatcaatcgaacgtacttctaatacctgttctacttttggaagaccttgtgttatatca 51343 Query: 603 ctagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggatttct 662 | |||||||||||||||||||||||| |||||||| ||||||| | ||||| |||||| Sbjct: 51344 ccagatctcgatttttcatatataaatgtaactaatatatctccttcataaagcatttct 51403 Query: 663 ccataatgaccattaacagttgctcc 688 |||||||| |||| || ||||||||| Sbjct: 51404 ccataatgtccatgaatagttgctcc 51429
>dbj|AP002054.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T15D2 Length = 87219 Score = 129 bits (65), Expect = 1e-26 Identities = 117/133 (87%), Gaps = 1/133 (0%) Strand = Plus / Plus Query: 366 ctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaa 425 |||||||| |||| |||||||||||||||||||||||||| || |||| |||||||||| Sbjct: 38904 ctattatgaatctacaccccttgggatcgataaaccttttgaatcttat-aaccaaagaa 38962 Query: 426 atacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaaga 485 ||||||||||| |||| |||| |||||| ||| |||||||||||||||| | |||||| Sbjct: 38963 atacgactttgcactatagttaactcagcaccactcaagaatccccaaggaattccaaga 39022 Query: 486 attcttggtatac 498 ||||||| ||||| Sbjct: 39023 attcttgttatac 39035 Score = 77.8 bits (39), Expect = 4e-11 Identities = 58/63 (92%), Gaps = 1/63 (1%) Strand = Plus / Plus Query: 124 cttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtat 183 ||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||| |||| Sbjct: 38673 ctttttctaaaactcgagcagtttattgaaaacttgcttcggatat-aaactttgagtat 38731 Query: 184 tca 186 ||| Sbjct: 38732 tca 38734 Score = 73.8 bits (37), Expect = 7e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 576 acttttggaagaccttgcgttatgtcactagatctcgatttttcatatataaacgtaact 635 |||||||||||||||| ||||| |||| ||||||||||||| ||||||||| |||||| Sbjct: 39113 acttttggaagaccttaggttatatcaccggatctcgattttttatatataaatgtaact 39172 Query: 636 aacctatctcccttgtaaaggatttctccataatgaccattaacagttgctcc 688 || |||| || | |||||| ||||| | |||||| |||| ||| ||||||| Sbjct: 39173 aatgtatccccttcgtaaagaatttcgctataatgcccatgaacttttgctcc 39225
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 125 bits (63), Expect = 2e-25 Identities = 109/124 (87%), Gaps = 4/124 (3%) Strand = Plus / Plus Query: 333 gatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgggat 392 ||||||||||||||||||||||||||||||||| |||||| ||| |||| ||||| Sbjct: 21024855 gatgttacttggcgtataataatctctatatgtttattatagattcgtacttcttgg--- 21024911 Query: 393 cgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttagctca 452 ||||||||||||| || |||||||||||||| |||||||||||||||| ||||| |||| Sbjct: 21024912 -gataaaccttttgaatcttattaaccaaagatatacgactttgggctacggttaactca 21024970 Query: 453 gctc 456 |||| Sbjct: 21024971 gctc 21024974 Score = 121 bits (61), Expect = 3e-24 Identities = 149/175 (85%), Gaps = 4/175 (2%) Strand = Plus / Minus Query: 2 ttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataatn 61 ||||||||||||| | ||| |||||| | |||| |||||||||||||||||||||||| Sbjct: 2909709 ttcttgtcttgtgagtaacagtgcacagaattttagaatccggtaccaacaggtataatc 2909650 Query: 62 nnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgt-aggg 120 || ||||||||||||||||| ||||||||| |||||||| ||||||||| | || Sbjct: 2909649 ccctc-ag-aactacgttttctttcaggcctttcaatcaatcaatacgacctcgtaaagg 2909592 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaact 175 || ||||||| |||| ||||||||||||| |||||||||| ||||||||||||| Sbjct: 2909591 tagattttgct-aaacccgagcagtttcttaaaaacttgctccagatatgaaact 2909538 Score = 81.8 bits (41), Expect = 3e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 202 ttcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgtt 258 |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct: 2909526 ttcccaataagattgctcgataatagattgattcatccaaagcctgccctgctcgtt 2909470
>dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0431A03 Length = 149500 Score = 125 bits (63), Expect = 2e-25 Identities = 109/124 (87%), Gaps = 4/124 (3%) Strand = Plus / Plus Query: 333 gatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgggat 392 ||||||||||||||||||||||||||||||||| |||||| ||| |||| ||||| Sbjct: 91030 gatgttacttggcgtataataatctctatatgtttattatagattcgtacttcttgg--- 91086 Query: 393 cgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttagctca 452 ||||||||||||| || |||||||||||||| |||||||||||||||| ||||| |||| Sbjct: 91087 -gataaaccttttgaatcttattaaccaaagatatacgactttgggctacggttaactca 91145 Query: 453 gctc 456 |||| Sbjct: 91146 gctc 91149
