Clone Information

BLAST Search Result

Clone Name	rbasd13c17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ006358.1\|HVU6 Hordeum vulgare mRNA for ascorbate peroxidase	321	4e-85
2	gb\|AF411227.1\|AF411227 Hordeum vulgare ascorbate peroxidase mRNA...	313	1e-82
3	gb\|AY254495.1\| Oryza sativa (indica cultivar-group) ascorbate pe...	76	4e-11
4	dbj\|AK061841.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	76	4e-11
5	dbj\|D45423.1\| Rice mRNA for ascorbate peroxidase, complete cds	76	4e-11
6	ref\|XM_470658.1\| Oryza sativa (japonica cultivar-group), predic...	72	7e-10
7	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	64	2e-07
8	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	64	2e-07
9	gb\|AC134232.2\| Oryza sativa (japonica cultivar-group) chromosome...	64	2e-07
10	gb\|BT017015.1\| Zea mays clone EK07D2311G04.c mRNA sequence	56	4e-05
11	gb\|BT016458.1\| Zea mays clone Contig291 mRNA sequence	56	4e-05
12	emb\|CR762439.7\| Zebrafish DNA sequence from clone DKEY-261I20 in...	44	0.15
13	gb\|AC079363.19\| Homo sapiens 12q BAC RP11-617J18 (Roswell Park C...	44	0.15
14	ref\|XM_602502.2\| PREDICTED: Bos taurus similar to Zinc finger pr...	42	0.59
15	gb\|AC123711.14\| Mus musculus chromosome 3, clone RP23-378N16, co...	42	0.59
16	ref\|XM_545874.2\| PREDICTED: Canis familiaris similar to Zinc fin...	42	0.59
17	emb\|AL591212.11\| Human DNA sequence from clone RP11-236P24 on ch...	42	0.59
18	gb\|AC069158.6\| Genomic Sequence for Oryza sativa, Nipponbare str...	42	0.59
19	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	0.59
20	dbj\|AP004153.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	0.59
21	gb\|AC138320.12\| Mus musculus chromosome 5, clone RP23-181I1, com...	40	2.3
22	gb\|AC119151.1\| Homo sapiens chromosome 5 clone CTD-2582L22, comp...	40	2.3
23	gb\|AC106794.3\| Homo sapiens chromosome 5 clone RP11-419C19, comp...	40	2.3
24	gb\|AC104799.4\| Homo sapiens BAC clone RP11-345F13 from 2, comple...	40	2.3
25	emb\|BX813309.2\| Mouse DNA sequence from clone RP23-450P5 on chro...	40	2.3
26	ref\|XM_631010.1\| Dictyostelium discoideum hypothetical protein (...	38	9.3
27	ref\|XM_629342.1\| Dictyostelium discoideum hypothetical protein (...	38	9.3
28	ref\|XM_446626.1\| Candida glabrata CBS138, CAGL0G06072g partial mRNA	38	9.3
29	gb\|AF548661.1\| Homo sapiens general transcription factor IIH, po...	38	9.3
30	emb\|AL590112.5\| Human DNA sequence from clone RP11-238F10 on chr...	38	9.3
31	ref\|XM_501544.1\| Yarrowia lipolytica CLIB122, YALI0C07128g predi...	38	9.3
32	emb\|AL355485.9\| Human DNA sequence from clone RP11-240M20 on chr...	38	9.3
33	ref\|XM_962414.1\| PREDICTED: Tribolium castaneum similar to CG477...	38	9.3
34	emb\|CR380953.1\| Candida glabrata strain CBS138 chromosome G comp...	38	9.3
35	emb\|BX927401.14\| Zebrafish DNA sequence from clone CH211-210H11 ...	38	9.3
36	gb\|AC097359.2\| Homo sapiens chromosome 3 clone RP11-259K5, compl...	38	9.3
37	gb\|AC105177.5\| Homo sapiens chromosome 8, clone RP11-91D24, comp...	38	9.3
38	emb\|BX276188.11\| Zebrafish DNA sequence from clone CH211-245A19,...	38	9.3
39	gb\|AC117503.8\| Homo sapiens 12 BAC RP11-338K17 (Roswell Park Can...	38	9.3
40	gb\|AC114802.5\| Homo sapiens BAC clone RP11-790N8 from 2, complet...	38	9.3
41	gb\|AC136290.2\| Homo sapiens chromosome 3 clone CTD-2104B13, comp...	38	9.3
42	emb\|BX005239.8\| Zebrafish DNA sequence from clone CH211-144F7 in...	38	9.3
43	emb\|BX005015.5\| Zebrafish DNA sequence from clone CH211-66I11 in...	38	9.3
44	dbj\|AK099750.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	38	9.3
45	dbj\|AK109045.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	38	9.3
46	emb\|CR847530.19\| Zebrafish DNA sequence from clone DKEY-14I17 in...	38	9.3
47	emb\|BX927161.7\| Zebrafish DNA sequence from clone DKEY-181G6 in ...	38	9.3
48	emb\|AL132718.5\|CNS01DTG Human chromosome 14 DNA sequence BAC R-6...	38	9.3
49	dbj\|AB052736.1\| Escherichia coli genes, complete cds, strain:B171	38	9.3
50	gb\|AC118029.11\| Mus musculus chromosome 9, clone RP23-465I17, co...	38	9.3
51	dbj\|AP006190.1\| Homo sapiens genomic DNA, chromosome 3, clone:RP...	38	9.3
52	gb\|AY864674.1\| Escherichia coli strain 9717 putative type III se...	38	9.3
53	gb\|AY864673.1\| Escherichia coli serotype O157 putative type III ...	38	9.3
54	emb\|AL929424.7\| Mouse DNA sequence from clone RP23-24F19 on chro...	38	9.3
55	emb\|CR382129.1\| Yarrowia lipolytica chromosome C of strain CLIB1...	38	9.3
56	dbj\|AP005368.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	38	9.3
57	gb\|M25281.1\|PALHISH2H3 P.lividus histone H3 and H2A genes, compl...	38	9.3
58	gb\|DQ077151.1\| Escherichia coli strain 789 EprK (eprK) gene, com...	38	9.3

