Clone Name | rbasd13c17 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ006358.1|HVU6 Hordeum vulgare mRNA for ascorbate peroxidase Length = 1050 Score = 321 bits (162), Expect = 4e-85 Identities = 184/189 (97%), Gaps = 2/189 (1%) Strand = Plus / Minus Query: 1 atggcctcaagcca-caaacattattacagagatgattacttagcagtctgcactgctca 59 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 958 atggcctcaagccaacaaacattattacagagatgattacttagcagtctgcgg-gctca 900 Query: 60 cactgacccctagtctagacgcagaacaagatcaccctggtcgcgcatagtagcagcagt 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 899 cactgacccctagtctagacgcagaacaagatcaccctggtcgcgcatagtagcagcagt 840 Query: 120 agtagacacgctcttaggcttcagcgnaccccagttcggagagcctgaggtgtgcctcct 179 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 839 agtagacacgctcttaggcttcagcgtaccccagttcggagagcctgaggtgtgcctcct 780 Query: 180 tgtagtcct 188 ||||||||| Sbjct: 779 tgtagtcct 771
>gb|AF411227.1|AF411227 Hordeum vulgare ascorbate peroxidase mRNA, partial cds Length = 676 Score = 313 bits (158), Expect = 1e-82 Identities = 183/189 (96%), Gaps = 2/189 (1%) Strand = Plus / Minus Query: 1 atggcctcaagcca-caaacattattacagagatgattacttagcagtctgcactgctca 59 |||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| Sbjct: 595 atggcctcaagccaacaaacattattacagagatgattacttagcagtctgcgg-gttca 537 Query: 60 cactgacccctagtctagacgcagaacaagatcaccctggtcgcgcatagtagcagcagt 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 536 cactgacccctagtctagacgcagaacaagatcaccctggtcgcgcatagtagcagcagt 477 Query: 120 agtagacacgctcttaggcttcagcgnaccccagttcggagagcctgaggtgtgcctcct 179 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 476 agtagacacgctcttaggcttcagcgtaccccagttcggagagcctgaggtgtgcctcct 417 Query: 180 tgtagtcct 188 ||||||||| Sbjct: 416 tgtagtcct 408
>gb|AY254495.1| Oryza sativa (indica cultivar-group) ascorbate peroxidase mRNA, complete cds Length = 806 Score = 75.8 bits (38), Expect = 4e-11 Identities = 52/57 (91%) Strand = Plus / Minus Query: 130 ctcttaggcttcagcgnaccccagttcggagagcctgaggtgtgcctccttgtagtc 186 |||||| || |||||| ||||||||||||||||| ||||||| |||||||||||||| Sbjct: 769 ctcttaagcatcagcgaaccccagttcggagagcttgaggtgggcctccttgtagtc 713
>dbj|AK061841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-E04, full insert sequence Length = 1070 Score = 75.8 bits (38), Expect = 4e-11 Identities = 52/57 (91%) Strand = Plus / Minus Query: 130 ctcttaggcttcagcgnaccccagttcggagagcctgaggtgtgcctccttgtagtc 186 |||||| || |||||| ||||||||||||||||| ||||||| |||||||||||||| Sbjct: 821 ctcttaagcatcagcgaaccccagttcggagagcttgaggtgggcctccttgtagtc 765
>dbj|D45423.1| Rice mRNA for ascorbate peroxidase, complete cds Length = 983 Score = 75.8 bits (38), Expect = 4e-11 Identities = 52/57 (91%) Strand = Plus / Minus Query: 130 ctcttaggcttcagcgnaccccagttcggagagcctgaggtgtgcctccttgtagtc 186 |||||| || |||||| ||||||||||||||||| ||||||| |||||||||||||| Sbjct: 795 ctcttaagcatcagcgaaccccagttcggagagcttgaggtgggcctccttgtagtc 739
>ref|XM_470658.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 753 Score = 71.9 bits (36), Expect = 7e-10 Identities = 44/47 (93%) Strand = Plus / Minus Query: 140 tcagcgnaccccagttcggagagcctgaggtgtgcctccttgtagtc 186 |||||| ||||||||||||||||| ||||||| |||||||||||||| Sbjct: 746 tcagcgaaccccagttcggagagcttgaggtgggcctccttgtagtc 700
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 63.9 bits (32), Expect = 2e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 147 accccagttcggagagcctgaggtgtgcctccttgtagtc 186 ||||||||||||||||| ||||||| |||||||||||||| Sbjct: 9818303 accccagttcggagagcttgaggtgggcctccttgtagtc 9818264
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 63.9 bits (32), Expect = 2e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 147 accccagttcggagagcctgaggtgtgcctccttgtagtc 186 ||||||||||||||||| ||||||| |||||||||||||| Sbjct: 9816424 accccagttcggagagcttgaggtgggcctccttgtagtc 9816385
>gb|AC134232.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0013D02, complete sequence Length = 131883 Score = 63.9 bits (32), Expect = 2e-07 Identities = 38/40 (95%) Strand = Plus / Plus Query: 147 accccagttcggagagcctgaggtgtgcctccttgtagtc 186 ||||||||||||||||| ||||||| |||||||||||||| Sbjct: 56194 accccagttcggagagcttgaggtgggcctccttgtagtc 56233