>gb|DQ069542.1| Ginkgo biloba RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4125 Score = 123 bits (62), Expect = 8e-25 Identities = 116/134 (86%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||| ||||||||||||||||||||||| |||||||| || |||||||| || || || Sbjct: 3902 ttttccttcaagcctttcaaccaatcaatacgacctcggagagcagctttagccaagacc 3843 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 197 ||||||||||| |||||||| ||| | ||||| |||||||| |||| ||| || ||||| Sbjct: 3842 cgagcagtttcctgaaaactcgctcctgatataaaactttgagtatccagagatgccctc 3783 Query: 198 gttattcccaataa 211 |||||||||||||| Sbjct: 3782 gttattcccaataa 3769 Score = 48.1 bits (24), Expect = 0.039 Identities = 66/80 (82%) Strand = Plus / Minus Query: 341 ttggcgtataataatctctatatgtctattatggatctgtaccccttgggatcgataaac 400 |||||||| ||||||||||||||| ||| || || | || ||||||||||| ||||| Sbjct: 3639 ttggcgtacaataatctctatatgcttatcataaattcgcactccttgggatcggtaaac 3580 Query: 401 cttttggattttattaacca 420 |||||| |||| ||| |||| Sbjct: 3579 cttttgaatttgattgacca 3560 Score = 42.1 bits (21), Expect = 2.4 Identities = 90/113 (79%) Strand = Plus / Minus Query: 569 ttgttccacttttggaagaccttgcgttatgtcactagatctcgatttttcatatataaa 628 |||||| ||||| ||||||||||| || | |||| ||| | ||| |||||||||| || Sbjct: 3411 ttgttcaactttaggaagaccttgaattgtatcaccggatttggatctttcatatatcaa 3352 Query: 629 cgtaactaacctatctcccttgtaaaggatttctccataatgaccattaacag 681 || | ||| ||||||| | || ||| | ||||||||||||||||| ||||| Sbjct: 3351 tgttatcaacgtatctccttcgtcaagaaattctccataatgaccatgaacag 3299
>dbj|AP004461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0443G08 Length = 162139 Score = 121 bits (61), Expect = 3e-24 Identities = 149/175 (85%), Gaps = 4/175 (2%) Strand = Plus / Minus Query: 2 ttcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtataatn 61 ||||||||||||| | ||| |||||| | |||| |||||||||||||||||||||||| Sbjct: 82771 ttcttgtcttgtgagtaacagtgcacagaattttagaatccggtaccaacaggtataatc 82712 Query: 62 nnnnnnagnaactacgttttctttcaagcctttcaaccaatcaatgcgacctcgt-aggg 120 || ||||||||||||||||| ||||||||| |||||||| ||||||||| | || Sbjct: 82711 ccctc-ag-aactacgttttctttcaggcctttcaatcaatcaatacgacctcgtaaagg 82654 Query: 121 cagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaact 175 || ||||||| |||| ||||||||||||| |||||||||| ||||||||||||| Sbjct: 82653 tagattttgct-aaacccgagcagtttcttaaaaacttgctccagatatgaaact 82600 Score = 81.8 bits (41), Expect = 3e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 202 ttcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgtt 258 |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct: 82588 ttcccaataagattgctcgataatagattgattcatccaaagcctgccctgctcgtt 82532
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 119 bits (60), Expect = 1e-23 Identities = 63/64 (98%) Strand = Plus / Plus Query: 119 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 178 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 5782214 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcatatatgaaactttg 5782273 Query: 179 ggta 182 |||| Sbjct: 5782274 ggta 5782277
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0021B21, from chromosome 3, complete sequence Length = 139208 Score = 119 bits (60), Expect = 1e-23 Identities = 63/64 (98%) Strand = Plus / Plus Query: 119 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 178 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 11044 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcatatatgaaactttg 11103 Query: 179 ggta 182 |||| Sbjct: 11104 ggta 11107
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0021B21, from chromosome 3, complete sequence Length = 166777 Score = 119 bits (60), Expect = 1e-23 Identities = 63/64 (98%) Strand = Plus / Minus Query: 119 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 178 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 48957 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcatatatgaaactttg 48898 Query: 179 ggta 182 |||| Sbjct: 48897 ggta 48894