>emb|AJ006358.1|HVU6 Hordeum vulgare mRNA for ascorbate peroxidase
          Length = 1050

 Score =  321 bits (162), Expect = 4e-85
 Identities = 184/189 (97%), Gaps = 2/189 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggcctcaagcca-caaacattattacagagatgattacttagcagtctgcactgctca 59
           |||||||||||||| |||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 958 atggcctcaagccaacaaacattattacagagatgattacttagcagtctgcgg-gctca 900

                                                                       
Query: 60  cactgacccctagtctagacgcagaacaagatcaccctggtcgcgcatagtagcagcagt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 cactgacccctagtctagacgcagaacaagatcaccctggtcgcgcatagtagcagcagt 840

                                                                       
Query: 120 agtagacacgctcttaggcttcagcgnaccccagttcggagagcctgaggtgtgcctcct 179
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 839 agtagacacgctcttaggcttcagcgtaccccagttcggagagcctgaggtgtgcctcct 780

                    
Query: 180 tgtagtcct 188
           |||||||||
Sbjct: 779 tgtagtcct 771

to top

>gb|AF411227.1|AF411227 Hordeum vulgare ascorbate peroxidase mRNA, partial cds
          Length = 676

 Score =  313 bits (158), Expect = 1e-82
 Identities = 183/189 (96%), Gaps = 2/189 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggcctcaagcca-caaacattattacagagatgattacttagcagtctgcactgctca 59
           |||||||||||||| |||||||||||||||||||||||||||||||||||||   | |||
Sbjct: 595 atggcctcaagccaacaaacattattacagagatgattacttagcagtctgcgg-gttca 537

                                                                       
Query: 60  cactgacccctagtctagacgcagaacaagatcaccctggtcgcgcatagtagcagcagt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cactgacccctagtctagacgcagaacaagatcaccctggtcgcgcatagtagcagcagt 477

                                                                       
Query: 120 agtagacacgctcttaggcttcagcgnaccccagttcggagagcctgaggtgtgcctcct 179
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 476 agtagacacgctcttaggcttcagcgtaccccagttcggagagcctgaggtgtgcctcct 417

                    
Query: 180 tgtagtcct 188
           |||||||||
Sbjct: 416 tgtagtcct 408

to top

>gb|AY254495.1| Oryza sativa (indica cultivar-group) ascorbate peroxidase mRNA,
           complete cds
          Length = 806

