ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC136229.3| Oryza sativa (japonica cultivar-group) chromosome... 100 1e-17
2gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome... 100 1e-17
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
4dbj|AK102650.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 1e-17
5dbj|AK100629.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 1e-17
6dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 44 0.64
7gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 44 0.64
8gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 44 0.64
9gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 44 0.64
10dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 44 0.64
11gb|AC123924.4| Mus musculus BAC clone RP24-292A3 from chromosome... 42 2.5
12gb|AC107678.14| Mus musculus chromosome 1, clone RP23-252K18, co... 40 10.0
13gb|AC165346.4| Mus musculus BAC clone RP23-354N5 from chromosome... 40 10.0
14gb|AC132085.3| Mus musculus BAC clone RP24-550M24 from chromosom... 40 10.0
15gb|AC161241.18| Medicago truncatula clone mth2-193c3, complete s... 40 10.0
16gb|AC008581.11| Homo sapiens chromosome 5 clone CTC-564N23, comp... 40 10.0
17emb|Z69707.1|HSCE95B9 Human DNA sequence from clone LL22NC01-95B... 40 10.0
18emb|AL358196.11| Human DNA sequence from clone RP11-596L14 on ch... 40 10.0
19emb|AL158038.10| Human DNA sequence from clone RP11-298H15 on ch... 40 10.0
20gb|AY119599.1| Drosophila melanogaster LD20420 full insert cDNA 40 10.0
21gb|AC145338.7| Pan troglodytes clone rp43-47g15, complete sequence 40 10.0
22gb|AC109473.2| Homo sapiens chromosome 5 clone RP11-3B10, comple... 40 10.0
23ref|NM_132266.1| Drosophila melanogaster CG12081-RA (CG12081), mRNA 40 10.0
24gb|AC099059.2| Homo sapiens chromosome 3 clone RP11-756A10, comp... 40 10.0
25gb|AC154373.2| Mus musculus BAC clone RP23-79I18 from chromosome... 40 10.0
26gb|AC008575.7| Homo sapiens chromosome 5 clone CTC-554D6, comple... 40 10.0
27gb|AC079463.3|AC079463 Homo sapiens chromosome 5 clone CTB-123N6... 40 10.0
28gb|AC090260.13| Homo sapiens chromosome 15, clone RP11-285A1, co... 40 10.0
29gb|AC023743.4| Drosophila melanogaster X BAC RP98-40O10 (Roswell... 40 10.0
30emb|BX088528.7| Zebrafish DNA sequence from clone CH211-226D23 i... 40 10.0
31emb|AL929201.6| Zebrafish DNA sequence from clone CH211-66G24 in... 40 10.0
32emb|AL953910.14| Zebrafish DNA sequence from clone DKEY-31E10 in... 40 10.0
33gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 ... 40 10.0
34emb|CT030635.8| Mouse DNA sequence from clone RP23-94N7 on chrom... 40 10.0
35dbj|AP006699.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 10.0
36gb|AC136500.1| Homo sapiens chromosome 5 clone RP11-56P2, comple... 40 10.0

>gb|AC136229.3| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0690B12,
              complete sequence
          Length = 135323

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 149/182 (81%)
 Strand = Plus / Minus

                                                                          
Query: 263    aaagagcttctgcgccgcaccgttcttccaaacacttcgcacaggcaacccagtttgtag 322
              ||||||||||||  || | || || |||||||||| ||||| |||||||||    ||| |
Sbjct: 134945 aaagagcttctggccccctccatttttccaaacacctcgcataggcaaccctacctgtgg 134886

                                                                          
Query: 323    gacttgtgtctccttttcaggtcgttcagggctcacatcaggatgactaaaatcaagtgt 382
              | |||| |  ||| |||| ||||||||||||||||    |||| |||| |||||||||||
Sbjct: 134885 gccttgcgattccctttctggtcgttcagggctcatggtaggacgactcaaatcaagtgt 134826

                                                                          
Query: 383    agccaatgagttgtcacccaaccgagctctgagaaacttcgacgtcttctttgattgttt 442
              ||| || ||||| ||||| || || |||||||||||||| || |||||||||||||||||
Sbjct: 134825 agctaaggagttatcacctaatcgggctctgagaaactttgatgtcttctttgattgttt 134766

                
Query: 443    gt 444
              ||
Sbjct: 134765 gt 134764



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 92/106 (86%), Gaps = 6/106 (5%)
 Strand = Plus / Minus