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 119 bits (60), Expect = 1e-23 Identities = 63/64 (98%) Strand = Plus / Plus Query: 119 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 178 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 5781427 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcatatatgaaactttg 5781486 Query: 179 ggta 182 |||| Sbjct: 5781487 ggta 5781490
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 117 bits (59), Expect = 5e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 |||||||| || ||||||| ||||||||| |||||||||| || ||||||||||||||| Sbjct: 67817 ttttcttttaaacctttcagccaatcaattcgacctcgtaatgctgcttttgctaaaact 67876 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtatt 184 |||| ||||||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 67877 cgagtagtttcttgaaaactagcttcggatataaaactttgagtatt 67923
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 101 bits (51), Expect = 3e-18 Identities = 81/91 (89%) Strand = Plus / Plus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 |||||||||| |||||||||||||||||| |||||||||| |||||| ||||| ||| Sbjct: 21611 ttttctttcaggcctttcaaccaatcaattcgacctcgtattgcagctcgagctaatact 21670 Query: 138 cgagcagtttcttgaaaacttgcttcagata 168 |||| ||||||||||||||||||||| |||| Sbjct: 21671 cgagtagtttcttgaaaacttgcttccgata 21701
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 93.7 bits (47), Expect = 7e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 3 tcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtat 57 |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct: 10259823 tcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtat 10259769
>dbj|AP005659.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0649C11 Length = 138870 Score = 93.7 bits (47), Expect = 7e-16 Identities = 53/55 (96%) Strand = Plus / Minus Query: 3 tcttgtcttgtggggaacgatgcacaaatttttggaatccggtaccaacaggtat 57 |||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct: 64050 tcttgtcttgtgggtaacggtgcacaaatttttggaatccggtaccaacaggtat 63996
>dbj|AB087420.1| Anthoceros formosae chloroplast rpoC2 mRNA for RNA polymerase beta'' subunit, complete cds Length = 4494 Score = 91.7 bits (46), Expect = 3e-15 Identities = 112/134 (83%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 |||||||| || ||||| ||||| ||||| |||||||| || || ||||| ||||| ||| Sbjct: 4138 ttttcttttaacccttttaaccagtcaattcgacctcgaagagcggctttggctaatact 4079 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 197 || | ||||||||||||||| ||||| ||||| ||||| || ||||| || || ||| || Sbjct: 4078 cgggtagtttcttgaaaactggcttccgatataaaactctgagtattgagagacgccttt 4019 Query: 198 gttattcccaataa 211 |||||||| ||||| Sbjct: 4018 gttattcctaataa 4005
>dbj|AB029695.1| Abies veitchii DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 177 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029694.1| Abies sibirica DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 548 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 177 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029693.1| Abies sachalinensis DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 177 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029692.1| Abies nephrolepis DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 177 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029691.1| Abies mariesii DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 518 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 177 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029690.1| Abies lasiocarpa DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 518 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 177 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029689.1| Abies koreana DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 177 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029688.1| Abies homolepis DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 177 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029687.1| Abies holophylla DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 