ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106086.1| Zea mays PCO132371 mRNA sequence 218 2e-53
2ref|XM_470584.1| Oryza sativa (japonica cultivar-group), predic... 167 6e-38
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 115 2e-22
4gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome... 115 2e-22
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
6dbj|AK067353.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 3e-15
7ref|XM_470583.1| Oryza sativa (japonica cultivar-group), predic... 70 1e-08
8ref|XM_508413.1| PREDICTED: Pan troglodytes similar to PSMC3 pro... 42 2.4
9gb|AC139314.4| Medicago truncatula clone mth2-24j7, complete seq... 42 2.4
10emb|AL954187.5| Zebrafish DNA sequence from clone CH211-69P5 in ... 42 2.4
11emb|CT030485.1| Xenopus tropicalis finished cDNA, clone TGas023o21 40 9.3
12gb|AC108850.3| Mus musculus chromosome 1, clone RP24-85N11, comp... 40 9.3
13emb|X62771.1|XLAEIIIM X.laevis AE-III mRNA for peptidyl hydroxyg... 40 9.3
14gb|AC161383.5| Mus musculus BAC clone RP23-68C13 from chromosome... 40 9.3
15emb|AL662853.16| Mouse DNA sequence from clone RP23-293J16 on ch... 40 9.3
16gb|DP000062.1| Sus scrofa target 117 genomic scaffold 40 9.3
17gb|AC090621.10| Homo sapiens chromosome 18, clone RP11-396N11, c... 40 9.3
18gb|AC125310.5| Mus musculus BAC clone RP24-548E5 from chromosome... 40 9.3
19dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
20gb|AC126690.5| Mus musculus BAC clone RP23-189K24 from chromosom... 40 9.3
21emb|AL662983.3|OSJN00181 Oryza sativa genomic DNA, chromosome 4,... 40 9.3
22emb|AL671854.14| Mouse DNA sequence from clone RP23-89M15 on chr... 40 9.3 
>gb|AY106086.1| Zea mays PCO132371 mRNA sequence
          Length = 1240

 Score =  218 bits (110), Expect = 2e-53
 Identities = 386/478 (80%)
 Strand = Plus / Minus

                                                                       
Query: 162 tgcccttgtgtgcagttagacacccttccactgcttcgcctactgtcaggaaaatccagt 221
           ||||||| || |||| ||||||  | ||||| ||||| |||||||||| ||| |||||||
Sbjct: 921 tgcccttatgagcagctagacaggcctccaccgcttcacctactgtcatgaagatccagt 862

                                                                       
Query: 222 cttctcctattctgtcaacaacgtgtgccagcttcatcttctgaattgcctgccatcctg 281
           | | |||||  ||||| || || |||| ||  ||||||||||||| ||||| |||||| |
Sbjct: 861 cctgtcctaccctgtccaccacctgtgacactttcatcttctgaactgccttccatcccg 802

                                                                       
Query: 282 gactagcaatagccatctgtatgcccagagacgcaagctccttgtggatttcctccaacc 341
           |||| || ||||||||||||| ||| |||||| | | ||||||||| ||||| ||||   
Sbjct: 801 gactggctatagccatctgtaagccaagagacaccaactccttgtgtatttcttccagtg 742

                                                                       
Query: 342 ccacaagtcctgaagtgtcaatgttcaccacgtttgacatgtcaaggacaactgattgca 401
           |    |||||||||||||| ||||| |||||  ||||||| ||||||||||||| ||| |
Sbjct: 741 cagtgagtcctgaagtgtcgatgtttaccacacttgacatatcaaggacaactgcttgta 682

                                                                       
Query: 402 ccctttccctgaccttctcattggatgtgtccacttctgcccttacccattccatgatcc 461
            ||| |||||  | ||  |||| || || |||||| || |||  ||||| ||  ||||||
Sbjct: 681 tcctctccctcgcttttccatttgaggtctccactccttcccaaacccactctgtgatcc 622

                                                                       
Query: 462 tttctttgatgaaagttgcattggtgaagcagaggaaggacgtatcgatgcgtatgactt 521
           ||||||||| | |||| || ||| |||||||||||||||| || |||| ||||||     
Sbjct: 621 tttctttgacggaagtggcgttgatgaagcagaggaaggatgtgtcgacgcgtataggca 562

                                                                       
Query: 522 gtacggccggtgtccggcacgccacagggtactgcctgacgctgcagaagatgtttgttc 581
           |||| | ||| ||  |||| || ||||||||||||||||||||||||||||| | ||| |
Sbjct: 561 gtacagtcggagttaggcaggctacagggtactgcctgacgctgcagaagatatctgtcc 502

