ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13d17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY603974.1| Oryza sativa (indica cultivar-group) BTH-induced ... 220 4e-54
2dbj|AK068957.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 4e-54
3dbj|AK072473.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 3e-49
4gb|AY107898.1| Zea mays PCO065177 mRNA sequence 145 2e-31
5ref|NM_196105.1| Oryza sativa (japonica cultivar-group) putative... 101 3e-18
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 101 3e-18
7gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare str... 101 3e-18
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
9dbj|AK100049.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
10dbj|AK071987.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
11dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete ge... 78 4e-11
12gb|AC113335.1| Genomic sequence for Oryza sativa (japonica culti... 74 6e-10
13dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 74 6e-10
14gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 74 6e-10
15gb|AC119805.6| Mus musculus chromosome 16, clone RP23-144H22, co... 42 2.3
16emb|AL035406.25|HS233K16 Human DNA sequence from clone RP1-233K1... 42 2.3
17gb|AC156548.13| Mus musculus chromosome 5, clone RP23-412C8, com... 40 8.9
18gb|AY500156.1| Lycopersicon esculentum MAP3Ka mRNA, complete cds 40 8.9
19emb|CR938718.3| Pig DNA sequence from clone CH242-2F11, complete... 40 8.9
20gb|AC120122.10| Mus musculus chromosome 10, clone RP23-75O24, co... 40 8.9
21gb|AC163219.3| Mus musculus chromosome 5, clone RP24-155K17, com... 40 8.9
22emb|AL160272.16| Human DNA sequence from clone RP11-336A17 on ch... 40 8.9
23gb|AC092995.7| Homo sapiens 3 BAC RP11-692L6 (Roswell Park Cance... 40 8.9
24emb|AL160282.18| Human DNA sequence from clone RP11-315I20 on ch... 40 8.9
25emb|AL133401.16| Mouse DNA sequence from clone RP21-72L18 on chr... 40 8.9
26emb|AL672023.7| Mouse DNA sequence from clone RP23-339O19 on chr... 40 8.9

>gb|AY603974.1| Oryza sativa (indica cultivar-group) BTH-induced protein phosphatase
            1 (bipp2C1) mRNA, complete cds
          Length = 1900

 Score =  220 bits (111), Expect = 4e-54
 Identities = 399/495 (80%)
 Strand = Plus / Minus

                                                                        
Query: 154  ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 213
            ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||| |||||
Sbjct: 1721 ttcagatttccgaacaacggatacaacaactgttacatcatccagcttgcccccagagta 1662

                                                                        
Query: 214  gcccagatagccttctgcgagcgccgcgtccgagaacgggctcctcccggacccggacct 273
             |||||||| ||  |||| || |||||||| ||||| ||||| || | ||   | || ||
Sbjct: 1661 acccagatacccaactgcaagagccgcgtcagagaaggggcttctacaggttgccgatct 1602

                                                                        
Query: 274  gcccacctcctttgctctagcagccaggagctcagcaatctccgtaggcttgcggtcagc 333
            |||||| ||||| || |||||| |||||| ||| |||||||||| ||||||| || | ||
Sbjct: 1601 gcccacttccttcgccctagcaaccaggaactccgcaatctccgaaggcttgaggccggc 1542

                                                                        
Query: 334  ttccagagatttcgagacaatagatgccacctcatgatcgtagacgttgtcgaacagacc 393
            |||||  ||||| ||||  | || ||| |  || |  || ||||| ||||| || || ||
Sbjct: 1541 ttccaatgatttggagatgacagctgctatttcttcctcatagacattgtcaaaaaggcc 1482

                                                                        
Query: 394  atccgacgctgtcacaatggcatcgccttcttgtaaatcgatagcgtaattctgtacaag 453
            ||| |  ||||||||||||||||| |||||||||| ||| || | ||| |||||||||||
Sbjct: 1481 atctgttgctgtcacaatggcatctccttcttgtagatcaattgtgtatttctgtacaag 1422

                                                                        
Query: 454  tcttgaaggatcaacaccgttttctatttgcaacgggaaattgaaaccgtatgtcatcgc 513
            | |  |||||||| | || || || |||||||| || |||||||| ||||| ||||| | 
Sbjct: 1421 tttgaaaggatcatcccccttctcaatttgcaagggaaaattgaagccgtaagtcattgg 1362

