Clone Name | rbasd13d17 |
---|---|
Clone Library Name | barley_pub |
>gb|AY603974.1| Oryza sativa (indica cultivar-group) BTH-induced protein phosphatase 1 (bipp2C1) mRNA, complete cds Length = 1900 Score = 220 bits (111), Expect = 4e-54 Identities = 399/495 (80%) Strand = Plus / Minus Query: 154 ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 213 ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||| ||||| Sbjct: 1721 ttcagatttccgaacaacggatacaacaactgttacatcatccagcttgcccccagagta 1662 Query: 214 gcccagatagccttctgcgagcgccgcgtccgagaacgggctcctcccggacccggacct 273 |||||||| || |||| || |||||||| ||||| ||||| || | || | || || Sbjct: 1661 acccagatacccaactgcaagagccgcgtcagagaaggggcttctacaggttgccgatct 1602 Query: 274 gcccacctcctttgctctagcagccaggagctcagcaatctccgtaggcttgcggtcagc 333 |||||| ||||| || |||||| |||||| ||| |||||||||| ||||||| || | || Sbjct: 1601 gcccacttccttcgccctagcaaccaggaactccgcaatctccgaaggcttgaggccggc 1542 Query: 334 ttccagagatttcgagacaatagatgccacctcatgatcgtagacgttgtcgaacagacc 393 ||||| ||||| |||| | || ||| | || | || ||||| ||||| || || || Sbjct: 1541 ttccaatgatttggagatgacagctgctatttcttcctcatagacattgtcaaaaaggcc 1482 Query: 394 atccgacgctgtcacaatggcatcgccttcttgtaaatcgatagcgtaattctgtacaag 453 ||| | ||||||||||||||||| |||||||||| ||| || | ||| ||||||||||| Sbjct: 1481 atctgttgctgtcacaatggcatctccttcttgtagatcaattgtgtatttctgtacaag 1422 Query: 454 tcttgaaggatcaacaccgttttctatttgcaacgggaaattgaaaccgtatgtcatcgc 513 | | |||||||| | || || || |||||||| || |||||||| ||||| ||||| | Sbjct: 1421 tttgaaaggatcatcccccttctcaatttgcaagggaaaattgaagccgtaagtcattgg 1362 Query: 514 ctttgtttgtgtgtatacttgcccatttcttatcaccagtaatcccgaatcgccaatatt 573 ||||| || | |||| || || ||||||||||||| ||||| ||||| || ||||| Sbjct: 1361 ctttgatttttgatatatttctccgtttcttatcaccaagaatccagaatcacctatatt 1302 Query: 574 agatacatgaaggacctggccatcaaagtgagcaaccaagacagttgaagaaccagggga 633 | || ||||||| || || |||||||||||||||||||| ||||| |||||||||||||| Sbjct: 1301 acatgcatgaagtacttgaccatcaaagtgagcaaccaaaacagtggaagaaccagggga 1242 Query: 634 ccgtgcttcaactgc 648 ||||||||| |||| Sbjct: 1241 tcgtgcttcatctgc 1227
>dbj|AK068957.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003M17, full insert sequence Length = 2158 Score = 220 bits (111), Expect = 4e-54 Identities = 399/495 (80%) Strand = Plus / Minus Query: 154 ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 213 ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||| ||||| Sbjct: 1971 ttcagatttccgaacaacggatacaacaactgttacatcatccagcttgcccccagagta 1912 Query: 214 gcccagatagccttctgcgagcgccgcgtccgagaacgggctcctcccggacccggacct 273 |||||||| || |||| || |||||||| ||||| ||||| || | || | || || Sbjct: 1911 acccagatacccaactgcaagagccgcgtcagagaaggggcttctacaggttgccgatct 1852 Query: 274 gcccacctcctttgctctagcagccaggagctcagcaatctccgtaggcttgcggtcagc 333 |||||| ||||| || |||||| |||||| ||| |||||||||| ||||||| || | || Sbjct: 1851 gcccacttccttcgccctagcaaccaggaactccgcaatctccgaaggcttgaggccggc 1792 Query: 334 ttccagagatttcgagacaatagatgccacctcatgatcgtagacgttgtcgaacagacc 393 ||||| ||||| |||| | || ||| | || | || ||||| ||||| || || || Sbjct: 1791 ttccaatgatttggagatgacagctgctatttcttcctcatagacattgtcaaaaaggcc 1732 Query: 