                                                                     
Query: 582 cttgtagcctgcctagaacctccacctgaggccggagtgactggatgatgatctttgc 639
           ||||||||||||| || | ||||||||||||||| || ||||| ||||||||||||||
Sbjct: 501 cttgtagcctgccaaggatctccacctgaggccgaagcgactgtatgatgatctttgc 444
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>ref|XM_470584.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1983

 Score =  167 bits (84), Expect = 6e-38
 Identities = 189/224 (84%)
 Strand = Plus / Minus

                                                                        
Query: 254  ttcatcttctgaattgcctgccatcctggactagcaatagccatctgtatgcccagagac 313
            ||||||||||| || || ||||||||||| |  ||||| |||||||||||||  ||||| 
Sbjct: 1874 ttcatcttctggatcgcttgccatcctgggccggcaatggccatctgtatgctaagagat 1815

                                                                        
Query: 314  gcaagctccttgtggatttcctccaaccccacaagtcctgaagtgtcaatgttcaccacg 373
            || ||||||||||| || || |||||  ||  ||  ||||||||||||||||| ||||| 
Sbjct: 1814 gccagctccttgtgtatctcttccaaggccgaaatccctgaagtgtcaatgtttaccaca 1755

                                                                        
Query: 374  tttgacatgtcaaggacaactgattgcaccctttccctgaccttctcattggatgtgtcc 433
            |||||||||||||||||||| ||||||||||| |||||| |||||||||  || || || 
Sbjct: 1754 tttgacatgtcaaggacaacagattgcaccctctccctggccttctcatcagacgtctcg 1695

                                                        
Query: 434  acttctgcccttacccattccatgatcctttctttgatgaaagt 477
            |||||| | | || |||||| |||||||||||||||||||||||
Sbjct: 1694 acttcttctcgtatccattcgatgatcctttctttgatgaaagt 1651



 Score =  131 bits (66), Expect = 3e-27
 Identities = 123/142 (86%)
 Strand = Plus / Minus

                                                                        
Query: 534  tccggcacgccacagggtactgcctgacgctgcagaagatgtttgttccttgtagcctgc 593
            ||||||| || ||||||||||| |||| |||||||||||||||||| || || ||||| |
Sbjct: 1594 tccggcaagcaacagggtactgtctgatgctgcagaagatgtttgtcccctgaagcctac 1535

                                                                        
Query: 594  ctagaacctccacctgaggccggagtgactggatgatgatctttgcaaacgatatggcaa 653
            | |||||||| ||||||||||||| |||||| ||||||||||| ||||| || ||||| |
Sbjct: 1534 caagaacctctacctgaggccggattgactgtatgatgatcttggcaaaggagatggcga 1475

                                  
Query: 654  gcgcgactccgaggccgatctc 675
            |||| ||  |||||||||||||
Sbjct: 1474 gcgctacggcgaggccgatctc 1453
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  115 bits (58), Expect = 2e-22
 Identities = 103/118 (87%)
 Strand = Plus / Plus

                                                                           
Query: 534     tccggcacgccacagggtactgcctgacgctgcagaagatgtttgttccttgtagcctgc 593
               ||||||| || ||||||||||| |||| |||||||||||||||||| || || ||||| |
Sbjct: 4923385 tccggcaagcaacagggtactgtctgatgctgcagaagatgtttgtcccctgaagcctac 4923444

                                                                         
Query: 594     ctagaacctccacctgaggccggagtgactggatgatgatctttgcaaacgatatggc 651
               | |||||||| ||||||||||||| |||||| ||||||||||| ||||| || |||||
Sbjct: 4923445 caagaacctctacctgaggccggattgactgtatgatgatcttggcaaaggagatggc 4923502



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                               
Query: 375     ttgacatgtcaaggacaactgattgcaccctttccctgaccttctcat 422
               ||||||||||||||||||| ||||||||||| |||||| |||||||||
Sbjct: 4923145 ttgacatgtcaaggacaacagattgcaccctctccctggccttctcat 4923192



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                           
Query: 302     atgcccagagacgcaagctccttgtggatttcctccaaccccacaagtcctgaagtgtca 361
               ||||| ||| |||| ||||||||||| | ||| |||| | ||||||| |||||||| || 
Sbjct: 4915300 atgccgagacacgccagctccttgtgcagttcttccagcgccacaagacctgaagtatcc 4915359

                          
Query: 362     atgttcaccac 372
               ||||| |||||
Sbjct: 4915360 atgtttaccac 4915370
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>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0064E16, complete sequence
          Length = 159092

 Score =  115 bits (58), Expect = 2e-22
 Identities = 103/118 (87%)
 Strand = Plus / Minus

