ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13c17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APX1_ORYSA (P93404) L-ascorbate peroxidase 1, cytosolic (EC 1.11... 33 0.27
2APX1_PEA (P48534) L-ascorbate peroxidase, cytosolic (EC 1.11.1.1... 32 0.60
3APX2_ORYSA (Q9FE01) L-ascorbate peroxidase 2, cytosolic (EC 1.11... 30 1.8
4APX1_ARATH (Q05431) L-ascorbate peroxidase, cytosolic (EC 1.11.1... 30 2.3

>APX1_ORYSA (P93404) L-ascorbate peroxidase 1, cytosolic (EC 1.11.1.11) (APXa)|
          Length = 249

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = -3

Query: 186 DYKEAHLRLSELGXAEA 136
           DYKEAHL+LSELG A+A
Sbjct: 233 DYKEAHLKLSELGFADA 249



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>APX1_PEA (P48534) L-ascorbate peroxidase, cytosolic (EC 1.11.1.11) (AP)|
          Length = 249

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = -3

Query: 186 DYKEAHLRLSELGXAEA 136
           DY EAHL+LSELG AEA
Sbjct: 233 DYAEAHLKLSELGFAEA 249



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>APX2_ORYSA (Q9FE01) L-ascorbate peroxidase 2, cytosolic (EC 1.11.1.11) (APXb)|
          Length = 251

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -3

Query: 186 DYKEAHLRLSELGXAE 139
           DY EAHL+LSELG AE
Sbjct: 235 DYAEAHLKLSELGFAE 250



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>APX1_ARATH (Q05431) L-ascorbate peroxidase, cytosolic (EC 1.11.1.11) (AP)|
          Length = 249

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -3

Query: 186 DYKEAHLRLSELGXAEA 136
           DY EAH++LSELG A+A
Sbjct: 233 DYAEAHMKLSELGFADA 249


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,764,098
Number of Sequences: 219361
Number of extensions: 201931
Number of successful extensions: 506
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 80,573,946
effective HSP length: 38
effective length of database: 72,238,228
effective search space used: 1733717472
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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