                                                                          
Query: 586    ccttggaagatcgatacccatcctttgagagcaccgcagcctctcct---tgagtcttat 642
              ||||||||||||||||||||||| |||| |||||| |||||||||||   ||||||   |
Sbjct: 134628 ccttggaagatcgatacccatcccttgacagcacctcagcctctccttcctgagtc---t 134572

                                                            
Query: 643    tgtttgactgaagcttccttacagtgtcaataaagctatcagctag 688
              ||||| |||||||||||||||||||||| |  |||||||| |||||
Sbjct: 134571 tgtttaactgaagcttccttacagtgtccaggaagctatctgctag 134526



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>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12,
            complete sequence
          Length = 139627

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 149/182 (81%)
 Strand = Plus / Minus

                                                                        
Query: 263  aaagagcttctgcgccgcaccgttcttccaaacacttcgcacaggcaacccagtttgtag 322
            ||||||||||||  || | || || |||||||||| ||||| |||||||||    ||| |
Sbjct: 9886 aaagagcttctggccccctccatttttccaaacacctcgcataggcaaccctacctgtgg 9827

                                                                        
Query: 323  gacttgtgtctccttttcaggtcgttcagggctcacatcaggatgactaaaatcaagtgt 382
            | |||| |  ||| |||| ||||||||||||||||    |||| |||| |||||||||||
Sbjct: 9826 gccttgcgattccctttctggtcgttcagggctcatggtaggacgactcaaatcaagtgt 9767

                                                                        
Query: 383  agccaatgagttgtcacccaaccgagctctgagaaacttcgacgtcttctttgattgttt 442
            ||| || ||||| ||||| || || |||||||||||||| || |||||||||||||||||
Sbjct: 9766 agctaaggagttatcacctaatcgggctctgagaaactttgatgtcttctttgattgttt 9707

              
Query: 443  gt 444
            ||
Sbjct: 9706 gt 9705



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 92/106 (86%), Gaps = 6/106 (5%)
 Strand = Plus / Minus

                                                                        
Query: 586  ccttggaagatcgatacccatcctttgagagcaccgcagcctctcct---tgagtcttat 642
            ||||||||||||||||||||||| |||| |||||| |||||||||||   ||||||   |
Sbjct: 9569 ccttggaagatcgatacccatcccttgacagcacctcagcctctccttcctgagtc---t 9513

                                                          
Query: 643  tgtttgactgaagcttccttacagtgtcaataaagctatcagctag 688
            ||||| |||||||||||||||||||||| |  |||||||| |||||
Sbjct: 9512 tgtttaactgaagcttccttacagtgtccaggaagctatctgctag 9467



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 149/182 (81%)
 Strand = Plus / Minus

                                                                            
Query: 263      aaagagcttctgcgccgcaccgttcttccaaacacttcgcacaggcaacccagtttgtag 322
                ||||||||||||  || | || || |||||||||| ||||| |||||||||    ||| |
Sbjct: 11565451 aaagagcttctggccccctccatttttccaaacacctcgcataggcaaccctacctgtgg 11565392

                                                                            
Query: 323      gacttgtgtctccttttcaggtcgttcagggctcacatcaggatgactaaaatcaagtgt 382
                | |||| |  ||| |||| ||||||||||||||||    |||| |||| |||||||||||
Sbjct: 11565391 gccttgcgattccctttctggtcgttcagggctcatggtaggacgactcaaatcaagtgt 11565332

                                                                            
Query: 383      agccaatgagttgtcacccaaccgagctctgagaaacttcgacgtcttctttgattgttt 442
                ||| || ||||| ||||| || || |||||||||||||| || |||||||||||||||||
Sbjct: 11565331 agctaaggagttatcacctaatcgggctctgagaaactttgatgtcttctttgattgttt 11565272

                  
Query: 443      gt 444
                ||
Sbjct: 11565271 gt 11565270



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 92/106 (86%), Gaps = 6/106 (5%)
 Strand = Plus / Minus

                                                                            
Query: 586      ccttggaagatcgatacccatcctttgagagcaccgcagcctctcct---tgagtcttat 642
                ||||||||||||||||||||||| |||| |||||| |||||||||||   ||||||   |
Sbjct: 11565134 ccttggaagatcgatacccatcccttgacagcacctcagcctctccttcctgagtc---t 11565078