177 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029686.1| Abies fraseri DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 518 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 177 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029685.1| Abies firma DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 177 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029684.1| Abies fargesii DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 177 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029683.1| Abies fabri DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 509 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 177 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>gb|AC136501.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0044M15, complete sequence Length = 144568 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 326 cacttttgatgttacttggcgtataataatctctatatgtctattatggatctgtacccc 385 |||||||||||||||||| || | ||||||||| ||||||||||||||||||||||| || Sbjct: 60416 cacttttgatgttacttgacgcacaataatctcgatatgtctattatggatctgtactcc 60475 Query: 386 ttgggatcga 395 ||| ||||| Sbjct: 60476 ctggtatcga 60485
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 326 cacttttgatgttacttggcgtataataatctctatatgtctattatggatctgtacccc 385 |||||||||||||||||| || | ||||||||| ||||||||||||||||||||||| || Sbjct: 10757056 cacttttgatgttacttgacgcacaataatctcgatatgtctattatggatctgtactcc 10756997 Query: 386 ttgggatcga 395 ||| ||||| Sbjct: 10756996 ctggtatcga 10756987 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 ttttggattttattaaccaaa 422 ||||||||||||||||||||| Sbjct: 24308258 ttttggattttattaaccaaa 24308238
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 326 cacttttgatgttacttggcgtataataatctctatatgtctattatggatctgtacccc 385 |||||||||||||||||| || | ||||||||| ||||||||||||||||||||||| || Sbjct: 10836245 cacttttgatgttacttgacgcacaataatctcgatatgtctattatggatctgtactcc 10836186 Query: 386 ttgggatcga 395 ||| ||||| Sbjct: 10836185 ctggtatcga 10836176 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 ttttggattttattaaccaaa 422 ||||||||||||||||||||| Sbjct: 24619927 ttttggattttattaaccaaa 24619907
>gb|DQ279899.1| Crithopsis delileana translation initiation factor gene, partial cds Length = 1494 Score = 81.8 bits (41), Expect = 3e-12 Identities = 41/41 (100%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttggaatc 41 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 584 gttcttgtcttgtggggaacgatgcacaaatttttggaatc 544
>dbj|AB077118.1| Prunus persica mRNA, microsatellite marker MA004b Length = 276 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 415 taaccaaagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaag 474 |||||||||| ||||||||||| |||| ||||||||||| |||||||| |||||||||| Sbjct: 1 taaccaaagagatacgactttgtactatagttagctcagcaccaatcaaaaatccccaag 60 Query: 475 ggaccccaagaattc 489 | | |||||||||| Sbjct: 61 gaattccaagaattc 75
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 ||||||||||| || |||| ||||||||| || || || ||||||||||| || || ||| Sbjct: 16022 ttttctttcaaccccttcagccaatcaattcggccgcgaagggcagctttagccaatact 16081 Query: 138 cgagcagtttcttgaaaacttgcttc 163 |||| |||||||||||||||||||| Sbjct: 16082 cgagtggtttcttgaaaacttgcttc 16107
>ref|XM_475052.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1791 Score = 75.8 bits (38), Expect = 2e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 634 ctaacctatctcccttgtaaaggatttctccataatgaccattaacagttgctc 687 |||||||||| || |||||||||||||| ||||||||||||| ||||||||||| Sbjct: 1791 ctaacctatcccctttgtaaaggatttccccataatgaccatgaacagttgctc 1738
>dbj|AB206662.1| Symplocarpus nabekuraensis chloroplast rps2, rpoC2 genes for ribosomal protein S2, RNA polymerase beta'' subunit, partial cds Length = 932 Score = 73.8 bits (37), Expect = 7e-10 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 29 aatttttggaatccggtaccaacaggtataatnnnnnnnagnaactacgttttctttcaa 88 |||||||||||||||||||||||||||||||| || ||| || || ||||||| Sbjct: 843 aatttttggaatccggtaccaacaggtataatcccccccag-aacaacattctctttcag 901 Query: 89 gcctttcaaccaatcaatgcgacctcgtag 118 ||||||||||||||||| ||||||||||| Sbjct: 902 tcctttcaaccaatcaatacgacctcgtag 931