394 atccgacgctgtcacaatggcatcgccttcttgtaaatcgatagcgtaattctgtacaag 453 ||| | ||||||||||||||||| |||||||||| ||| || | ||| ||||||||||| Sbjct: 1731 atctgttgctgtcacaatggcatctccttcttgtagatcaattgtgtatttctgtacaag 1672 Query: 454 tcttgaaggatcaacaccgttttctatttgcaacgggaaattgaaaccgtatgtcatcgc 513 | | |||||||| | || || || |||||||| || |||||||| ||||| ||||| | Sbjct: 1671 tttgaaaggatcatcccccttctcaatttgcaagggaaaattgaagccgtaagtcattgg 1612 Query: 514 ctttgtttgtgtgtatacttgcccatttcttatcaccagtaatcccgaatcgccaatatt 573 ||||| || | |||| || || ||||||||||||| ||||| ||||| || ||||| Sbjct: 1611 ctttgatttttgatatatttctccgtttcttatcaccaagaatccagaatcacctatatt 1552 Query: 574 agatacatgaaggacctggccatcaaagtgagcaaccaagacagttgaagaaccagggga 633 | || ||||||| || || |||||||||||||||||||| ||||| |||||||||||||| Sbjct: 1551 acatgcatgaagtacttgaccatcaaagtgagcaaccaaaacagtggaagaaccagggga 1492 Query: 634 ccgtgcttcaactgc 648 ||||||||| |||| Sbjct: 1491 tcgtgcttcatctgc 1477
>dbj|AK072473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114B22, full insert sequence Length = 2756 Score = 204 bits (103), Expect = 3e-49 Identities = 388/483 (80%) Strand = Plus / Minus Query: 166 aacaatggacacgacaactgttacatcatccaacttgcccccggagtagcccagatagcc 225 ||||| ||| || ||||||||||||||||||| ||||||||| ||||| |||||||| || Sbjct: 1920 aacaacggatacaacaactgttacatcatccagcttgcccccagagtaacccagataccc 1861 Query: 226 ttctgcgagcgccgcgtccgagaacgggctcctcccggacccggacctgcccacctcctt 285 |||| || |||||||| ||||| ||||| || | || | || |||||||| ||||| Sbjct: 1860 aactgcaagagccgcgtcagagaaggggcttctacaggttgccgatctgcccacttcctt 1801 Query: 286 tgctctagcagccaggagctcagcaatctccgtaggcttgcggtcagcttccagagattt 345 || |||||| |||||| ||| |||||||||| ||||||| || | ||||||| ||||| Sbjct: 1800 cgccctagcaaccaggaactccgcaatctccgaaggcttgaggccggcttccaatgattt 1741 Query: 346 cgagacaatagatgccacctcatgatcgtagacgttgtcgaacagaccatccgacgctgt 405 |||| | || ||| | || | || ||||| ||||| || || ||||| | ||||| Sbjct: 1740 ggagatgacagctgctatttcttcctcatagacattgtcaaaaaggccatctgttgctgt 1681 Query: 406 cacaatggcatcgccttcttgtaaatcgatagcgtaattctgtacaagtcttgaaggatc 465 |||||||||||| |||||||||| ||| || | ||| |||||||||||| | ||||||| Sbjct: 1680 cacaatggcatctccttcttgtagatcaattgtgtatttctgtacaagtttgaaaggatc 1621 Query: 466 aacaccgttttctatttgcaacgggaaattgaaaccgtatgtcatcgcctttgtttgtgt 525 | | || || || |||||||| || |||||||| ||||| ||||| | ||||| || | Sbjct: 1620 atcccccttctcaatttgcaagggaaaattgaagccgtaagtcattggctttgatttttg 1561 Query: 526 gtatacttgcccatttcttatcaccagtaatcccgaatcgccaatattagatacatgaag 585 |||| || || ||||||||||||| ||||| ||||| || |||||| || ||||||| Sbjct: 1560 atatatttctccgtttcttatcaccaagaatccagaatcacctatattacatgcatgaag 1501 Query: 586 gacctggccatcaaagtgagcaaccaagacagttgaagaaccaggggaccgtgcttcaac 645 || || |||||||||||||||||||| ||||| |||||||||||||| ||||||||| | Sbjct: 1500 tacttgaccatcaaagtgagcaaccaaaacagtggaagaaccaggggatcgtgcttcatc 1441 Query: 646 tgc 648 ||| Sbjct: 1440 tgc 1438