                                                                        
Query: 514  ctttgtttgtgtgtatacttgcccatttcttatcaccagtaatcccgaatcgccaatatt 573
            ||||| || |   |||| ||  || |||||||||||||  ||||| ||||| || |||||
Sbjct: 1361 ctttgatttttgatatatttctccgtttcttatcaccaagaatccagaatcacctatatt 1302

                                                                        
Query: 574  agatacatgaaggacctggccatcaaagtgagcaaccaagacagttgaagaaccagggga 633
            | || ||||||| || || |||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1301 acatgcatgaagtacttgaccatcaaagtgagcaaccaaaacagtggaagaaccagggga 1242

                           
Query: 634  ccgtgcttcaactgc 648
             ||||||||| ||||
Sbjct: 1241 tcgtgcttcatctgc 1227



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>dbj|AK068957.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003M17, full
            insert sequence
          Length = 2158

 Score =  220 bits (111), Expect = 4e-54
 Identities = 399/495 (80%)
 Strand = Plus / Minus

                                                                        
Query: 154  ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 213
            ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||| |||||
Sbjct: 1971 ttcagatttccgaacaacggatacaacaactgttacatcatccagcttgcccccagagta 1912

                                                                        
Query: 214  gcccagatagccttctgcgagcgccgcgtccgagaacgggctcctcccggacccggacct 273
             |||||||| ||  |||| || |||||||| ||||| ||||| || | ||   | || ||
Sbjct: 1911 acccagatacccaactgcaagagccgcgtcagagaaggggcttctacaggttgccgatct 1852

                                                                        
Query: 274  gcccacctcctttgctctagcagccaggagctcagcaatctccgtaggcttgcggtcagc 333
            |||||| ||||| || |||||| |||||| ||| |||||||||| ||||||| || | ||
Sbjct: 1851 gcccacttccttcgccctagcaaccaggaactccgcaatctccgaaggcttgaggccggc 1792

                                                                        
Query: 334  ttccagagatttcgagacaatagatgccacctcatgatcgtagacgttgtcgaacagacc 393
            |||||  ||||| ||||  | || ||| |  || |  || ||||| ||||| || || ||
Sbjct: 1791 ttccaatgatttggagatgacagctgctatttcttcctcatagacattgtcaaaaaggcc 1732

                                                                        
Query: 394  atccgacgctgtcacaatggcatcgccttcttgtaaatcgatagcgtaattctgtacaag 453
            ||| |  ||||||||||||||||| |||||||||| ||| || | ||| |||||||||||
Sbjct: 1731 atctgttgctgtcacaatggcatctccttcttgtagatcaattgtgtatttctgtacaag 1672

                                                                        
Query: 454  tcttgaaggatcaacaccgttttctatttgcaacgggaaattgaaaccgtatgtcatcgc 513
            | |  |||||||| | || || || |||||||| || |||||||| ||||| ||||| | 
Sbjct: 1671 tttgaaaggatcatcccccttctcaatttgcaagggaaaattgaagccgtaagtcattgg 1612

                                                                        
Query: 514  ctttgtttgtgtgtatacttgcccatttcttatcaccagtaatcccgaatcgccaatatt 573
            ||||| || |   |||| ||  || |||||||||||||  ||||| ||||| || |||||
Sbjct: 1611 ctttgatttttgatatatttctccgtttcttatcaccaagaatccagaatcacctatatt 1552

                                                                        
Query: 574  agatacatgaaggacctggccatcaaagtgagcaaccaagacagttgaagaaccagggga 633
            | || ||||||| || || |||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1551 acatgcatgaagtacttgaccatcaaagtgagcaaccaaaacagtggaagaaccagggga 1492

                           
Query: 634  ccgtgcttcaactgc 648
             ||||||||| ||||
Sbjct: 1491 tcgtgcttcatctgc 1477



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>dbj|AK072473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114B22, full
            insert sequence
          Length = 2756

 Score =  204 bits (103), Expect = 3e-49
 Identities = 388/483 (80%)
 Strand = Plus / Minus

                                                                        
Query: 166  aacaatggacacgacaactgttacatcatccaacttgcccccggagtagcccagatagcc 225
            ||||| ||| || ||||||||||||||||||| ||||||||| ||||| |||||||| ||
Sbjct: 1920 aacaacggatacaacaactgttacatcatccagcttgcccccagagtaacccagataccc 1861