 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                    
Query: 130 ctcttaggcttcagcgnaccccagttcggagagcctgaggtgtgcctccttgtagtc 186
           |||||| || |||||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 769 ctcttaagcatcagcgaaccccagttcggagagcttgaggtgggcctccttgtagtc 713

to top

>dbj|AK061841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-E04, full
           insert sequence
          Length = 1070

 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                    
Query: 130 ctcttaggcttcagcgnaccccagttcggagagcctgaggtgtgcctccttgtagtc 186
           |||||| || |||||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 821 ctcttaagcatcagcgaaccccagttcggagagcttgaggtgggcctccttgtagtc 765

to top

>dbj|D45423.1| Rice mRNA for ascorbate peroxidase, complete cds
          Length = 983

 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                    
Query: 130 ctcttaggcttcagcgnaccccagttcggagagcctgaggtgtgcctccttgtagtc 186
           |||||| || |||||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 795 ctcttaagcatcagcgaaccccagttcggagagcttgaggtgggcctccttgtagtc 739

to top

>ref|XM_470658.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 753

 Score = 71.9 bits (36), Expect = 7e-10
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                          
Query: 140 tcagcgnaccccagttcggagagcctgaggtgtgcctccttgtagtc 186
           |||||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 746 tcagcgaaccccagttcggagagcttgaggtgggcctccttgtagtc 700

to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                       
Query: 147     accccagttcggagagcctgaggtgtgcctccttgtagtc 186
               ||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 9818303 accccagttcggagagcttgaggtgggcctccttgtagtc 9818264

to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                       
Query: 147     accccagttcggagagcctgaggtgtgcctccttgtagtc 186
               ||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 9816424 accccagttcggagagcttgaggtgggcctccttgtagtc 9816385

to top

>gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0013D02, complete sequence
          Length = 131883

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                     
Query: 147   accccagttcggagagcctgaggtgtgcctccttgtagtc 186
             ||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 56194 accccagttcggagagcttgaggtgggcctccttgtagtc 56233

to top

>gb|BT017015.1| Zea mays clone EK07D2311G04.c mRNA sequence
          Length = 1097

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 147 accccagttcggagagcctgaggtgtgcctccttgtagtc 186
           ||||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 814 accccagttcggagagcttgaggtgggcctctttgtagtc 775

to top

>gb|BT016458.1| Zea mays clone Contig291 mRNA sequence
          Length = 1269

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 147 accccagttcggagagcctgaggtgtgcctccttgtagtc 186
           ||||||||||||||||| ||||||| ||||| ||||||||
Sbjct: 830 accccagttcggagagcttgaggtgggcctctttgtagtc 791

to top

>emb|CR762439.7| Zebrafish DNA sequence from clone DKEY-261I20 in linkage group 13,
             complete sequence
          Length = 136285

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 13    cacaaacattattacagagatgatta 38
             |||||| |||||||||||||||||||
Sbjct: 31006 cacaaagattattacagagatgatta 30981

to top

>gb|AC079363.19| Homo sapiens 12q BAC RP11-617J18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 193741

 Score = 44.1 bits (22), Expect = 0.15
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 106    atagtagcagcagtagtagaca 127
              ||||||||||||||||||||||
Sbjct: 193247 atagtagcagcagtagtagaca 193268

to top

>ref|XM_602502.2| PREDICTED: Bos taurus similar to Zinc finger protein basonuclin 1
           (LOC524182), mRNA
          Length = 3283

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 46  gtctgcactgctcacactgac 66
           |||||||||||||||||||||
Sbjct: 232 gtctgcactgctcacactgac 212

to top

>gb|AC123711.14| Mus musculus chromosome 3, clone RP23-378N16, complete sequence
          Length = 209168

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 18    acattattacagagatgatta 38
             |||||||||||||||||||||
Sbjct: 82386 acattattacagagatgatta 82406

to top

>ref|XM_545874.2| PREDICTED: Canis familiaris similar to Zinc finger protein
           basonuclin 1 (LOC488756), mRNA
          Length = 4508

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 46  gtctgcactgctcacactgac 66
           |||||||||||||||||||||
Sbjct: 148 gtctgcactgctcacactgac 128

to top

>emb|AL591212.11| Human DNA sequence from clone RP11-236P24 on chromosome X Contains
            the 5' end of a novel gene, a novel gene, a ribosomal
            protein L27 (RPL27) pseudogene and a CpG island, complete
            sequence
          Length = 25233