>gb|AY107898.1| Zea mays PCO065177 mRNA sequence Length = 1316 Score = 145 bits (73), Expect = 2e-31 Identities = 286/357 (80%) Strand = Plus / Minus Query: 154 ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 213 ||||||||||| |||||| || || ||||| ||||||||||||| |||||| |||||||| Sbjct: 1267 ttcagatttccgaacaatcgatacaacaaccgttacatcatccagcttgccgccggagta 1208 Query: 214 gcccagatagccttctgcgagcgccgcgtccgagaacgggctcctcccggacccggacct 273 |||||| || || | ||||| || | |||||||||||||||||| || |||| ||| Sbjct: 1207 gcccaggtacccagccgcgagagcggagtccgagaacgggctccttccaaacccacaccg 1148 Query: 274 gcccacctcctttgctctagcagccaggagctcagcaatctccgtaggcttgcggtcagc 333 ||||||||||| |||| ||| |||| | || || || ||||| ||||| | ||||| Sbjct: 1147 ccccacctccttcgctcgggcaaccagtaaatcggcgatttccgtgggcttcagatcagc 1088 Query: 334 ttccagagatttcgagacaatagatgccacctcatgatcgtagacgttgtcgaacagacc 393 ||| | ||||||||||| || |||||| || | ||||||||||||||||| ||||| Sbjct: 1087 ttctaatgatttcgagacgatgcctgccacttcttcctcgtagacgttgtcgaaaagacc 1028 Query: 394 atccgacgctgtcacaatggcatcgccttcttgtaaatcgatagcgtaattctgtacaag 453 || |||||||| |||| | | ||||||||||||| | ||| ||||| ||||||||||| Sbjct: 1027 gtctgacgctgttacaacgacgtcgccttcttgtagacagatggcgtatttctgtacaag 968 Query: 454 tcttgaaggatcaacaccgttttctatttgcaacgggaaattgaaaccgtatgtcat 510 | || ||| || | || || || || ||||||||||||||||||||||| ||||| Sbjct: 967 ttttagagggtcgtcgcccttctcaatctgcaacgggaaattgaaaccgtaagtcat 911 Score = 95.6 bits (48), Expect = 2e-16 Identities = 63/68 (92%) Strand = Plus / Minus Query: 581 tgaaggacctggccatcaaagtgagcaaccaagacagttgaagaaccaggggaccgtgct 640 |||||||||| |||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct: 840 tgaaggaccttgccatcaaagtgagcaactaaaacagtggaagaaccaggggaccgtgct 781 Query: 641 tcaactgc 648 ||| |||| Sbjct: 780 tcatctgc 773
>ref|NM_196105.1| Oryza sativa (japonica cultivar-group) putative protein phosphatase 2C (OJ1003C07.6), mRNA Length = 1491 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 536 ccatttcttatcaccagtaatcccgaatcgccaatattagatacatgaaggacctggcca 595 ||||||||||||||||| ||||| || || |||||||| ||| ||| |||| ||||||| Sbjct: 1103 ccatttcttatcaccagaaatccagagtctccaatattcgatgcattgaggaactggcca 1044 Query: 596 tcaaagtgagcaaccaagacagttgaagaaccagg 630 ||||||||||||||||| ||||| ||||||||||| Sbjct: 1043 tcaaagtgagcaaccaaaacagtggaagaaccagg 1009 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 154 ttcagatttcctaacaatggacacgac 180 |||||||||||| |||||||||||||| Sbjct: 1485 ttcagatttcctgacaatggacacgac 1459
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 101 bits (51), Expect = 3e-18 Identities = 135/163 (82%) Strand = Plus / Minus Query: 154 ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 213 ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||| ||||| Sbjct: 4801843 ttcagatttccgaacaacggatacaacaactgttacatcatccagcttgcccccagagta 4801784 Query: 214 gcccagatagccttctgcgagcgccgcgtccgagaacgggctcctcccggacccggacct 273 |||||||| || |||| || |||||||| ||||| ||||| || | || | || || Sbjct: 4801783 acccagatacccaactgcaagagccgcgtcagagaaggggcttctacaggttgccgatct 4801724 Query: 274 gcccacctcctttgctctagcagccaggagctcagcaatctcc 316 |||||| ||||| || |||||| |||||| ||| ||||||||| Sbjct: 4801723 gcccacttccttcgccctagcaaccaggaactccgcaatctcc 4801681 Score = 79.8 bits (40), Expect = 1e-11 Identities = 52/56 (92%) Strand = Plus / Minus Query: 593 ccatcaaagtgagcaaccaagacagttgaagaaccaggggaccgtgcttcaactgc 648 |||||||||||||||||||| ||||| |||||||||||||| ||||||||| |||| Sbjct: 4801108 ccatcaaagtgagcaaccaaaacagtggaagaaccaggggatcgtgcttcatctgc 4801053 Score = 48.1 bits (24), Expect = 0.037 Identities = 27/28 (96%) Strand = Plus / Minus Query: 401 gctgtcacaatggcatcgccttcttgta 428 ||||||||||||||||| |||||||||| Sbjct: 4801489 gctgtcacaatggcatctccttcttgta 4801462 Score = 46.1 bits (23), Expect = 0.14 Identities = 116/147 (78%) Strand = Plus / Minus Query: 445 ctgtacaagtcttgaaggatcaacaccgttttctatttgcaacgggaaattgaaaccgta 504 |||||||||| | |||||||| | || || || |||||||| || |||||||| ||||| Sbjct: 4801344 ctgtacaagtttgaaaggatcatcccccttctcaatttgcaagggaaaattgaagccgta 4801285 Query: 505 tgtcatcgcctttgtttgtgtgtatacttgcccatttcttatcaccagtaatcccgaatc 564 ||||| | ||||| || | |||| || || ||||||||||||| ||||| ||||| Sbjct: 4801284 agtcattggctttgatttttgatatatttctccgtttcttatcaccaagaatccagaatc 4801225 Query: 565 gccaatattagatacatgaaggacctg 591 || |||||| || ||||||| ||||| Sbjct: 4801224 acctatattacatgcatgaagtacctg 4801198
>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0019D17, from chromosome 3, complete sequence Length = 129658 Score = 101 bits (51), Expect = 3e-18 Identities = 135/163 (82%) Strand = Plus / Plus Query: 154 ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 213 ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||| ||||| Sbjct: 33612 ttcagatttccgaacaacggatacaacaactgttacatcatccagcttgcccccagagta 33671 Query: 214 gcccagatagccttctgcgagcgccgcgtccgagaacgggctcctcccggacccggacct 273 |||||||| || |||| || |||||||| ||||| ||||| || | || | || || Sbjct: 33672 acccagatacccaactgcaagagccgcgtcagagaaggggcttctacaggttgccgatct 33731 Query: 274 gcccacctcctttgctctagcagccaggagctcagcaatctcc 316 |||||| ||||| || |||||| |||||| ||| ||||||||| Sbjct: 33732 gcccacttccttcgccctagcaaccaggaactccgcaatctcc 33774 Score = 79.8 bits (40), Expect = 1e-11 Identities = 52/56 (92%) Strand = Plus / Plus Query: 593 ccatcaaagtgagcaaccaagacagttgaagaaccaggggaccgtgcttcaactgc 648 |||||||||||||||||||| ||||| |||||||||||||| ||||||||| |||| Sbjct: 34347 ccatcaaagtgagcaaccaaaacagtggaagaaccaggggatcgtgcttcatctgc 34402 Score = 48.1 bits (24), Expect = 0.037 Identities = 27/28 (96%) Strand = Plus / Plus Query: 401 gctgtcacaatggcatcgccttcttgta 428 ||||||||||||||||| |||||||||| Sbjct: 33966 gctgtcacaatggcatctccttcttgta 33993 Score = 46.1 bits (23), Expect = 0.14 Identities = 116/147 (78%) Strand = Plus / Plus Query: 445 ctgtacaagtcttgaaggatcaacaccgttttctatttgcaacgggaaattgaaaccgta 504 |||||||||| | |||||||| | || || || |||||||| || |||||||| ||||| Sbjct: 34111 ctgtacaagtttgaaaggatcatcccccttctcaatttgcaagggaaaattgaagccgta 34170 Query: 505 tgtcatcgcctttgtttgtgtgtatacttgcccatttcttatcaccagtaatcccgaatc 564 ||||| | ||||| || | |||| || || ||||||||||||| ||||| ||||| Sbjct: 34171 agtcattggctttgatttttgatatatttctccgtttcttatcaccaagaatccagaatc 34230 Query: 565 gccaatattagatacatgaaggacctg 591 || |||||| || ||||||| ||||| Sbjct: 34231 acctatattacatgcatgaagtacctg 34257