                                                                        
Query: 226  ttctgcgagcgccgcgtccgagaacgggctcctcccggacccggacctgcccacctcctt 285
              |||| || |||||||| ||||| ||||| || | ||   | || |||||||| |||||
Sbjct: 1860 aactgcaagagccgcgtcagagaaggggcttctacaggttgccgatctgcccacttcctt 1801

                                                                        
Query: 286  tgctctagcagccaggagctcagcaatctccgtaggcttgcggtcagcttccagagattt 345
             || |||||| |||||| ||| |||||||||| ||||||| || | |||||||  |||||
Sbjct: 1800 cgccctagcaaccaggaactccgcaatctccgaaggcttgaggccggcttccaatgattt 1741

                                                                        
Query: 346  cgagacaatagatgccacctcatgatcgtagacgttgtcgaacagaccatccgacgctgt 405
             ||||  | || ||| |  || |  || ||||| ||||| || || ||||| |  |||||
Sbjct: 1740 ggagatgacagctgctatttcttcctcatagacattgtcaaaaaggccatctgttgctgt 1681

                                                                        
Query: 406  cacaatggcatcgccttcttgtaaatcgatagcgtaattctgtacaagtcttgaaggatc 465
            |||||||||||| |||||||||| ||| || | ||| |||||||||||| |  |||||||
Sbjct: 1680 cacaatggcatctccttcttgtagatcaattgtgtatttctgtacaagtttgaaaggatc 1621

                                                                        
Query: 466  aacaccgttttctatttgcaacgggaaattgaaaccgtatgtcatcgcctttgtttgtgt 525
            | | || || || |||||||| || |||||||| ||||| ||||| | ||||| || |  
Sbjct: 1620 atcccccttctcaatttgcaagggaaaattgaagccgtaagtcattggctttgatttttg 1561

                                                                        
Query: 526  gtatacttgcccatttcttatcaccagtaatcccgaatcgccaatattagatacatgaag 585
             |||| ||  || |||||||||||||  ||||| ||||| || |||||| || |||||||
Sbjct: 1560 atatatttctccgtttcttatcaccaagaatccagaatcacctatattacatgcatgaag 1501

                                                                        
Query: 586  gacctggccatcaaagtgagcaaccaagacagttgaagaaccaggggaccgtgcttcaac 645
             || || |||||||||||||||||||| ||||| |||||||||||||| ||||||||| |
Sbjct: 1500 tacttgaccatcaaagtgagcaaccaaaacagtggaagaaccaggggatcgtgcttcatc 1441

               
Query: 646  tgc 648
            |||
Sbjct: 1440 tgc 1438



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>gb|AY107898.1| Zea mays PCO065177 mRNA sequence
          Length = 1316

 Score =  145 bits (73), Expect = 2e-31
 Identities = 286/357 (80%)
 Strand = Plus / Minus

                                                                        
Query: 154  ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 213
            ||||||||||| |||||| || || ||||| ||||||||||||| |||||| ||||||||
Sbjct: 1267 ttcagatttccgaacaatcgatacaacaaccgttacatcatccagcttgccgccggagta 1208

                                                                        
Query: 214  gcccagatagccttctgcgagcgccgcgtccgagaacgggctcctcccggacccggacct 273
            |||||| || ||  | ||||| || | |||||||||||||||||| ||  ||||  ||| 
Sbjct: 1207 gcccaggtacccagccgcgagagcggagtccgagaacgggctccttccaaacccacaccg 1148

                                                                        
Query: 274  gcccacctcctttgctctagcagccaggagctcagcaatctccgtaggcttgcggtcagc 333
             ||||||||||| ||||  ||| |||| |  || || || ||||| |||||  | |||||
Sbjct: 1147 ccccacctccttcgctcgggcaaccagtaaatcggcgatttccgtgggcttcagatcagc 1088

                                                                        
Query: 334  ttccagagatttcgagacaatagatgccacctcatgatcgtagacgttgtcgaacagacc 393
            ||| |  ||||||||||| ||   |||||| || |  ||||||||||||||||| |||||
Sbjct: 1087 ttctaatgatttcgagacgatgcctgccacttcttcctcgtagacgttgtcgaaaagacc 1028

                                                                        
Query: 394  atccgacgctgtcacaatggcatcgccttcttgtaaatcgatagcgtaattctgtacaag 453
             || |||||||| |||| | | ||||||||||||| |  ||| ||||| |||||||||||
Sbjct: 1027 gtctgacgctgttacaacgacgtcgccttcttgtagacagatggcgtatttctgtacaag 968