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 104  gcatagtagcagcagtagtag 124
            |||||||||||||||||||||
Sbjct: 2503 gcatagtagcagcagtagtag 2483

to top

>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0049O12, from chromosome 2, complete sequence
          Length = 155154

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 104   gcatagtagcagcagtagtag 124
             |||||||||||||||||||||
Sbjct: 78755 gcatagtagcagcagtagtag 78735

to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 104      gcatagtagcagcagtagtag 124
                |||||||||||||||||||||
Sbjct: 34426444 gcatagtagcagcagtagtag 34426464

to top

>dbj|AP004153.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1111_C07
          Length = 115190

 Score = 42.1 bits (21), Expect = 0.59
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 104   gcatagtagcagcagtagtag 124
             |||||||||||||||||||||
Sbjct: 42686 gcatagtagcagcagtagtag 42706

to top

>gb|AC138320.12| Mus musculus chromosome 5, clone RP23-181I1, complete sequence
          Length = 230584

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 105    catagtagcagcagtagtagacac 128
              |||||||| |||||||||||||||
Sbjct: 121918 catagtagtagcagtagtagacac 121895

to top

>gb|AC119151.1| Homo sapiens chromosome 5 clone CTD-2582L22, complete sequence
          Length = 176204

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     attattacagagatgattac 39
              ||||||||||||||||||||
Sbjct: 104467 attattacagagatgattac 104448

to top

>gb|AC106794.3| Homo sapiens chromosome 5 clone RP11-419C19, complete sequence
          Length = 200581

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     attattacagagatgattac 39
              ||||||||||||||||||||
Sbjct: 180088 attattacagagatgattac 180069

to top

>gb|AC104799.4| Homo sapiens BAC clone RP11-345F13 from 2, complete sequence
          Length = 159933

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    cttagcagtctgcactgctc 58
             ||||||||||||||||||||
Sbjct: 25849 cttagcagtctgcactgctc 25830

to top

>emb|BX813309.2| Mouse DNA sequence from clone RP23-450P5 on chromosome 2, complete
             sequence
          Length = 118443

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 17    aacattattacagagatgattacttagc 44
             |||||||||||| || ||||||||||||
Sbjct: 55488 aacattattacaaaggtgattacttagc 55461

to top

>ref|XM_631010.1| Dictyostelium discoideum hypothetical protein (DDB0188565), partial
            mRNA
          Length = 1719

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 106  atagtagcagcagtagtag 124
            |||||||||||||||||||
Sbjct: 1205 atagtagcagcagtagtag 1223

to top

>ref|XM_629342.1| Dictyostelium discoideum hypothetical protein (DDB0191797), partial
            mRNA
          Length = 6618

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 107  tagtagcagcagtagtaga 125
            |||||||||||||||||||
Sbjct: 1470 tagtagcagcagtagtaga 1488

to top

>ref|XM_446626.1| Candida glabrata CBS138, CAGL0G06072g partial mRNA
          Length = 1347

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 50  gcactgctcacactgaccc 68
           |||||||||||||||||||
Sbjct: 626 gcactgctcacactgaccc 608

to top

>gb|AF548661.1| Homo sapiens general transcription factor IIH, polypeptide 3, 34kDa
             (GTF2H3) gene, complete cds
          Length = 28881

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 30    agatgattacttagcagtctgca 52
             |||||||||||||||| ||||||
Sbjct: 21798 agatgattacttagcattctgca 21776

to top

>emb|AL590112.5| Human DNA sequence from clone RP11-238F10 on chromosome 1, complete
             sequence
          Length = 35120

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 29    gagatgattacttagcagt 47
             |||||||||||||||||||
Sbjct: 15937 gagatgattacttagcagt 15955

to top

>ref|XM_501544.1| Yarrowia lipolytica CLIB122, YALI0C07128g predicted mRNA
          Length = 1662

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 84  aacaagatcaccctggtcg 102
           |||||||||||||||||||
Sbjct: 750 aacaagatcaccctggtcg 732

to top

>emb|AL355485.9| Human DNA sequence from clone RP11-240M20 on chromosome 13, complete
            sequence
          Length = 149684

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 14   acaaacattattacagaga 32
            |||||||||||||||||||
Sbjct: 5946 acaaacattattacagaga 5964

to top

>ref|XM_962414.1| PREDICTED: Tribolium castaneum similar to CG4778-PA (LOC655852),
           mRNA
          Length = 867