>dbj|AB206660.1| Symplocarpus foetidus chloroplast rps2, rpoC2 genes for ribosomal protein S2, RNA polymerase beta'' subunit, partial cds Length = 930 Score = 73.8 bits (37), Expect = 7e-10 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 29 aatttttggaatccggtaccaacaggtataatnnnnnnnagnaactacgttttctttcaa 88 |||||||||||||||||||||||||||||||| || ||| || || ||||||| Sbjct: 841 aatttttggaatccggtaccaacaggtataatcccccccag-aacaacattctctttcag 899 Query: 89 gcctttcaaccaatcaatgcgacctcgtag 118 ||||||||||||||||| ||||||||||| Sbjct: 900 tcctttcaaccaatcaatacgacctcgtag 929
>dbj|AB206659.1| Lysichiton camtschatcensis chloroplast rps2, rpoC2 genes for ribosomal protein S2, RNA polymerase beta'' subunit, partial cds Length = 934 Score = 73.8 bits (37), Expect = 7e-10 Identities = 76/90 (84%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 29 aatttttggaatccggtaccaacaggtataatnnnnnnnagnaactacgttttctttcaa 88 ||||||| |||||||||||||||||||||||| || ||| || || ||||||| Sbjct: 845 aattttttgaatccggtaccaacaggtataatcccccccag-aacaacattctctttcag 903 Query: 89 gcctttcaaccaatcaatgcgacctcgtag 118 |||||||||||||||||| ||||||||||| Sbjct: 904 gcctttcaaccaatcaatacgacctcgtag 933
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 69.9 bits (35), Expect = 1e-08 Identities = 89/107 (83%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 |||||||| || ||||| ||||| ||||| || ||| || |||||||||||||||||| Sbjct: 15733 ttttcttttaaaccttttaaccagtcaattcggccttttaacgcagcttttgctaaaact 15674 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtatt 184 | | ||||||||||||||| ||||| || || |||||||| ||||| Sbjct: 15673 cttgtagtttcttgaaaactagcttctgaaataaaactttgagtatt 15627
>dbj|AB206661.1| Symplocarpus nipponicus chloroplast rps2, rpoC2 genes for ribosomal protein S2, RNA polymerase beta'' subunit, partial cds Length = 929 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 29 aatttttggaatccggtaccaacaggtataatnnnnnnnagnaactacgttttctttcaa 88 ||||||| |||||||||||||||||||||||| || ||| || || ||||||| Sbjct: 840 aattttttgaatccggtaccaacaggtataatcccccccag-aacaacattctctttcag 898 Query: 89 gcctttcaaccaatcaatgcgacctcgtag 118 ||||||||||||||||| ||||||||||| Sbjct: 899 tcctttcaaccaatcaatacgacctcgtag 928
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 649 tgtaaaggatttctccataatgaccattaacagttgctcctgtagtggc 697 |||||||||||| ||||||||||| || ||| ||||||||||||||||| Sbjct: 7731598 tgtaaaggatttatccataatgactatgaacggttgctcctgtagtggc 7731550
>dbj|AP005971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0079K11 Length = 130082 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 649 tgtaaaggatttctccataatgaccattaacagttgctcctgtagtggc 697 |||||||||||| ||||||||||| || ||| ||||||||||||||||| Sbjct: 99160 tgtaaaggatttatccataatgactatgaacggttgctcctgtagtggc 99112
>emb|X70810.2|CLEGCGA Euglena gracilis chloroplast complete genome Length = 143171 Score = 61.9 bits (31), Expect = 3e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 120 gcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 178 |||||||||| |||||||| || ||||||||||||||| |||| || ||| |||||||| Sbjct: 102965 gcagcttttgttaaaactctagtagtttcttgaaaactcgcttgagctataaaactttg 103023
>emb|X17191.1|CHEGRPO E.gracilis chloroplast RNA polymerase rpoB-rpoC1-rpoC2 operon Length = 12840 Score = 61.9 bits (31), Expect = 3e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 120 gcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 178 |||||||||| |||||||| || ||||||||||||||| |||| || ||| |||||||| Sbjct: 12749 gcagcttttgttaaaactctagtagtttcttgaaaactcgcttgagctataaaactttg 12691
>gb|M22010.1|EGRCPRPS Euglena gracilis chloroplast ribosomal proteins S4 and S11 genes, complete cds, RNA polymerase subunit (rpoC2) gene, 3' end and tRNA genes Length = 3343 Score = 61.9 bits (31), Expect = 3e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 120 gcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 178 |||||||||| |||||||| || ||||||||||||||| |||| || ||| |||||||| Sbjct: 650 gcagcttttgttaaaactctagtagtttcttgaaaactcgcttgagctataaaactttg 592