                                                                     
Query: 454  tcttgaaggatcaacaccgttttctatttgcaacgggaaattgaaaccgtatgtcat 510
            | ||  ||| ||  | || || || || ||||||||||||||||||||||| |||||
Sbjct: 967  ttttagagggtcgtcgcccttctcaatctgcaacgggaaattgaaaccgtaagtcat 911



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 63/68 (92%)
 Strand = Plus / Minus

                                                                       
Query: 581 tgaaggacctggccatcaaagtgagcaaccaagacagttgaagaaccaggggaccgtgct 640
           |||||||||| |||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct: 840 tgaaggaccttgccatcaaagtgagcaactaaaacagtggaagaaccaggggaccgtgct 781

                   
Query: 641 tcaactgc 648
           ||| ||||
Sbjct: 780 tcatctgc 773



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>ref|NM_196105.1| Oryza sativa (japonica cultivar-group) putative protein phosphatase
            2C (OJ1003C07.6), mRNA
          Length = 1491

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                        
Query: 536  ccatttcttatcaccagtaatcccgaatcgccaatattagatacatgaaggacctggcca 595
            ||||||||||||||||| ||||| || || |||||||| ||| |||  |||| |||||||
Sbjct: 1103 ccatttcttatcaccagaaatccagagtctccaatattcgatgcattgaggaactggcca 1044

                                               
Query: 596  tcaaagtgagcaaccaagacagttgaagaaccagg 630
            ||||||||||||||||| ||||| |||||||||||
Sbjct: 1043 tcaaagtgagcaaccaaaacagtggaagaaccagg 1009



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 154  ttcagatttcctaacaatggacacgac 180
            |||||||||||| ||||||||||||||
Sbjct: 1485 ttcagatttcctgacaatggacacgac 1459



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  101 bits (51), Expect = 3e-18
 Identities = 135/163 (82%)
 Strand = Plus / Minus

                                                                           
Query: 154     ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 213
               ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||| |||||
Sbjct: 4801843 ttcagatttccgaacaacggatacaacaactgttacatcatccagcttgcccccagagta 4801784

                                                                           
Query: 214     gcccagatagccttctgcgagcgccgcgtccgagaacgggctcctcccggacccggacct 273
                |||||||| ||  |||| || |||||||| ||||| ||||| || | ||   | || ||
Sbjct: 4801783 acccagatacccaactgcaagagccgcgtcagagaaggggcttctacaggttgccgatct 4801724

                                                          
Query: 274     gcccacctcctttgctctagcagccaggagctcagcaatctcc 316
               |||||| ||||| || |||||| |||||| ||| |||||||||
Sbjct: 4801723 gcccacttccttcgccctagcaaccaggaactccgcaatctcc 4801681



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                       
Query: 593     ccatcaaagtgagcaaccaagacagttgaagaaccaggggaccgtgcttcaactgc 648
               |||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||
Sbjct: 4801108 ccatcaaagtgagcaaccaaaacagtggaagaaccaggggatcgtgcttcatctgc 4801053



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 401     gctgtcacaatggcatcgccttcttgta 428
               ||||||||||||||||| ||||||||||
Sbjct: 4801489 gctgtcacaatggcatctccttcttgta 4801462



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 116/147 (78%)
 Strand = Plus / Minus

                                                                           
Query: 445     ctgtacaagtcttgaaggatcaacaccgttttctatttgcaacgggaaattgaaaccgta 504
               |||||||||| |  |||||||| | || || || |||||||| || |||||||| |||||
Sbjct: 4801344 ctgtacaagtttgaaaggatcatcccccttctcaatttgcaagggaaaattgaagccgta 4801285

                                                                           
Query: 505     tgtcatcgcctttgtttgtgtgtatacttgcccatttcttatcaccagtaatcccgaatc 564
                ||||| | ||||| || |   |||| ||  || |||||||||||||  ||||| |||||
Sbjct: 4801284 agtcattggctttgatttttgatatatttctccgtttcttatcaccaagaatccagaatc 4801225

                                          
Query: 565     gccaatattagatacatgaaggacctg 591
                || |||||| || ||||||| |||||
Sbjct: 4801224 acctatattacatgcatgaagtacctg 4801198



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>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0019D17, from chromosome 3, complete sequence
          Length = 129658