                                                              
Query: 643      tgtttgactgaagcttccttacagtgtcaataaagctatcagctag 688
                ||||| |||||||||||||||||||||| |  |||||||| |||||
Sbjct: 11565077 tgtttaactgaagcttccttacagtgtccaggaagctatctgctag 11565032



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>dbj|AK102650.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101B01, full
            insert sequence
          Length = 3311

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 149/182 (81%)
 Strand = Plus / Minus

                                                                        
Query: 263  aaagagcttctgcgccgcaccgttcttccaaacacttcgcacaggcaacccagtttgtag 322
            ||||||||||||  || | || || |||||||||| ||||| |||||||||    ||| |
Sbjct: 2750 aaagagcttctggccccctccatttttccaaacacctcgcataggcaaccctacctgtgg 2691

                                                                        
Query: 323  gacttgtgtctccttttcaggtcgttcagggctcacatcaggatgactaaaatcaagtgt 382
            | |||| |  ||| |||| ||||||||||||||||    |||| |||| |||||||||||
Sbjct: 2690 gccttgcgattccctttctggtcgttcagggctcatggtaggacgactcaaatcaagtgt 2631

                                                                        
Query: 383  agccaatgagttgtcacccaaccgagctctgagaaacttcgacgtcttctttgattgttt 442
            ||| || ||||| ||||| || || |||||||||||||| || |||||||||||||||||
Sbjct: 2630 agctaaggagttatcacctaatcgggctctgagaaactttgatgtcttctttgattgttt 2571

              
Query: 443  gt 444
            ||
Sbjct: 2570 gt 2569



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 92/106 (86%), Gaps = 6/106 (5%)
 Strand = Plus / Minus

                                                                        
Query: 586  ccttggaagatcgatacccatcctttgagagcaccgcagcctctcct---tgagtcttat 642
            ||||||||||||||||||||||| |||| |||||| |||||||||||   ||||||   |
Sbjct: 2433 ccttggaagatcgatacccatcccttgacagcacctcagcctctccttcctgagtc---t 2377

                                                          
Query: 643  tgtttgactgaagcttccttacagtgtcaataaagctatcagctag 688
            ||||| |||||||||||||||||||||| |  |||||||| |||||
Sbjct: 2376 tgtttaactgaagcttccttacagtgtccaggaagctatctgctag 2331



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>dbj|AK100629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109C14, full
            insert sequence
          Length = 3137

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 149/182 (81%)
 Strand = Plus / Minus

                                                                        
Query: 263  aaagagcttctgcgccgcaccgttcttccaaacacttcgcacaggcaacccagtttgtag 322
            ||||||||||||  || | || || |||||||||| ||||| |||||||||    ||| |
Sbjct: 2702 aaagagcttctggccccctccatttttccaaacacctcgcataggcaaccctacctgtgg 2643

                                                                        
Query: 323  gacttgtgtctccttttcaggtcgttcagggctcacatcaggatgactaaaatcaagtgt 382
            | |||| |  ||| |||| ||||||||||||||||    |||| |||| |||||||||||
Sbjct: 2642 gccttgcgattccctttctggtcgttcagggctcatggtaggacgactcaaatcaagtgt 2583

                                                                        
Query: 383  agccaatgagttgtcacccaaccgagctctgagaaacttcgacgtcttctttgattgttt 442
            ||| || ||||| ||||| || || |||||||||||||| || |||||||||||||||||
Sbjct: 2582 agctaaggagttatcacctaatcgggctctgagaaactttgatgtcttctttgattgttt 2523

              
Query: 443  gt 444
            ||
Sbjct: 2522 gt 2521



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 92/106 (86%), Gaps = 6/106 (5%)
 Strand = Plus / Minus

                                                                        
Query: 586  ccttggaagatcgatacccatcctttgagagcaccgcagcctctcct---tgagtcttat 642
            ||||||||||||||||||||||| |||| |||||| |||||||||||   ||||||   |
Sbjct: 2385 ccttggaagatcgatacccatcccttgacagcacctcagcctctccttcctgagtc---t 2329

                                                          
Query: 643  tgtttgactgaagcttccttacagtgtcaataaagctatcagctag 688
            ||||| |||||||||||||||||||||| |  |||||||| |||||
Sbjct: 2328 tgtttaactgaagcttccttacagtgtccaggaagctatctgctag 2283