>gb|BT017015.1| Zea mays clone EK07D2311G04.c mRNA sequence Length = 1097 Score = 56.0 bits (28), Expect = 4e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 147 accccagttcggagagcctgaggtgtgcctccttgtagtc 186 ||||||||||||||||| ||||||| ||||| |||||||| Sbjct: 814 accccagttcggagagcttgaggtgggcctctttgtagtc 775
>gb|BT016458.1| Zea mays clone Contig291 mRNA sequence Length = 1269 Score = 56.0 bits (28), Expect = 4e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 147 accccagttcggagagcctgaggtgtgcctccttgtagtc 186 ||||||||||||||||| ||||||| ||||| |||||||| Sbjct: 830 accccagttcggagagcttgaggtgggcctctttgtagtc 791
>emb|CR762439.7| Zebrafish DNA sequence from clone DKEY-261I20 in linkage group 13, complete sequence Length = 136285 Score = 44.1 bits (22), Expect = 0.15 Identities = 25/26 (96%) Strand = Plus / Minus Query: 13 cacaaacattattacagagatgatta 38 |||||| ||||||||||||||||||| Sbjct: 31006 cacaaagattattacagagatgatta 30981
>gb|AC079363.19| Homo sapiens 12q BAC RP11-617J18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 193741 Score = 44.1 bits (22), Expect = 0.15 Identities = 22/22 (100%) Strand = Plus / Plus Query: 106 atagtagcagcagtagtagaca 127 |||||||||||||||||||||| Sbjct: 193247 atagtagcagcagtagtagaca 193268
>ref|XM_602502.2| PREDICTED: Bos taurus similar to Zinc finger protein basonuclin 1 (LOC524182), mRNA Length = 3283 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 gtctgcactgctcacactgac 66 ||||||||||||||||||||| Sbjct: 232 gtctgcactgctcacactgac 212
>gb|AC123711.14| Mus musculus chromosome 3, clone RP23-378N16, complete sequence Length = 209168 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Plus Query: 18 acattattacagagatgatta 38 ||||||||||||||||||||| Sbjct: 82386 acattattacagagatgatta 82406
>ref|XM_545874.2| PREDICTED: Canis familiaris similar to Zinc finger protein basonuclin 1 (LOC488756), mRNA Length = 4508 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 gtctgcactgctcacactgac 66 ||||||||||||||||||||| Sbjct: 148 gtctgcactgctcacactgac 128
>emb|AL591212.11| Human DNA sequence from clone RP11-236P24 on chromosome X Contains the 5' end of a novel gene, a novel gene, a ribosomal protein L27 (RPL27) pseudogene and a CpG island, complete sequence Length = 25233 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 gcatagtagcagcagtagtag 124 ||||||||||||||||||||| Sbjct: 2503 gcatagtagcagcagtagtag 2483
>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049O12, from chromosome 2, complete sequence Length = 155154 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 gcatagtagcagcagtagtag 124 ||||||||||||||||||||| Sbjct: 78755 gcatagtagcagcagtagtag 78735
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 gcatagtagcagcagtagtag 124 ||||||||||||||||||||| Sbjct: 34426444 gcatagtagcagcagtagtag 34426464
>dbj|AP004153.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1111_C07 Length = 115190 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 gcatagtagcagcagtagtag 124 ||||||||||||||||||||| Sbjct: 42686 gcatagtagcagcagtagtag 42706
>gb|AC138320.12| Mus musculus chromosome 5, clone RP23-181I1, complete sequence Length = 230584 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 catagtagcagcagtagtagacac 128 |||||||| ||||||||||||||| Sbjct: 121918 catagtagtagcagtagtagacac 121895
>gb|AC119151.1| Homo sapiens chromosome 5 clone CTD-2582L22, complete sequence Length = 176204 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 attattacagagatgattac 39 |||||||||||||||||||| Sbjct: 104467 attattacagagatgattac 104448
>gb|AC106794.3| Homo sapiens chromosome 5 clone RP11-419C19, complete sequence Length = 200581 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 attattacagagatgattac 39 |||||||||||||||||||| Sbjct: 180088 attattacagagatgattac 180069
>gb|AC104799.4| Homo sapiens BAC clone RP11-345F13 from 2, complete sequence Length = 159933 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 cttagcagtctgcactgctc 58 |||||||||||||||||||| Sbjct: 25849 cttagcagtctgcactgctc 25830