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 106 atagtagcagcagtagtag 124
           |||||||||||||||||||
Sbjct: 230 atagtagcagcagtagtag 248



 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 106 atagtagcagcagtagtag 124
           |||||||||||||||||||
Sbjct: 83  atagtagcagcagtagtag 101

to top

>emb|CR380953.1| Candida glabrata strain CBS138 chromosome G complete sequence
          Length = 992211

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 50     gcactgctcacactgaccc 68
              |||||||||||||||||||
Sbjct: 582411 gcactgctcacactgaccc 582429

to top

>emb|BX927401.14| Zebrafish DNA sequence from clone CH211-210H11 in linkage group 19,
             complete sequence
          Length = 137958

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 1     atggcctcaagccacaaacatta 23
             |||| ||||||||||||||||||
Sbjct: 46433 atggactcaagccacaaacatta 46411

to top

>gb|AC097359.2| Homo sapiens chromosome 3 clone RP11-259K5, complete sequence
          Length = 187127

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 106    atagtagcagcagtagtag 124
              |||||||||||||||||||
Sbjct: 122842 atagtagcagcagtagtag 122824

to top

>gb|AC105177.5| Homo sapiens chromosome 8, clone RP11-91D24, complete sequence
          Length = 149126

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 53    ctgctcacactgaccccta 71
             |||||||||||||||||||
Sbjct: 45596 ctgctcacactgaccccta 45614

to top

>emb|BX276188.11| Zebrafish DNA sequence from clone CH211-245A19, complete sequence
          Length = 177660

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 106   atagtagcagcagtagtag 124
             |||||||||||||||||||
Sbjct: 86814 atagtagcagcagtagtag 86796

to top

>gb|AC117503.8| Homo sapiens 12 BAC RP11-338K17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 218476

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 30     agatgattacttagcagtctgca 52
              |||||||||||||||| ||||||
Sbjct: 172427 agatgattacttagcattctgca 172449

to top

>gb|AC114802.5| Homo sapiens BAC clone RP11-790N8 from 2, complete sequence
          Length = 154814

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 11     gccacaaacattattacag 29
              |||||||||||||||||||
Sbjct: 143609 gccacaaacattattacag 143591

to top

>gb|AC136290.2| Homo sapiens chromosome 3 clone CTD-2104B13, complete sequence
          Length = 136961

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 106    atagtagcagcagtagtag 124
              |||||||||||||||||||
Sbjct: 126347 atagtagcagcagtagtag 126365

to top

>emb|BX005239.8| Zebrafish DNA sequence from clone CH211-144F7 in linkage group 18,
             complete sequence
          Length = 168745

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    aaacattattacagagatg 34
             |||||||||||||||||||
Sbjct: 24445 aaacattattacagagatg 24427

to top

>emb|BX005015.5| Zebrafish DNA sequence from clone CH211-66I11 in linkage group 9,
             complete sequence
          Length = 172283

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 106   atagtagcagcagtagtag 124
             |||||||||||||||||||
Sbjct: 36609 atagtagcagcagtagtag 36591

to top

>dbj|AK099750.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092A18, full
            insert sequence
          Length = 2418

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 51   cactgctcacactgacccc 69
            |||||||||||||||||||
Sbjct: 1303 cactgctcacactgacccc 1285

to top

>dbj|AK109045.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-D07, full
            insert sequence
          Length = 1370

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 90   atcaccctggtcgcgcatagtagcagc 116
            ||||||||||||| |||||| ||||||
Sbjct: 1205 atcaccctggtcgtgcatagcagcagc 1179

to top

>emb|CR847530.19| Zebrafish DNA sequence from clone DKEY-14I17 in linkage group 20,
              complete sequence
          Length = 144640

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 106    atagtagcagcagtagtag 124
              |||||||||||||||||||
Sbjct: 134911 atagtagcagcagtagtag 134893

to top

>emb|BX927161.7| Zebrafish DNA sequence from clone DKEY-181G6 in linkage group 19,
              complete sequence
          Length = 129477

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 107    tagtagcagcagtagtaga 125
              |||||||||||||||||||
Sbjct: 100250 tagtagcagcagtagtaga 100268

to top

>emb|AL132718.5|CNS01DTG Human chromosome 14 DNA sequence BAC R-626P14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 183009