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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 208     tcaatggatcaaattacgtctgcacaaaat 237
               |||||||| |||||||| ||||||||||||
Sbjct: 1189518 tcaatggaacaaattacttctgcacaaaat 1189547



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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 208     tcaatggatcaaattacgtctgcacaaaat 237
               |||||||| |||||||| ||||||||||||
Sbjct: 1154421 tcaatggaacaaattacttctgcacaaaat 1154450



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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 208     tcaatggatcaaattacgtctgcacaaaat 237
               |||||||| |||||||| ||||||||||||
Sbjct: 1050759 tcaatggaacaaattacttctgcacaaaat 1050788



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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 208     tcaatggatcaaattacgtctgcacaaaat 237
               |||||||| |||||||| ||||||||||||
Sbjct: 1130883 tcaatggaacaaattacttctgcacaaaat 1130912



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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 208     tcaatggatcaaattacgtctgcacaaaat 237
               |||||||| |||||||| ||||||||||||
Sbjct: 1113190 tcaatggaacaaattacttctgcacaaaat 1113219



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>gb|AC123924.4| Mus musculus BAC clone RP24-292A3 from chromosome 16, complete sequence
          Length = 159639

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 237    tgatgctatttcttttcattgctgg 261
              |||||||||| ||||||||||||||
Sbjct: 106741 tgatgctattgcttttcattgctgg 106765



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>gb|AC107678.14| Mus musculus chromosome 1, clone RP23-252K18, complete sequence
          Length = 169766

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    caggatgactaaaatcaagt 380
              ||||||||||||||||||||
Sbjct: 140522 caggatgactaaaatcaagt 140541



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>gb|AC165346.4| Mus musculus BAC clone RP23-354N5 from chromosome 13, complete sequence
          Length = 233740

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   accgttcttccaaacacttc 300
             ||||||||||||||||||||
Sbjct: 48244 accgttcttccaaacacttc 48225



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>gb|AC132085.3| Mus musculus BAC clone RP24-550M24 from chromosome 13, complete sequence
          Length = 150362

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    accgttcttccaaacacttc 300
              ||||||||||||||||||||
Sbjct: 136870 accgttcttccaaacacttc 136851



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>gb|AC161241.18| Medicago truncatula clone mth2-193c3, complete sequence
          Length = 125129

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    tcctcacttttgaggttttc 94
             ||||||||||||||||||||
Sbjct: 90566 tcctcacttttgaggttttc 90547



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>gb|AC008581.11| Homo sapiens chromosome 5 clone CTC-564N23, complete sequence
          Length = 198564

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 229    gcacaaaatgatgctatttctttt 252
              |||||||||||| |||||||||||
Sbjct: 176551 gcacaaaatgatactatttctttt 176528



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>emb|Z69707.1|HSCE95B9 Human DNA sequence from clone LL22NC01-95B9 on chromosome 22,
            complete sequence
          Length = 30829

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 245  tttcttttcattgctggaaa 264
            ||||||||||||||||||||
Sbjct: 9862 tttcttttcattgctggaaa 9843



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>emb|AL358196.11| Human DNA sequence from clone RP11-596L14 on chromosome 10, complete
             sequence
          Length = 71225

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     agaattatgtaatatacagt 25
             ||||||||||||||||||||
Sbjct: 33547 agaattatgtaatatacagt 33528



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>emb|AL158038.10| Human DNA sequence from clone RP11-298H15 on chromosome 13q21.1-21.3,
             complete sequence
          Length = 160015

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 159   gcagccaaaacacacatcacaaaa 182
             ||||||||||||||||| ||||||
Sbjct: 50750 gcagccaaaacacacatgacaaaa 50727



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>gb|AY119599.1| Drosophila melanogaster LD20420 full insert cDNA
          Length = 1905

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 155 ccaagcagccaaaacacaca 174
           ||||||||||||||||||||
Sbjct: 217 ccaagcagccaaaacacaca 198



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>gb|AC145338.7| Pan troglodytes clone rp43-47g15, complete sequence
          Length = 202653

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    tttcttttcattgctggaaa 264
              ||||||||||||||||||||
Sbjct: 101711 tttcttttcattgctggaaa 101692



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>gb|AC109473.2| Homo sapiens chromosome 5 clone RP11-3B10, complete sequence
          Length = 170363