>emb|V00160.1|CHEGTN E. gracilis genes for val, asn, arg and leu tRNAs Length = 1600 Score = 61.9 bits (31), Expect = 3e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 120 gcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 178 |||||||||| |||||||| || ||||||||||||||| |||| || ||| |||||||| Sbjct: 649 gcagcttttgttaaaactctagtagtttcttgaaaactcgcttgagctataaaactttg 591
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 52.0 bits (26), Expect = 0.003 Identities = 32/34 (94%) Strand = Plus / Plus Query: 144 gtttcttgaaaacttgcttcagatatgaaacttt 177 |||||||||||||||||| ||||||| ||||||| Sbjct: 32408 gtttcttgaaaacttgctgcagatataaaacttt 32441
>dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1521_G01 Length = 144102 Score = 52.0 bits (26), Expect = 0.003 Identities = 35/38 (92%) Strand = Plus / Plus Query: 23 tgcacaaatttttggaatccggtaccaacaggtataat 60 ||||||||||||| ||||| ||||| |||||||||||| Sbjct: 126822 tgcacaaatttttagaatctggtactaacaggtataat 126859
>gb|U30821.1|CPU30821 Cyanophora paradoxa cyanelle, complete genome Length = 135599 Score = 52.0 bits (26), Expect = 0.003 Identities = 53/62 (85%) Strand = Plus / Plus Query: 123 gcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggta 182 |||||||||||||| |||| |||||||| ||||||||| |||| || || ||||| ||| Sbjct: 75461 gcttttgctaaaacacgagttgtttcttggaaacttgctgcagaaataaagctttgagta 75520 Query: 183 tt 184 || Sbjct: 75521 tt 75522
>gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 genomic sequence, complete sequence Length = 148611 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttgg 37 |||||||| ||||||| |||| ||||||||||||||| Sbjct: 142712 gttcttgttttgtgggtaacggtgcacaaatttttgg 142676
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttgg 37 |||||||| ||||||| |||| ||||||||||||||| Sbjct: 20565 gttcttgttttgtgggtaacggtgcacaaatttttgg 20529
>ref|NM_197459.1| Oryza sativa (japonica cultivar-group) RNA polymerase beta' subunit-2 5'-partial (OSJNBa0034L04.39), mRNA Length = 183 Score = 48.1 bits (24), Expect = 0.039 Identities = 33/36 (91%) Strand = Plus / Minus Query: 1 gttcttgtcttgtggggaacgatgcacaaatttttg 36 |||||||| ||||||| |||| |||||||||||||| Sbjct: 36 gttcttgttttgtgggtaacggtgcacaaatttttg 1
>emb|AJ538942.1|NTA538942 Nicotiana tabacum cDNA-AFLP-fragment BT3-M14-016 Length = 217 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Plus Query: 608 tctcgatttttcatatataaacgtaactaa 637 |||||||||||||||||| || |||||||| Sbjct: 132 tctcgatttttcatatatgaatgtaactaa 161
>gb|AC116875.10| Mus musculus chromosome 8, clone RP24-426B21, complete sequence Length = 188938 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 438 gctatggttagctcagctcca 458 ||||||||||||||||||||| Sbjct: 153544 gctatggttagctcagctcca 153524
>gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0095P22, complete sequence Length = 162766 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 ttttggattttattaaccaaa 422 ||||||||||||||||||||| Sbjct: 109367 ttttggattttattaaccaaa 109347
>gb|AC147000.32| Medicago truncatula clone mth2-124a16, complete sequence Length = 113682 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 651 taaaggatttctccataatgaccat 675 |||||||||||||||||||| |||| Sbjct: 89090 taaaggatttctccataatggccat 89066
>emb|AL035469.7|HS46B1 Human DNA sequence from clone RP1-46B1 on chromosome 6q12, complete sequence Length = 158204 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 gagcagtttcttgaaaacttgcttc 163 |||||| |||||||||||||||||| Sbjct: 29539 gagcagcttcttgaaaacttgcttc 29563
>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0096I10, complete sequence Length = 171946 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 ttttggattttattaaccaaa 422 ||||||||||||||||||||| Sbjct: 100731 ttttggattttattaaccaaa 100751
>gb|AY299195.1| Chenopodium rubrum ribosomal protein S2 and ATPase subunit IV bicistronic mRNA, complete cds; nuclear genes for plastid products Length = 2711 Score = 42.1 bits (21), Expect = 2.4 Identities = 51/61 (83%) Strand = Plus / Minus Query: 75 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 134 ||||||||||| || |||| ||||||||| || || || || || || |||||||||||| Sbjct: 61 acgttttcttttaatccttgcaaccaatcgatacggccccggagagccgcttttgctaaa 2 Query: 135 a 135 | Sbjct: 1 a 1