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 82    agaacaagatcaccctggt 100
             |||||||||||||||||||
Sbjct: 24942 agaacaagatcaccctggt 24924

to top

>dbj|AB052736.1| Escherichia coli genes, complete cds, strain:B171
          Length = 9613

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 12   ccacaaacattattacagagatg 34
            |||||| ||||||||||||||||
Sbjct: 5632 ccacaagcattattacagagatg 5654

to top

>gb|AC118029.11| Mus musculus chromosome 9, clone RP23-465I17, complete sequence
          Length = 163283

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 106    atagtagcagcagtagtag 124
              |||||||||||||||||||
Sbjct: 109466 atagtagcagcagtagtag 109484

to top

>dbj|AP006190.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-145L6, complete
             sequence
          Length = 176082

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 106   atagtagcagcagtagtag 124
             |||||||||||||||||||
Sbjct: 92270 atagtagcagcagtagtag 92252

to top

>gb|AY864674.1| Escherichia coli strain 9717 putative type III secretion apparatus
            lipoprotein (Z4180), putative type III secretion
            apparatus protein (Z4181), Z4182 (Z4182), Z4184 (Z4184),
            putative type III secretion apparatus integral membrane
            protein component (Z4186), type III secretion apparatus
            protein (Z4188), and putative type III secretion
            apparatus integral membrane protein component (Z4189)
            genes, complete cds
          Length = 7889

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 12   ccacaaacattattacagagatg 34
            |||||| ||||||||||||||||
Sbjct: 5431 ccacaagcattattacagagatg 5453

to top

>gb|AY864673.1| Escherichia coli serotype O157 putative type III secretion apparatus
            lipoprotein (Z4180), putative type III secretion
            apparatus protein (Z4181), Z4182 (Z4182), Z4184 (Z4184),
            putative type III secretion apparatus integral membrane
            protein component (Z4186), type III secretion apparatus
            protein (Z4188), and type III secretion apparatus protein
            (Z4189) genes, complete cds
          Length = 8599

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 12   ccacaaacattattacagagatg 34
            |||||| ||||||||||||||||
Sbjct: 5430 ccacaagcattattacagagatg 5452

to top

>emb|AL929424.7| Mouse DNA sequence from clone RP23-24F19 on chromosome 2, complete
            sequence
          Length = 204020

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 107  tagtagcagcagtagtaga 125
            |||||||||||||||||||
Sbjct: 7455 tagtagcagcagtagtaga 7473

to top

>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 84     aacaagatcaccctggtcg 102
              |||||||||||||||||||
Sbjct: 948122 aacaagatcaccctggtcg 948104

to top

>dbj|AP005368.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB870F5, complete
             sequence
          Length = 111461

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 53    ctgctcacactgaccccta 71
             |||||||||||||||||||
Sbjct: 54964 ctgctcacactgaccccta 54982

to top

>gb|M25281.1|PALHISH2H3 P.lividus histone H3 and H2A genes, complete cds
          Length = 2291

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 106  atagtagcagcagtagtag 124
            |||||||||||||||||||
Sbjct: 1112 atagtagcagcagtagtag 1130

to top

>gb|DQ077151.1| Escherichia coli strain 789 EprK (eprK) gene, complete cds; EprJ
            (eprJ) pseudogene, complete sequence; truncated EprI
            (eprI), EprH (eprH), putative type III secretion system
            regulator, EivH (eivH), EpaS2 (epaS2), EpaS1 (epaS1),
            EpaR (epaR), EpaQ (epaQ), EpaP (epaP), EpaO (epaO), EivJ2
            (eivJ2), EivJ1 (eivJ1), and EivI (eivI) genes, complete
            cds; EivC (eivC) pseudogene, complete sequence; and
            truncated EivA (eivA), truncated EivF (eivF), and
            hypothetical protein genes, complete cds
          Length = 11500

 Score = 38.2 bits (19), Expect = 9.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 12   ccacaaacattattacagagatg 34
            |||||| ||||||||||||||||
Sbjct: 4908 ccacaagcattattacagagatg 4930


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,177,908
Number of Sequences: 3902068
Number of extensions: 1177908
Number of successful extensions: 89579
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89381
Number of HSP's gapped (non-prelim): 194
length of query: 188
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 166
effective length of database: 17,147,199,772
effective search space: 2846435162152
effective search space used: 2846435162152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result