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 101 bits (51), Expect = 3e-18 Identities = 135/163 (82%) Strand = Plus / Minus Query: 154 ttcagatttcctaacaatggacacgacaactgttacatcatccaacttgcccccggagta 213 ||||||||||| ||||| ||| || ||||||||||||||||||| ||||||||| ||||| Sbjct: 4801958 ttcagatttccgaacaacggatacaacaactgttacatcatccagcttgcccccagagta 4801899 Query: 214 gcccagatagccttctgcgagcgccgcgtccgagaacgggctcctcccggacccggacct 273 |||||||| || |||| || |||||||| ||||| ||||| || | || | || || Sbjct: 4801898 acccagatacccaactgcaagagccgcgtcagagaaggggcttctacaggttgccgatct 4801839 Query: 274 gcccacctcctttgctctagcagccaggagctcagcaatctcc 316 |||||| ||||| || |||||| |||||| ||| ||||||||| Sbjct: 4801838 gcccacttccttcgccctagcaaccaggaactccgcaatctcc 4801796 Score = 79.8 bits (40), Expect = 1e-11 Identities = 52/56 (92%) Strand = Plus / Minus Query: 593 ccatcaaagtgagcaaccaagacagttgaagaaccaggggaccgtgcttcaactgc 648 |||||||||||||||||||| ||||| |||||||||||||| ||||||||| |||| Sbjct: 4801223 ccatcaaagtgagcaaccaaaacagtggaagaaccaggggatcgtgcttcatctgc 4801168 Score = 48.1 bits (24), Expect = 0.037 Identities = 27/28 (96%) Strand = Plus / Minus Query: 401 gctgtcacaatggcatcgccttcttgta 428 ||||||||||||||||| |||||||||| Sbjct: 4801604 gctgtcacaatggcatctccttcttgta 4801577 Score = 46.1 bits (23), Expect = 0.14 Identities = 116/147 (78%) Strand = Plus / Minus Query: 445 ctgtacaagtcttgaaggatcaacaccgttttctatttgcaacgggaaattgaaaccgta 504 |||||||||| | |||||||| | || || || |||||||| || |||||||| ||||| Sbjct: 4801459 ctgtacaagtttgaaaggatcatcccccttctcaatttgcaagggaaaattgaagccgta 4801400 Query: 505 tgtcatcgcctttgtttgtgtgtatacttgcccatttcttatcaccagtaatcccgaatc 564 ||||| | ||||| || | |||| || || ||||||||||||| ||||| ||||| Sbjct: 4801399 agtcattggctttgatttttgatatatttctccgtttcttatcaccaagaatccagaatc 4801340 Query: 565 gccaatattagatacatgaaggacctg 591 || |||||| || ||||||| ||||| Sbjct: 4801339 acctatattacatgcatgaagtacctg 4801313
>dbj|AK100049.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155A10, full insert sequence Length = 1876 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 536 ccatttcttatcaccagtaatcccgaatcgccaatattagatacatgaaggacctggcca 595 ||||||||||||||||| ||||| || || |||||||| ||| ||| |||| ||||||| Sbjct: 1068 ccatttcttatcaccagaaatccagagtctccaatattcgatgcattgaggaactggcca 1009 Query: 596 tcaaagtgagcaaccaagacagttgaagaaccagg 630 ||||||||||||||||| ||||| ||||||||||| Sbjct: 1008 tcaaagtgagcaaccaaaacagtggaagaaccagg 974 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 154 ttcagatttcctaacaatggacacgac 180 |||||||||||| |||||||||||||| Sbjct: 1450 ttcagatttcctgacaatggacacgac 1424
>dbj|AK071987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091J19, full insert sequence Length = 1857 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 536 ccatttcttatcaccagtaatcccgaatcgccaatattagatacatgaaggacctggcca 595 ||||||||||||||||| ||||| || || |||||||| ||| ||| |||| ||||||| Sbjct: 1129 ccatttcttatcaccagaaatccagagtctccaatattcgatgcattgaggaactggcca 1070 Query: 596 tcaaagtgagcaaccaagacagttgaagaaccagg 630 ||||||||||||||||| ||||| ||||||||||| Sbjct: 1069 tcaaagtgagcaaccaaaacagtggaagaaccagg 1035 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 154 ttcagatttcctaacaatggacacgac 180 |||||||||||| |||||||||||||| Sbjct: 1511 ttcagatttcctgacaatggacacgac 1485