 Score =  101 bits (51), Expect = 3e-18
 Identities = 135/163 (82%)
 Strand = Plus / Plus

                                                                         
Query: 154   ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 213
             ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||| |||||
Sbjct: 33612 ttcagatttccgaacaacggatacaacaactgttacatcatccagcttgcccccagagta 33671

                                                                         
Query: 214   gcccagatagccttctgcgagcgccgcgtccgagaacgggctcctcccggacccggacct 273
              |||||||| ||  |||| || |||||||| ||||| ||||| || | ||   | || ||
Sbjct: 33672 acccagatacccaactgcaagagccgcgtcagagaaggggcttctacaggttgccgatct 33731

                                                        
Query: 274   gcccacctcctttgctctagcagccaggagctcagcaatctcc 316
             |||||| ||||| || |||||| |||||| ||| |||||||||
Sbjct: 33732 gcccacttccttcgccctagcaaccaggaactccgcaatctcc 33774



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                     
Query: 593   ccatcaaagtgagcaaccaagacagttgaagaaccaggggaccgtgcttcaactgc 648
             |||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||
Sbjct: 34347 ccatcaaagtgagcaaccaaaacagtggaagaaccaggggatcgtgcttcatctgc 34402



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 401   gctgtcacaatggcatcgccttcttgta 428
             ||||||||||||||||| ||||||||||
Sbjct: 33966 gctgtcacaatggcatctccttcttgta 33993



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 116/147 (78%)
 Strand = Plus / Plus

                                                                         
Query: 445   ctgtacaagtcttgaaggatcaacaccgttttctatttgcaacgggaaattgaaaccgta 504
             |||||||||| |  |||||||| | || || || |||||||| || |||||||| |||||
Sbjct: 34111 ctgtacaagtttgaaaggatcatcccccttctcaatttgcaagggaaaattgaagccgta 34170

                                                                         
Query: 505   tgtcatcgcctttgtttgtgtgtatacttgcccatttcttatcaccagtaatcccgaatc 564
              ||||| | ||||| || |   |||| ||  || |||||||||||||  ||||| |||||
Sbjct: 34171 agtcattggctttgatttttgatatatttctccgtttcttatcaccaagaatccagaatc 34230

                                        
Query: 565   gccaatattagatacatgaaggacctg 591
              || |||||| || ||||||| |||||
Sbjct: 34231 acctatattacatgcatgaagtacctg 34257



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  101 bits (51), Expect = 3e-18
 Identities = 135/163 (82%)
 Strand = Plus / Minus

                                                                           
Query: 154     ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 213
               ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||| |||||
Sbjct: 4801958 ttcagatttccgaacaacggatacaacaactgttacatcatccagcttgcccccagagta 4801899

                                                                           
Query: 214     gcccagatagccttctgcgagcgccgcgtccgagaacgggctcctcccggacccggacct 273
                |||||||| ||  |||| || |||||||| ||||| ||||| || | ||   | || ||
Sbjct: 4801898 acccagatacccaactgcaagagccgcgtcagagaaggggcttctacaggttgccgatct 4801839

                                                          
Query: 274     gcccacctcctttgctctagcagccaggagctcagcaatctcc 316
               |||||| ||||| || |||||| |||||| ||| |||||||||
Sbjct: 4801838 gcccacttccttcgccctagcaaccaggaactccgcaatctcc 4801796



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                       
Query: 593     ccatcaaagtgagcaaccaagacagttgaagaaccaggggaccgtgcttcaactgc 648
               |||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||
Sbjct: 4801223 ccatcaaagtgagcaaccaaaacagtggaagaaccaggggatcgtgcttcatctgc 4801168



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 401     gctgtcacaatggcatcgccttcttgta 428
               ||||||||||||||||| ||||||||||
Sbjct: 4801604 gctgtcacaatggcatctccttcttgta 4801577



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 116/147 (78%)
 Strand = Plus / Minus

                                                                           
Query: 445     ctgtacaagtcttgaaggatcaacaccgttttctatttgcaacgggaaattgaaaccgta 504
               |||||||||| |  |||||||| | || || || |||||||| || |||||||| |||||
Sbjct: 4801459 ctgtacaagtttgaaaggatcatcccccttctcaatttgcaagggaaaattgaagccgta 4801400