                                                                         
Query: 534   tccggcacgccacagggtactgcctgacgctgcagaagatgtttgttccttgtagcctgc 593
             ||||||| || ||||||||||| |||| |||||||||||||||||| || || ||||| |
Sbjct: 72162 tccggcaagcaacagggtactgtctgatgctgcagaagatgtttgtcccctgaagcctac 72103

                                                                       
Query: 594   ctagaacctccacctgaggccggagtgactggatgatgatctttgcaaacgatatggc 651
             | |||||||| ||||||||||||| |||||| ||||||||||| ||||| || |||||
Sbjct: 72102 caagaacctctacctgaggccggattgactgtatgatgatcttggcaaaggagatggc 72045



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                             
Query: 375   ttgacatgtcaaggacaactgattgcaccctttccctgaccttctcat 422
             ||||||||||||||||||| ||||||||||| |||||| |||||||||
Sbjct: 72402 ttgacatgtcaaggacaacagattgcaccctctccctggccttctcat 72355



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                         
Query: 302   atgcccagagacgcaagctccttgtggatttcctccaaccccacaagtcctgaagtgtca 361
             ||||| ||| |||| ||||||||||| | ||| |||| | ||||||| |||||||| || 
Sbjct: 80247 atgccgagacacgccagctccttgtgcagttcttccagcgccacaagacctgaagtatcc 80188

                        
Query: 362   atgttcaccac 372
             ||||| |||||
Sbjct: 80187 atgtttaccac 80177
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  115 bits (58), Expect = 2e-22
 Identities = 103/118 (87%)
 Strand = Plus / Plus

                                                                           
Query: 534     tccggcacgccacagggtactgcctgacgctgcagaagatgtttgttccttgtagcctgc 593
               ||||||| || ||||||||||| |||| |||||||||||||||||| || || ||||| |
Sbjct: 4922600 tccggcaagcaacagggtactgtctgatgctgcagaagatgtttgtcccctgaagcctac 4922659

                                                                         
Query: 594     ctagaacctccacctgaggccggagtgactggatgatgatctttgcaaacgatatggc 651
               | |||||||| ||||||||||||| |||||| ||||||||||| ||||| || |||||
Sbjct: 4922660 caagaacctctacctgaggccggattgactgtatgatgatcttggcaaaggagatggc 4922717



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                               
Query: 375     ttgacatgtcaaggacaactgattgcaccctttccctgaccttctcat 422
               ||||||||||||||||||| ||||||||||| |||||| |||||||||
Sbjct: 4922360 ttgacatgtcaaggacaacagattgcaccctctccctggccttctcat 4922407



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                           
Query: 302     atgcccagagacgcaagctccttgtggatttcctccaaccccacaagtcctgaagtgtca 361
               ||||| ||| |||| ||||||||||| | ||| |||| | ||||||| |||||||| || 
Sbjct: 4914515 atgccgagacacgccagctccttgtgcagttcttccagcgccacaagacctgaagtatcc 4914574

                          
Query: 362     atgttcaccac 372
               ||||| |||||
Sbjct: 4914575 atgtttaccac 4914585
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>dbj|AK067353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100L12, full
            insert sequence
          Length = 2422

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 118/142 (83%)
 Strand = Plus / Minus

                                                                        
Query: 246  gtgccagcttcatcttctgaattgcctgccatcctggactagcaatagccatctgtatgc 305
            ||||||| |||||||| || ||  |||||||||| ||  | || ||||||||||| ||||
Sbjct: 1953 gtgccagtttcatcttgtggatcacctgccatccaggcttggctatagccatctggatgc 1894

                                                                        
Query: 306  ccagagacgcaagctccttgtggatttcctccaaccccacaagtcctgaagtgtcaatgt 365
            | ||| |||| ||||||||||| | ||| |||| | ||||||| |||||||| || ||||
Sbjct: 1893 cgagacacgccagctccttgtgcagttcttccagcgccacaagacctgaagtatccatgt 1834

                                  
Query: 366  tcaccacgtttgacatgtcaag 387
            | ||||| ||||||||||||||
Sbjct: 1833 ttaccacatttgacatgtcaag 1812



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 444  ttacccattccatgatcctttctttgatg 472
            |||||||| |||||||| |||||||||||
Sbjct: 1779 ttacccatcccatgatcttttctttgatg 1751
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>ref|XM_470583.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1941

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                        
Query: 297  tctgtatgcccagagacgcaagctccttgtggatttcctccaaccccacaagtcctgaag 356
            |||| ||||| ||| |||| ||||||||||| | ||| |||| | ||||||| |||||||
Sbjct: 1696 tctggatgccgagacacgccagctccttgtgcagttcttccagcgccacaagacctgaag 1637

                                           
Query: 357  tgtcaatgttcaccacgtttgacatgtcaag 387
            | || ||||| ||||| ||||||||||||||
Sbjct: 1636 tatccatgtttaccacatttgacatgtcaag 1606