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   cacaaaatgatgctatttct 249
             ||||||||||||||||||||
Sbjct: 57264 cacaaaatgatgctatttct 57283



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>ref|NM_132266.1| Drosophila melanogaster CG12081-RA (CG12081), mRNA
          Length = 1887

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 155 ccaagcagccaaaacacaca 174
           ||||||||||||||||||||
Sbjct: 217 ccaagcagccaaaacacaca 198



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>gb|AC099059.2| Homo sapiens chromosome 3 clone RP11-756A10, complete sequence
          Length = 158576

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 159    gcagccaaaacacacatcacaaaa 182
              ||||||||||||||||| ||||||
Sbjct: 130991 gcagccaaaacacacatgacaaaa 130968



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>gb|AC154373.2| Mus musculus BAC clone RP23-79I18 from chromosome 9, complete sequence
          Length = 225286

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   aaaatgatgctatttctttt 252
             ||||||||||||||||||||
Sbjct: 45832 aaaatgatgctatttctttt 45851



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>gb|AC008575.7| Homo sapiens chromosome 5 clone CTC-554D6, complete sequence
          Length = 168285

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   cacaaaatgatgctatttct 249
             ||||||||||||||||||||
Sbjct: 30949 cacaaaatgatgctatttct 30930



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>gb|AC079463.3|AC079463 Homo sapiens chromosome 5 clone CTB-123N6, complete sequence
          Length = 106514

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   cacaaaatgatgctatttct 249
             ||||||||||||||||||||
Sbjct: 72866 cacaaaatgatgctatttct 72885



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>gb|AC090260.13| Homo sapiens chromosome 15, clone RP11-285A1, complete sequence
          Length = 207206

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    tctccaagcagccaaaacac 171
              ||||||||||||||||||||
Sbjct: 106879 tctccaagcagccaaaacac 106860



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>gb|AC023743.4| Drosophila melanogaster X BAC RP98-40O10 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 185405

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   ccaagcagccaaaacacaca 174
             ||||||||||||||||||||
Sbjct: 56718 ccaagcagccaaaacacaca 56699



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>emb|BX088528.7| Zebrafish DNA sequence from clone CH211-226D23 in linkage group 1,
             complete sequence
          Length = 171618

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   atgatgctatttcttttcat 255
             ||||||||||||||||||||
Sbjct: 93814 atgatgctatttcttttcat 93795



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>emb|AL929201.6| Zebrafish DNA sequence from clone CH211-66G24 in linkage group 8,
              complete sequence
          Length = 186121

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 165    aaaacacacatcacaaaagtgtgc 188
              |||||||||| |||||||||||||
Sbjct: 129233 aaaacacacaacacaaaagtgtgc 129210



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>emb|AL953910.14| Zebrafish DNA sequence from clone DKEY-31E10 in linkage group 1, complete
              sequence
          Length = 190793

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    atgatgctatttcttttcat 255
              ||||||||||||||||||||
Sbjct: 119989 atgatgctatttcttttcat 119970



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>gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 of 74 of the complete
              sequence
          Length = 299633

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    ccaagcagccaaaacacaca 174
              ||||||||||||||||||||
Sbjct: 173763 ccaagcagccaaaacacaca 173744



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>emb|CT030635.8| Mouse DNA sequence from clone RP23-94N7 on chromosome 9, complete
             sequence
          Length = 228508

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   aaaatgatgctatttctttt 252
             ||||||||||||||||||||
Sbjct: 79251 aaaatgatgctatttctttt 79232



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>dbj|AP006699.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01N23, TM0490,
             complete sequence
          Length = 110636

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 580   tcttctccttggaagatcga 599
             ||||||||||||||||||||
Sbjct: 68803 tcttctccttggaagatcga 68784



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>gb|AC136500.1| Homo sapiens chromosome 5 clone RP11-56P2, complete sequence
          Length = 183967

 Score = 40.1 bits (20), Expect = 10.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   cacaaaatgatgctatttct 249
             ||||||||||||||||||||
Sbjct: 47435 cacaaaatgatgctatttct 47454


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,053,353
Number of Sequences: 3902068
Number of extensions: 6053353
Number of successful extensions: 113716
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113513
Number of HSP's gapped (non-prelim): 193
length of query: 727
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 704
effective length of database: 17,143,297,704
effective search space: 12068881583616
effective search space used: 12068881583616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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