                                                                           
Query: 505     tgtcatcgcctttgtttgtgtgtatacttgcccatttcttatcaccagtaatcccgaatc 564
                ||||| | ||||| || |   |||| ||  || |||||||||||||  ||||| |||||
Sbjct: 4801399 agtcattggctttgatttttgatatatttctccgtttcttatcaccaagaatccagaatc 4801340

                                          
Query: 565     gccaatattagatacatgaaggacctg 591
                || |||||| || ||||||| |||||
Sbjct: 4801339 acctatattacatgcatgaagtacctg 4801313



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>dbj|AK100049.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155A10, full
            insert sequence
          Length = 1876

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                        
Query: 536  ccatttcttatcaccagtaatcccgaatcgccaatattagatacatgaaggacctggcca 595
            ||||||||||||||||| ||||| || || |||||||| ||| |||  |||| |||||||
Sbjct: 1068 ccatttcttatcaccagaaatccagagtctccaatattcgatgcattgaggaactggcca 1009

                                               
Query: 596  tcaaagtgagcaaccaagacagttgaagaaccagg 630
            ||||||||||||||||| ||||| |||||||||||
Sbjct: 1008 tcaaagtgagcaaccaaaacagtggaagaaccagg 974



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 154  ttcagatttcctaacaatggacacgac 180
            |||||||||||| ||||||||||||||
Sbjct: 1450 ttcagatttcctgacaatggacacgac 1424



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>dbj|AK071987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091J19, full
            insert sequence
          Length = 1857

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                        
Query: 536  ccatttcttatcaccagtaatcccgaatcgccaatattagatacatgaaggacctggcca 595
            ||||||||||||||||| ||||| || || |||||||| ||| |||  |||| |||||||
Sbjct: 1129 ccatttcttatcaccagaaatccagagtctccaatattcgatgcattgaggaactggcca 1070

                                               
Query: 596  tcaaagtgagcaaccaagacagttgaagaaccagg 630
            ||||||||||||||||| ||||| |||||||||||
Sbjct: 1069 tcaaagtgagcaaccaaaacagtggaagaaccagg 1035



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 154  ttcagatttcctaacaatggacacgac 180
            |||||||||||| ||||||||||||||
Sbjct: 1511 ttcagatttcctgacaatggacacgac 1485



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>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome
          Length = 452528

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 52/55 (94%), Gaps = 1/55 (1%)
 Strand = Plus / Minus

                                                                     
Query: 35     attgggtcattcttcagcccaa-atgcaagcattcggactcgatccgaatatggc 88
              |||||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct: 431390 attgggtcattcttcagcccaagatgcaagcatttggactccatccgaatatggc 431336



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>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OJ1003C07, from chromosome 10, complete
             sequence
          Length = 115188

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                          
Query: 586   gacctggccatcaaagtgagcaaccaagacagttgaagaaccagg 630
             ||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 43930 gacctggccatcaaagtgagcaaccaaaacagtggaagaaccagg 43886



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 154   ttcagatttcctaacaatggacacgac 180
             |||||||||||| ||||||||||||||
Sbjct: 44642 ttcagatttcctgacaatggacacgac 44616



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 536   ccatttcttatcaccagtaatcccgaatcgccaatatt 573
             ||||||||||||||||| ||||| || || ||||||||
Sbjct: 44093 ccatttcttatcaccagaaatccagagtctccaatatt 44056



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                             
Query: 586      gacctggccatcaaagtgagcaaccaagacagttgaagaaccagg 630
                ||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 11115127 gacctggccatcaaagtgagcaaccaaaacagtggaagaaccagg 11115171



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 154      ttcagatttcctaacaatggacacgac 180
                |||||||||||| ||||||||||||||
Sbjct: 11114415 ttcagatttcctgacaatggacacgac 11114441



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 536      ccatttcttatcaccagtaatcccgaatcgccaatatt 573
                ||||||||||||||||| ||||| || || ||||||||
Sbjct: 11114964 ccatttcttatcaccagaaatccagagtctccaatatt 11115001



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                             
Query: 586      gacctggccatcaaagtgagcaaccaagacagttgaagaaccagg 630
                ||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 11121567 gacctggccatcaaagtgagcaaccaaaacagtggaagaaccagg 11121611



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 154      ttcagatttcctaacaatggacacgac 180
                |||||||||||| ||||||||||||||
Sbjct: 11120855 ttcagatttcctgacaatggacacgac 11120881