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 444  ttacccattccatgatcctttctttgatg 472
            |||||||| |||||||| |||||||||||
Sbjct: 1573 ttacccatcccatgatcttttctttgatg 1545
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>ref|XM_508413.1| PREDICTED: Pan troglodytes similar to PSMC3 protein (LOC451172),
           mRNA
          Length = 2865

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 146 caacactccatagcactgccc 166
           |||||||||||||||||||||
Sbjct: 860 caacactccatagcactgccc 840
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>gb|AC139314.4| Medicago truncatula clone mth2-24j7, complete sequence
          Length = 32785

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 455   atgatcctttctttgatgaaa 475
             |||||||||||||||||||||
Sbjct: 20977 atgatcctttctttgatgaaa 20957
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>emb|AL954187.5| Zebrafish DNA sequence from clone CH211-69P5 in linkage group 15,
              complete sequence
          Length = 185137

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 189    ccactgcttcgcctactgtca 209
              |||||||||||||||||||||
Sbjct: 159894 ccactgcttcgcctactgtca 159874
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>emb|CT030485.1| Xenopus tropicalis finished cDNA, clone TGas023o21
          Length = 4309

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 481  attggtgaagcagaggaagg 500
            ||||||||||||||||||||
Sbjct: 3303 attggtgaagcagaggaagg 3284
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>gb|AC108850.3| Mus musculus chromosome 1, clone RP24-85N11, complete sequence
          Length = 194889

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   gaaaatccagtcttctccta 230
             ||||||||||||||||||||
Sbjct: 71518 gaaaatccagtcttctccta 71499
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>emb|X62771.1|XLAEIIIM X.laevis AE-III mRNA for peptidyl hydroxyglycine N-C lyase
          Length = 3618

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 481  attggtgaagcagaggaagg 500
            ||||||||||||||||||||
Sbjct: 3311 attggtgaagcagaggaagg 3292
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>gb|AC161383.5| Mus musculus BAC clone RP23-68C13 from chromosome 14, complete sequence
          Length = 195954

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 566    cagaagatgtttgttccttg 585
              ||||||||||||||||||||
Sbjct: 114437 cagaagatgtttgttccttg 114456
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>emb|AL662853.16| Mouse DNA sequence from clone RP23-293J16 on chromosome 11 Contains the
              Kremen gene for kringle containing transmembrane protein,
              the 3' end of a novel gene and a CpG island, complete
              sequence
          Length = 198703

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 204    ctgtcaggaaaatccagtct 223
              ||||||||||||||||||||
Sbjct: 143442 ctgtcaggaaaatccagtct 143461
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>gb|DP000062.1| Sus scrofa target 117 genomic scaffold
          Length = 605739

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    gtgtgccagcttcatcttct 263
              ||||||||||||||||||||
Sbjct: 309697 gtgtgccagcttcatcttct 309716
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>gb|AC090621.10| Homo sapiens chromosome 18, clone RP11-396N11, complete sequence
          Length = 188858

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   cttctgcccttacccattcc 454
             ||||||||||||||||||||
Sbjct: 30923 cttctgcccttacccattcc 30904
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>gb|AC125310.5| Mus musculus BAC clone RP24-548E5 from chromosome 1, complete sequence
          Length = 223534

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   gaaaatccagtcttctccta 230
             ||||||||||||||||||||
Sbjct: 64208 gaaaatccagtcttctccta 64227
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 526      ggccggtgtccggcacgcca 545
                ||||||||||||||||||||
Sbjct: 17618328 ggccggtgtccggcacgcca 17618347
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>gb|AC126690.5| Mus musculus BAC clone RP23-189K24 from chromosome 14, complete
           sequence
          Length = 212894

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 566 cagaagatgtttgttccttg 585
           ||||||||||||||||||||
Sbjct: 934 cagaagatgtttgttccttg 953
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>emb|AL662983.3|OSJN00181 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081G05,
             complete sequence
          Length = 173950

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 526   ggccggtgtccggcacgcca 545
             ||||||||||||||||||||
Sbjct: 99067 ggccggtgtccggcacgcca 99086
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>emb|AL671854.14| Mouse DNA sequence from clone RP23-89M15 on chromosome 3, complete
              sequence
          Length = 207265

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 402    ccctttccctgaccttctca 421
              ||||||||||||||||||||
Sbjct: 143339 ccctttccctgaccttctca 143358


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,555,963
Number of Sequences: 3902068
Number of extensions: 5555963
Number of successful extensions: 102891
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102736
Number of HSP's gapped (non-prelim): 154
length of query: 680
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 657
effective length of database: 17,143,297,704
effective search space: 11263146591528
effective search space used: 11263146591528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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