Clone Name | rbasd13c21 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | STSYN_PEA (Q93XK2) Stachyose synthase precursor (EC 2.4.1.67) (G... | 90 | 7e-18 | 2 | ZFHX2_HUMAN (Q9C0A1) Zinc finger homeobox protein 2 | 32 | 1.4 | 3 | STRN_HUMAN (O43815) Striatin | 31 | 3.1 | 4 | Y2316_MYCBO (P63503) Putative aminotransferase Mb2316 (EC 2.6.1.-) | 31 | 4.1 | 5 | Y2294_MYCTU (P63502) Putative aminotransferase Rv2294/MT2351 (EC... | 31 | 4.1 | 6 | ARVC_MOUSE (P98203) Armadillo repeat protein deleted in velo-car... | 30 | 5.3 |
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>STSYN_PEA (Q93XK2) Stachyose synthase precursor (EC 2.4.1.67)| (Galactinol--raffinose galactosyltransferase) Length = 853 Score = 89.7 bits (221), Expect = 7e-18 Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 4/184 (2%) Frame = -2 Query: 692 LKIWNXNNLSAAVGVFNCQGAGNWTWLVEEISHVPTT---VNITGHLSPSDVESLEEITG 522 LKIWN N +G FNCQGAG W ++++ P + T H++ + + EE + Sbjct: 659 LKIWNFNKYGGVIGAFNCQGAG-WDPIMQKFRGFPECYKPIPGTVHVTEVEWDQKEETSH 717 Query: 521 DDWNGETAVYAFNSCSLSRLQ-KHQSLELSLVTMACEIYTISPIQVYGGAVGFAPLGLLN 345 E VY + LS + K + ++ ++ E+Y+ P+ G + FAP+GL N Sbjct: 718 LGKAEEYVVYLNQAEELSLMTLKSEPIQFTIQPSTFELYSFVPVTKLCGGIKFAPIGLTN 777 Query: 344 MFNSGGALDSIRCTVDSSATTVQIKCRGPGRFGAYSSARPALCRVDANEVEFSHSDDGLL 165 MFNSGG + + + + +IK +G G F AYSS P +++ EV+F DG L Sbjct: 778 MFNSGGTVIDLEYVGNGA----KIKVKGGGSFLAYSSESPKKFQLNGCEVDFEWLGDGKL 833 Query: 164 AFDL 153 ++ Sbjct: 834 CVNV 837
>ZFHX2_HUMAN (Q9C0A1) Zinc finger homeobox protein 2| Length = 1427 Score = 32.3 bits (72), Expect = 1.4 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Frame = -2 Query: 404 ISPIQVYGGAVGFAPLGLLNMFNSGGALDSIRCTVDSSA--TTVQIKCRGPGR 252 ++P+ + G A+ PLG L FNSG A S + +S TT ++ GPGR Sbjct: 1078 LAPVLLSGPALAQPPLGNLAPFNSGPAASSGLLGLATSVLPTTTVVQTAGPGR 1130
>STRN_HUMAN (O43815) Striatin| Length = 780 Score = 31.2 bits (69), Expect = 3.1 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Frame = -2 Query: 692 LKIWNXNNLSAAVGVFNCQGAGNWTWLVEEISHVPTTVNIT---GHLSPSDVESLEEITG 522 L++WN ++ A+ VFN V+ +S P+ + + G+ S ++E+ + I Sbjct: 593 LRLWNTTEVAPALSVFNDIKELGIPASVDLVSSDPSHMVASFSKGYTSIFNMETQQRILT 652 Query: 521 DDWNGETAVYAFNSCSLSRLQKHQSLELSL 432 + N +T A +SC ++R+ H +L +S+ Sbjct: 653 LESNVDTT--ANSSCQINRVISHPTLSISI 680
>Y2316_MYCBO (P63503) Putative aminotransferase Mb2316 (EC 2.6.1.-)| Length = 407 Score = 30.8 bits (68), Expect = 4.1 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -2 Query: 689 KIWNXNNLSAAVGVFNCQGAGNWTWLVEEISHVPTTVNITGH 564 K WN L AA+ + + A + + EE+ H P+ + + H Sbjct: 237 KAWNLGGLKAALAIAGREAAADLARMPEEVGHGPSHLGVIAH 278
>Y2294_MYCTU (P63502) Putative aminotransferase Rv2294/MT2351 (EC 2.6.1.-)| Length = 407 Score = 30.8 bits (68), Expect = 4.1 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -2 Query: 689 KIWNXNNLSAAVGVFNCQGAGNWTWLVEEISHVPTTVNITGH 564 K WN L AA+ + + A + + EE+ H P+ + + H Sbjct: 237 KAWNLGGLKAALAIAGREAAADLARMPEEVGHGPSHLGVIAH 278
>ARVC_MOUSE (P98203) Armadillo repeat protein deleted in velo-cardio-facial| syndrome homolog Length = 962 Score = 30.4 bits (67), Expect = 5.3 Identities = 12/22 (54%), Positives = 12/22 (54%) Frame = -2 Query: 680 NXNNLSAAVGVFNCQGAGNWTW 615 N N L AA G AGNWTW Sbjct: 677 NFNTLEAAAGALQNLSAGNWTW 698 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,593,842 Number of Sequences: 219361 Number of extensions: 2279835 Number of successful extensions: 5646 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 5447 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5643 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)