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 77.8 bits (39), Expect = 4e-11 Identities = 52/55 (94%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 35 attgggtcattcttcagcccaa-atgcaagcattcggactcgatccgaatatggc 88 |||||||||||||||||||||| ||||||||||| |||||| ||||||||||||| Sbjct: 431390 attgggtcattcttcagcccaagatgcaagcatttggactccatccgaatatggc 431336
>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1003C07, from chromosome 10, complete sequence Length = 115188 Score = 73.8 bits (37), Expect = 6e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 586 gacctggccatcaaagtgagcaaccaagacagttgaagaaccagg 630 ||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 43930 gacctggccatcaaagtgagcaaccaaaacagtggaagaaccagg 43886 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 154 ttcagatttcctaacaatggacacgac 180 |||||||||||| |||||||||||||| Sbjct: 44642 ttcagatttcctgacaatggacacgac 44616 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 536 ccatttcttatcaccagtaatcccgaatcgccaatatt 573 ||||||||||||||||| ||||| || || |||||||| Sbjct: 44093 ccatttcttatcaccagaaatccagagtctccaatatt 44056
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 73.8 bits (37), Expect = 6e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 586 gacctggccatcaaagtgagcaaccaagacagttgaagaaccagg 630 ||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 11115127 gacctggccatcaaagtgagcaaccaaaacagtggaagaaccagg 11115171 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 154 ttcagatttcctaacaatggacacgac 180 |||||||||||| |||||||||||||| Sbjct: 11114415 ttcagatttcctgacaatggacacgac 11114441 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Plus Query: 536 ccatttcttatcaccagtaatcccgaatcgccaatatt 573 ||||||||||||||||| ||||| || || |||||||| Sbjct: 11114964 ccatttcttatcaccagaaatccagagtctccaatatt 11115001
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 73.8 bits (37), Expect = 6e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 586 gacctggccatcaaagtgagcaaccaagacagttgaagaaccagg 630 ||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 11121567 gacctggccatcaaagtgagcaaccaaaacagtggaagaaccagg 11121611 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 154 ttcagatttcctaacaatggacacgac 180 |||||||||||| |||||||||||||| Sbjct: 11120855 ttcagatttcctgacaatggacacgac 11120881 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Plus Query: 536 ccatttcttatcaccagtaatcccgaatcgccaatatt 573 ||||||||||||||||| ||||| || || |||||||| Sbjct: 11121404 ccatttcttatcaccagaaatccagagtctccaatatt 11121441
>gb|AC119805.6| Mus musculus chromosome 16, clone RP23-144H22, complete sequence Length = 215566 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 515 tttgtttgtgtgtatacttgc 535 ||||||||||||||||||||| Sbjct: 102153 tttgtttgtgtgtatacttgc 102133
>emb|AL035406.25|HS233K16 Human DNA sequence from clone RP1-233K16 on chromosome 1p36.21-36.33 Contains the 5' end of the NPHP4 gene for nephronophthisis 4, the KCNAB2 gene for potassium voltage-gated channel, shaker-related subfamily, beta member 2, the 3' end of the CHD5 gene for chromodomain helicase DNA binding protein 5 and a CpG island, complete sequence Length = 161651 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 622 agaaccaggggaccgtgcttc 642 ||||||||||||||||||||| Sbjct: 148445 agaaccaggggaccgtgcttc 148425