>ref|NM_166703.1| Drosophila melanogaster epithelial membrane protein CG2727-RC, transcript variant C (emp), mRNA Length = 2378 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 cctcgtagggcagcttttgct 131 ||||||||||||||||||||| Sbjct: 982 cctcgtagggcagcttttgct 962
>ref|NM_166702.1| Drosophila melanogaster epithelial membrane protein CG2727-RB, transcript variant B (emp), mRNA Length = 2256 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 cctcgtagggcagcttttgct 131 ||||||||||||||||||||| Sbjct: 860 cctcgtagggcagcttttgct 840
>ref|NM_079135.2| Drosophila melanogaster epithelial membrane protein CG2727-RA, transcript variant A (emp), mRNA Length = 2284 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 cctcgtagggcagcttttgct 131 ||||||||||||||||||||| Sbjct: 888 cctcgtagggcagcttttgct 868
>gb|AY070494.1| Drosophila melanogaster GH06663 full length cDNA Length = 2994 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 cctcgtagggcagcttttgct 131 ||||||||||||||||||||| Sbjct: 1574 cctcgtagggcagcttttgct 1554
>gb|AC007884.5|AC007884 Drosophila melanogaster, chromosome 2R, region 60F-60F, BAC clone BACR08I14, complete sequence Length = 190616 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 cctcgtagggcagcttttgct 131 ||||||||||||||||||||| Sbjct: 138408 cctcgtagggcagcttttgct 138428
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 ccctgctcgttccgctcgcaa 268 ||||||||||||||||||||| Sbjct: 3482790 ccctgctcgttccgctcgcaa 3482770
>gb|AE003465.3| Drosophila melanogaster chromosome 2R, section 72 of 73 of the complete sequence Length = 343833 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 cctcgtagggcagcttttgct 131 ||||||||||||||||||||| Sbjct: 290712 cctcgtagggcagcttttgct 290732
>gb|BT001535.1| Drosophila melanogaster RE08130 full insert cDNA Length = 2296 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 cctcgtagggcagcttttgct 131 ||||||||||||||||||||| Sbjct: 888 cctcgtagggcagcttttgct 868
>gb|AF494278.1| Chaetosphaeridium globosum chloroplast, complete genome Length = 131183 Score = 42.1 bits (21), Expect = 2.4 Identities = 108/137 (78%) Strand = Plus / Minus Query: 78 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 137 |||||||| ||||||| |||||||| || | |||| | || |||||||||| | |||| Sbjct: 15895 ttttcttttaagccttgtaaccaatctattctaccttgaagagcagcttttgtaagaact 15836 Query: 138 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaagccctt 197 | ||||||||||||||| ||||| || || ||||| | ||||| | ||||| ||| Sbjct: 15835 ttggtagtttcttgaaaactagcttctgaaataaaactgtaagtatttaaagaagctctt 15776 Query: 198 gttattcccaataagat 214 |||||||| || ||||| Sbjct: 15775 gttattcctaacaagat 15759
>emb|X73332.1|DMEMP D.melanogaster emp mRNA Length = 2291 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 cctcgtagggcagcttttgct 131 ||||||||||||||||||||| Sbjct: 886 cctcgtagggcagcttttgct 866
>gb|AY363680.1| Yersinia aldovae urease gene locus, and Yut (yut) genes, complete cds Length = 7232 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 ttttattaaccaaagaaata 428 |||||||||||||||||||| Sbjct: 2726 ttttattaaccaaagaaata 2707
>gb|AC005249.2| Homo sapiens BAC clone GS1-115J1 from 7, complete sequence Length = 162531 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tttcttgaaaacttgcttca 164 |||||||||||||||||||| Sbjct: 118236 tttcttgaaaacttgcttca 118255
>gb|AC004903.2| Homo sapiens PAC clone RP5-828B12 from 7, complete sequence Length = 118869 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 ttttggattttattaaccaa 421 |||||||||||||||||||| Sbjct: 8177 ttttggattttattaaccaa 8158
>gb|AC145519.1| Pan troglodytes BAC clone RP43-32M13 from 7, complete sequence Length = 155340 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 tttcttgaaaacttgcttca 164 |||||||||||||||||||| Sbjct: 57713 tttcttgaaaacttgcttca 57732
>gb|AC142284.1| Pan troglodytes BAC clone RP43-163P11 from 7, complete sequence Length = 171686 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 ttttggattttattaaccaa 421 |||||||||||||||||||| Sbjct: 129713 ttttggattttattaaccaa 129694