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 536      ccatttcttatcaccagtaatcccgaatcgccaatatt 573
                ||||||||||||||||| ||||| || || ||||||||
Sbjct: 11121404 ccatttcttatcaccagaaatccagagtctccaatatt 11121441



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>gb|AC119805.6| Mus musculus chromosome 16, clone RP23-144H22, complete sequence
          Length = 215566

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 515    tttgtttgtgtgtatacttgc 535
              |||||||||||||||||||||
Sbjct: 102153 tttgtttgtgtgtatacttgc 102133



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>emb|AL035406.25|HS233K16 Human DNA sequence from clone RP1-233K16 on chromosome 1p36.21-36.33
              Contains the 5' end of the NPHP4 gene for nephronophthisis
              4, the KCNAB2 gene for potassium voltage-gated channel,
              shaker-related subfamily, beta member 2, the 3' end of the
              CHD5 gene for chromodomain helicase DNA binding protein 5
              and a CpG island, complete sequence
          Length = 161651

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 622    agaaccaggggaccgtgcttc 642
              |||||||||||||||||||||
Sbjct: 148445 agaaccaggggaccgtgcttc 148425



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>gb|AC156548.13| Mus musculus chromosome 5, clone RP23-412C8, complete sequence
          Length = 197890

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 515    tttgtttgtgtgtatacttg 534
              ||||||||||||||||||||
Sbjct: 190678 tttgtttgtgtgtatacttg 190659



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>gb|AY500156.1| Lycopersicon esculentum MAP3Ka mRNA, complete cds
          Length = 1945

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 ttacatcatccaacttgccc 205
           ||||||||||||||||||||
Sbjct: 540 ttacatcatccaacttgccc 521



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>emb|CR938718.3| Pig DNA sequence from clone CH242-2F11, complete sequence
          Length = 170585

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 286    tgctctagcagccaggagct 305
              ||||||||||||||||||||
Sbjct: 158001 tgctctagcagccaggagct 158020



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>gb|AC120122.10| Mus musculus chromosome 10, clone RP23-75O24, complete sequence
          Length = 144972

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    attgggtcattcttcagccc 54
             ||||||||||||||||||||
Sbjct: 76773 attgggtcattcttcagccc 76792



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>gb|AC163219.3| Mus musculus chromosome 5, clone RP24-155K17, complete sequence
          Length = 156494

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 515    tttgtttgtgtgtatacttg 534
              ||||||||||||||||||||
Sbjct: 104302 tttgtttgtgtgtatacttg 104283



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>emb|AL160272.16| Human DNA sequence from clone RP11-336A17 on chromosome 9 Contains the
             TLR4 gene for toll-like receptor 4, the 5' end of a novel
             gene and a CpG island, complete sequence
          Length = 146978

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   tgctctagcagccaggagct 305
             ||||||||||||||||||||
Sbjct: 66353 tgctctagcagccaggagct 66372



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>gb|AC092995.7| Homo sapiens 3 BAC RP11-692L6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 115749

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 514   ctttgtttgtgtgtatactt 533
             ||||||||||||||||||||
Sbjct: 69910 ctttgtttgtgtgtatactt 69929



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>emb|AL160282.18| Human DNA sequence from clone RP11-315I20 on chromosome 1q12.1-21.3,
              complete sequence
          Length = 191594

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 254    ctcctcccggacccggacctgccc 277
              ||||||||||||||||||| ||||
Sbjct: 110390 ctcctcccggacccggacccgccc 110367



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>emb|AL133401.16| Mouse DNA sequence from clone RP21-72L18 on chromosome 5, complete
              sequence
          Length = 158344

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 515    tttgtttgtgtgtatacttg 534
              ||||||||||||||||||||
Sbjct: 140580 tttgtttgtgtgtatacttg 140561



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>emb|AL672023.7| Mouse DNA sequence from clone RP23-339O19 on chromosome X, complete
             sequence
          Length = 160615

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 516   ttgtttgtgtgtatacttgcccat 539
             |||||||||||||||| |||||||
Sbjct: 97146 ttgtttgtgtgtatacgtgcccat 97169


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,796,993
Number of Sequences: 3902068
Number of extensions: 4796993
Number of successful extensions: 83020
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82877
Number of HSP's gapped (non-prelim): 142
length of query: 652
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 629
effective length of database: 17,143,297,704
effective search space: 10783134255816
effective search space used: 10783134255816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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