>gb|AC156548.13| Mus musculus chromosome 5, clone RP23-412C8, complete sequence Length = 197890 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 tttgtttgtgtgtatacttg 534 |||||||||||||||||||| Sbjct: 190678 tttgtttgtgtgtatacttg 190659
>gb|AY500156.1| Lycopersicon esculentum MAP3Ka mRNA, complete cds Length = 1945 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ttacatcatccaacttgccc 205 |||||||||||||||||||| Sbjct: 540 ttacatcatccaacttgccc 521
>emb|CR938718.3| Pig DNA sequence from clone CH242-2F11, complete sequence Length = 170585 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 tgctctagcagccaggagct 305 |||||||||||||||||||| Sbjct: 158001 tgctctagcagccaggagct 158020
>gb|AC120122.10| Mus musculus chromosome 10, clone RP23-75O24, complete sequence Length = 144972 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 attgggtcattcttcagccc 54 |||||||||||||||||||| Sbjct: 76773 attgggtcattcttcagccc 76792
>gb|AC163219.3| Mus musculus chromosome 5, clone RP24-155K17, complete sequence Length = 156494 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 tttgtttgtgtgtatacttg 534 |||||||||||||||||||| Sbjct: 104302 tttgtttgtgtgtatacttg 104283
>emb|AL160272.16| Human DNA sequence from clone RP11-336A17 on chromosome 9 Contains the TLR4 gene for toll-like receptor 4, the 5' end of a novel gene and a CpG island, complete sequence Length = 146978 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 tgctctagcagccaggagct 305 |||||||||||||||||||| Sbjct: 66353 tgctctagcagccaggagct 66372
>gb|AC092995.7| Homo sapiens 3 BAC RP11-692L6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115749 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 ctttgtttgtgtgtatactt 533 |||||||||||||||||||| Sbjct: 69910 ctttgtttgtgtgtatactt 69929
>emb|AL160282.18| Human DNA sequence from clone RP11-315I20 on chromosome 1q12.1-21.3, complete sequence Length = 191594 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 254 ctcctcccggacccggacctgccc 277 ||||||||||||||||||| |||| Sbjct: 110390 ctcctcccggacccggacccgccc 110367
>emb|AL133401.16| Mouse DNA sequence from clone RP21-72L18 on chromosome 5, complete sequence Length = 158344 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 tttgtttgtgtgtatacttg 534 |||||||||||||||||||| Sbjct: 140580 tttgtttgtgtgtatacttg 140561
>emb|AL672023.7| Mouse DNA sequence from clone RP23-339O19 on chromosome X, complete sequence Length = 160615 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 516 ttgtttgtgtgtatacttgcccat 539 |||||||||||||||| ||||||| Sbjct: 97146 ttgtttgtgtgtatacgtgcccat 97169 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,796,993 Number of Sequences: 3902068 Number of extensions: 4796993 Number of successful extensions: 83020 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82877 Number of HSP's gapped (non-prelim): 142 length of query: 652 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 629 effective length of database: 17,143,297,704 effective search space: 10783134255816 effective search space used: 10783134255816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)