ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ABIL3_ORYSA (Q5NB83) Probable protein ABIL3 (Abl interactor-like... 31 4.4
2PNMT_MOUSE (P40935) Phenylethanolamine N-methyltransferase (EC 2... 31 4.4
3CH10_LACHE (O68323) 10 kDa chaperonin (Protein Cpn10) (groES pro... 30 5.8
4PHOL_SHIFL (P0A9K6) PhoH-like protein 30 7.6
5PHOL_ECOLI (P0A9K3) PhoH-like protein 30 7.6
6PHOL_ECOL6 (P0A9K4) PhoH-like protein 30 7.6
7PHOL_ECO57 (P0A9K5) PhoH-like protein 30 7.6
8PFDA_THEVO (Q97BC5) Prefoldin alpha subunit (GimC alpha subunit) 30 7.6
9SALM_DROME (P39770) Homeotic protein spalt-major 30 7.6
10YAV8_SCHPO (Q10177) Hypothetical protein C27F1.08 in chromosome I 30 7.6
11PKDRE_MOUSE (Q9Z0T6) Polycystic kidney disease and receptor for ... 30 7.6
12CH103_BRAJA (P35864) 10 kDa chaperonin 3 (Protein Cpn10 3) (groE... 30 9.9

>ABIL3_ORYSA (Q5NB83) Probable protein ABIL3 (Abl interactor-like protein 3)|
          Length = 317

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +2

Query: 119 KQSDLQHRRTPSPSSQNTHHKS 184
           +QS ++  R+PSPS++ THH+S
Sbjct: 191 RQSTMRSARSPSPSARGTHHRS 212



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>PNMT_MOUSE (P40935) Phenylethanolamine N-methyltransferase (EC 2.1.1.28)|
           (PNMTase) (Noradrenaline N-methyltransferase)
          Length = 295

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 516 ATGSPSRPKFVPEHDPPADSGIFSLEDRYPSFESTA 623
           ATGS S PK   E DP +D+G  ++   Y  FE  A
Sbjct: 10  ATGSGSDPKHAAEMDPDSDAGQVAVALAYQRFEPRA 45



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>CH10_LACHE (O68323) 10 kDa chaperonin (Protein Cpn10) (groES protein)|
          Length = 94

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
 Frame = -1

Query: 727 DAETVTAKDASESLADSFIDTVRKLQSNNK---TQGEAAVLSKDGYRSSKEKIPLSAG-- 563
           D   V  KD  E      +     L SN K   T+GE   + +  Y S+ EKIP+S    
Sbjct: 7   DRVIVKVKDEEEKTVGGIV-----LASNAKKKPTEGEVVAVGEGAYASNGEKIPMSVKKG 61

Query: 562 -----GSCSGTNLGLDGD 524
                   SGTN+  +G+
Sbjct: 62  DVVLYDRYSGTNVEYEGE 79



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>PHOL_SHIFL (P0A9K6) PhoH-like protein|
          Length = 359

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 675 LLTL*GSFSQTIRLKERLRCSQRMGIDLPRRRSHYQLEGHAL 550
           LL+L G F   I+  ER     R+GI++ RR +H++L G  +
Sbjct: 31  LLSLCGPFDDNIKQLER-----RLGIEINRRDNHFKLTGRPI 67



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>PHOL_ECOLI (P0A9K3) PhoH-like protein|
          Length = 359

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 675 LLTL*GSFSQTIRLKERLRCSQRMGIDLPRRRSHYQLEGHAL 550
           LL+L G F   I+  ER     R+GI++ RR +H++L G  +
Sbjct: 31  LLSLCGPFDDNIKQLER-----RLGIEINRRDNHFKLTGRPI 67



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>PHOL_ECOL6 (P0A9K4) PhoH-like protein|
          Length = 359

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 675 LLTL*GSFSQTIRLKERLRCSQRMGIDLPRRRSHYQLEGHAL 550
           LL+L G F   I+  ER     R+GI++ RR +H++L G  +
Sbjct: 31  LLSLCGPFDDNIKQLER-----RLGIEINRRDNHFKLTGRPI 67



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>PHOL_ECO57 (P0A9K5) PhoH-like protein|
          Length = 359

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -2

Query: 675 LLTL*GSFSQTIRLKERLRCSQRMGIDLPRRRSHYQLEGHAL 550
           LL+L G F   I+  ER     R+GI++ RR +H++L G  +
Sbjct: 31  LLSLCGPFDDNIKQLER-----RLGIEINRRDNHFKLTGRPI 67



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>PFDA_THEVO (Q97BC5) Prefoldin alpha subunit (GimC alpha subunit)|
          Length = 130

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -1

Query: 691 SLADSFIDTVRKLQSNNKTQGEAAVLSKDGYRSSKEKIPLSAGGSCSGTNLGLDGD 524
           S  D+ ID + K+    + Q    +LS D  R SKE++     G  +  NL LD D
Sbjct: 17  SSVDAQIDAINKMVL--EVQTTIQILSSDELRQSKERLISVGSGIFANGNLDLDSD 70



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>SALM_DROME (P39770) Homeotic protein spalt-major|
          Length = 1365

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 86  EVFNQQNRIRLKQSDLQHRRTPSPSSQNT---HHKSVHIYCQP 205
           E   +Q +++ +   ++ RRTPSPSS++    HH+  H+   P
Sbjct: 643 ERVEEQEQVKQEDHRIEPRRTPSPSSEHRSPHHHRHSHMGYPP 685



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>YAV8_SCHPO (Q10177) Hypothetical protein C27F1.08 in chromosome I|
          Length = 521

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -1

Query: 178 VMCVLAAWRRRPSMLEVALFESNSVLLV 95
           V+ VL AWR   SML V +FE+   LLV
Sbjct: 192 VLLVLIAWRPEGSMLSVRIFETAVALLV 219



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>PKDRE_MOUSE (Q9Z0T6) Polycystic kidney disease and receptor for egg jelly-related|
            protein precursor (PKD and REJ homolog)
          Length = 2126

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 492  VGMWARVEEXXXXXXATNNQRRRRSFSELGWVTTHWLHLILVILM 358
            + M+  + E         N+ RRRSF  L ++ TH++ L L++L+
Sbjct: 1556 LSMYQPITEDKIQILRRENRIRRRSFLFLSYLVTHFIFLTLLLLL 1600



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>CH103_BRAJA (P35864) 10 kDa chaperonin 3 (Protein Cpn10 3) (groES protein 3)|
          Length = 104

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
 Frame = -1

Query: 727 DAETVTAKDASESLADSFI--DTVRKLQSNNKTQGEAAVLSKDGYRSSKEKIPLSAG--- 563
           D   V   DA E  A   I  DT ++  S    QGE   +   G+  S + IP+      
Sbjct: 8   DRVVVKRIDAEEKTAGGIIIPDTAKEKPS----QGEVIAVGPGGHDDSGKLIPIDIEVGD 63

Query: 562 ----GSCSGTNLGLDGDPVAISKAS 500
               G  SGT + +DG  + I K S
Sbjct: 64  RVLFGKWSGTEVKIDGQDLLIMKES 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,610,862
Number of Sequences: 219361
Number of extensions: 2026891
Number of successful extensions: 5467
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5467
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7479594804
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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