ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13c21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STSYN_PEA (Q93XK2) Stachyose synthase precursor (EC 2.4.1.67) (G... 90 7e-18
2ZFHX2_HUMAN (Q9C0A1) Zinc finger homeobox protein 2 32 1.4
3STRN_HUMAN (O43815) Striatin 31 3.1
4Y2316_MYCBO (P63503) Putative aminotransferase Mb2316 (EC 2.6.1.-) 31 4.1
5Y2294_MYCTU (P63502) Putative aminotransferase Rv2294/MT2351 (EC... 31 4.1
6ARVC_MOUSE (P98203) Armadillo repeat protein deleted in velo-car... 30 5.3

>STSYN_PEA (Q93XK2) Stachyose synthase precursor (EC 2.4.1.67)|
            (Galactinol--raffinose galactosyltransferase)
          Length = 853

 Score = 89.7 bits (221), Expect = 7e-18
 Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 4/184 (2%)
 Frame = -2

Query: 692  LKIWNXNNLSAAVGVFNCQGAGNWTWLVEEISHVPTT---VNITGHLSPSDVESLEEITG 522
            LKIWN N     +G FNCQGAG W  ++++    P     +  T H++  + +  EE + 
Sbjct: 659  LKIWNFNKYGGVIGAFNCQGAG-WDPIMQKFRGFPECYKPIPGTVHVTEVEWDQKEETSH 717

Query: 521  DDWNGETAVYAFNSCSLSRLQ-KHQSLELSLVTMACEIYTISPIQVYGGAVGFAPLGLLN 345
                 E  VY   +  LS +  K + ++ ++     E+Y+  P+    G + FAP+GL N
Sbjct: 718  LGKAEEYVVYLNQAEELSLMTLKSEPIQFTIQPSTFELYSFVPVTKLCGGIKFAPIGLTN 777

Query: 344  MFNSGGALDSIRCTVDSSATTVQIKCRGPGRFGAYSSARPALCRVDANEVEFSHSDDGLL 165
            MFNSGG +  +    + +    +IK +G G F AYSS  P   +++  EV+F    DG L
Sbjct: 778  MFNSGGTVIDLEYVGNGA----KIKVKGGGSFLAYSSESPKKFQLNGCEVDFEWLGDGKL 833

Query: 164  AFDL 153
              ++
Sbjct: 834  CVNV 837



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>ZFHX2_HUMAN (Q9C0A1) Zinc finger homeobox protein 2|
          Length = 1427

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -2

Query: 404  ISPIQVYGGAVGFAPLGLLNMFNSGGALDSIRCTVDSSA--TTVQIKCRGPGR 252
            ++P+ + G A+   PLG L  FNSG A  S    + +S   TT  ++  GPGR
Sbjct: 1078 LAPVLLSGPALAQPPLGNLAPFNSGPAASSGLLGLATSVLPTTTVVQTAGPGR 1130



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>STRN_HUMAN (O43815) Striatin|
          Length = 780

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
 Frame = -2

Query: 692 LKIWNXNNLSAAVGVFNCQGAGNWTWLVEEISHVPTTVNIT---GHLSPSDVESLEEITG 522
           L++WN   ++ A+ VFN          V+ +S  P+ +  +   G+ S  ++E+ + I  
Sbjct: 593 LRLWNTTEVAPALSVFNDIKELGIPASVDLVSSDPSHMVASFSKGYTSIFNMETQQRILT 652

Query: 521 DDWNGETAVYAFNSCSLSRLQKHQSLELSL 432
            + N +T   A +SC ++R+  H +L +S+
Sbjct: 653 LESNVDTT--ANSSCQINRVISHPTLSISI 680



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>Y2316_MYCBO (P63503) Putative aminotransferase Mb2316 (EC 2.6.1.-)|
          Length = 407

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 689 KIWNXNNLSAAVGVFNCQGAGNWTWLVEEISHVPTTVNITGH 564
           K WN   L AA+ +   + A +   + EE+ H P+ + +  H
Sbjct: 237 KAWNLGGLKAALAIAGREAAADLARMPEEVGHGPSHLGVIAH 278



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>Y2294_MYCTU (P63502) Putative aminotransferase Rv2294/MT2351 (EC 2.6.1.-)|
          Length = 407

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 689 KIWNXNNLSAAVGVFNCQGAGNWTWLVEEISHVPTTVNITGH 564
           K WN   L AA+ +   + A +   + EE+ H P+ + +  H
Sbjct: 237 KAWNLGGLKAALAIAGREAAADLARMPEEVGHGPSHLGVIAH 278



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>ARVC_MOUSE (P98203) Armadillo repeat protein deleted in velo-cardio-facial|
           syndrome homolog
          Length = 962

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 680 NXNNLSAAVGVFNCQGAGNWTW 615
           N N L AA G      AGNWTW
Sbjct: 677 NFNTLEAAAGALQNLSAGNWTW 698


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,593,842
Number of Sequences: 219361
Number of extensions: 2279835
Number of successful extensions: 5646
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5643
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6856295237
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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