>emb|AL732437.12| Human DNA sequence from clone RP11-116G8 on chromosome 10 Contains the NET1 gene for neuroepithelial cell transforming gene 1, the gene for calmodulin-like skin protein (CLSP), the CALML3 gene for calmodulin-like 3 (CLP) and four CpG islands, complete sequence Length = 183441 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tgggtattcagggaagccct 196 |||||||||||||||||||| Sbjct: 73228 tgggtattcagggaagccct 73209
>emb|AL033530.1|HS629A15 Human DNA sequence from clone RP4-629A15 on chromosome 1p31.1-31.3 Contains EST, complete sequence Length = 93643 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 gatttgttccacttttggaa 585 |||||||||||||||||||| Sbjct: 84176 gatttgttccacttttggaa 84195
>emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013K16, complete sequence Length = 145739 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ttttggattttattaaccaa 421 |||||||||||||||||||| Sbjct: 105847 ttttggattttattaaccaa 105866
>dbj|AK128534.1| Homo sapiens cDNA FLJ46692 fis, clone TRACH3012718 Length = 4123 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tgggtattcagggaagccct 196 |||||||||||||||||||| Sbjct: 1872 tgggtattcagggaagccct 1853
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ttttggattttattaaccaa 421 |||||||||||||||||||| Sbjct: 6482744 ttttggattttattaaccaa 6482763
>gb|AC108037.3| Homo sapiens BAC clone RP11-168E17 from 4, complete sequence Length = 73477 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 ataatctctatatgtctatt 370 |||||||||||||||||||| Sbjct: 8980 ataatctctatatgtctatt 8961
>gb|AC016647.7| Homo sapiens chromosome 16 clone RP11-89G14, complete sequence Length = 160358 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 ctacgttttctttcaagcct 92 |||||||||||||||||||| Sbjct: 108631 ctacgttttctttcaagcct 108612
>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017C12 Length = 135356 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ttttggattttattaaccaa 421 |||||||||||||||||||| Sbjct: 70542 ttttggattttattaaccaa 70561
>dbj|AP003963.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1779_B07 Length = 151427 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ttttggattttattaaccaa 421 |||||||||||||||||||| Sbjct: 139311 ttttggattttattaaccaa 139330
>dbj|AP003805.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1080_F08 Length = 94139 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 ttttggattttattaaccaa 421 |||||||||||||||||||| Sbjct: 39833 ttttggattttattaaccaa 39852
>emb|AL132952.1|CEY51H4A Caenorhabditis elegans YAC Y51H4A, complete sequence Length = 269619 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tttgctaaaactcgagcagtttct 149 |||| ||||||||||||||||||| Sbjct: 46250 tttgttaaaactcgagcagtttct 46227 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tttgctaaaactcgagcagtttct 149 |||| ||||||||||||||||||| Sbjct: 43012 tttgttaaaactcgagcagtttct 42989
>gb|AC087362.13| Homo sapiens chromosome 8, clone RP11-513D5, complete sequence Length = 142170 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 ttttattaaccaaagaaata 428 |||||||||||||||||||| Sbjct: 56911 ttttattaaccaaagaaata 56930
>emb|AL831877.1|HSM803202 Homo sapiens mRNA; cDNA DKFZp547H1510 (from clone DKFZp547H1510) Length = 546 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tgggtattcagggaagccct 196 |||||||||||||||||||| Sbjct: 96 tgggtattcagggaagccct 77
>dbj|AP006715.1| Porphyra yezoensis chloroplast DNA, complete genome Length = 191952 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 agtttcttgaaaacttgcttcaga 166 ||||||||||||||||||| |||| Sbjct: 49857 agtttcttgaaaacttgctgcaga 49880 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,440,285 Number of Sequences: 3902068 Number of extensions: 5440285 Number of successful extensions: 97926 Number of sequences better than 10.0: 172 Number of HSP's better than 10.0 without gapping: 179 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96412 Number of HSP's gapped (non-prelim): 1465 length of query: 699 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 676 effective length of database: 17,143,297,704 effective search space: 11588869247904 effective search space used: 11588869247904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