>emb|BX813309.2| Mouse DNA sequence from clone RP23-450P5 on chromosome 2, complete sequence Length = 118443 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 17 aacattattacagagatgattacttagc 44 |||||||||||| || |||||||||||| Sbjct: 55488 aacattattacaaaggtgattacttagc 55461
>ref|XM_631010.1| Dictyostelium discoideum hypothetical protein (DDB0188565), partial mRNA Length = 1719 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 106 atagtagcagcagtagtag 124 ||||||||||||||||||| Sbjct: 1205 atagtagcagcagtagtag 1223
>ref|XM_629342.1| Dictyostelium discoideum hypothetical protein (DDB0191797), partial mRNA Length = 6618 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 tagtagcagcagtagtaga 125 ||||||||||||||||||| Sbjct: 1470 tagtagcagcagtagtaga 1488
>ref|XM_446626.1| Candida glabrata CBS138, CAGL0G06072g partial mRNA Length = 1347 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 50 gcactgctcacactgaccc 68 ||||||||||||||||||| Sbjct: 626 gcactgctcacactgaccc 608
>gb|AF548661.1| Homo sapiens general transcription factor IIH, polypeptide 3, 34kDa (GTF2H3) gene, complete cds Length = 28881 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 30 agatgattacttagcagtctgca 52 |||||||||||||||| |||||| Sbjct: 21798 agatgattacttagcattctgca 21776
>emb|AL590112.5| Human DNA sequence from clone RP11-238F10 on chromosome 1, complete sequence Length = 35120 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 gagatgattacttagcagt 47 ||||||||||||||||||| Sbjct: 15937 gagatgattacttagcagt 15955
>ref|XM_501544.1| Yarrowia lipolytica CLIB122, YALI0C07128g predicted mRNA Length = 1662 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 aacaagatcaccctggtcg 102 ||||||||||||||||||| Sbjct: 750 aacaagatcaccctggtcg 732
>emb|AL355485.9| Human DNA sequence from clone RP11-240M20 on chromosome 13, complete sequence Length = 149684 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 acaaacattattacagaga 32 ||||||||||||||||||| Sbjct: 5946 acaaacattattacagaga 5964
>ref|XM_962414.1| PREDICTED: Tribolium castaneum similar to CG4778-PA (LOC655852), mRNA Length = 867 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 106 atagtagcagcagtagtag 124 ||||||||||||||||||| Sbjct: 230 atagtagcagcagtagtag 248 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 106 atagtagcagcagtagtag 124 ||||||||||||||||||| Sbjct: 83 atagtagcagcagtagtag 101
>emb|CR380953.1| Candida glabrata strain CBS138 chromosome G complete sequence Length = 992211 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 gcactgctcacactgaccc 68 ||||||||||||||||||| Sbjct: 582411 gcactgctcacactgaccc 582429
>emb|BX927401.14| Zebrafish DNA sequence from clone CH211-210H11 in linkage group 19, complete sequence Length = 137958 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 1 atggcctcaagccacaaacatta 23 |||| |||||||||||||||||| Sbjct: 46433 atggactcaagccacaaacatta 46411
>gb|AC097359.2| Homo sapiens chromosome 3 clone RP11-259K5, complete sequence Length = 187127 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 106 atagtagcagcagtagtag 124 ||||||||||||||||||| Sbjct: 122842 atagtagcagcagtagtag 122824
>gb|AC105177.5| Homo sapiens chromosome 8, clone RP11-91D24, complete sequence Length = 149126 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 ctgctcacactgaccccta 71 ||||||||||||||||||| Sbjct: 45596 ctgctcacactgaccccta 45614
>emb|BX276188.11| Zebrafish DNA sequence from clone CH211-245A19, complete sequence Length = 177660 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 106 atagtagcagcagtagtag 124 ||||||||||||||||||| Sbjct: 86814 atagtagcagcagtagtag 86796
>gb|AC117503.8| Homo sapiens 12 BAC RP11-338K17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 218476 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 30 agatgattacttagcagtctgca 52 |||||||||||||||| |||||| Sbjct: 172427 agatgattacttagcattctgca 172449
>gb|AC114802.5| Homo sapiens BAC clone RP11-790N8 from 2, complete sequence Length = 154814 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 11 gccacaaacattattacag 29 ||||||||||||||||||| Sbjct: 143609 gccacaaacattattacag 143591
>gb|AC136290.2| Homo sapiens chromosome 3 clone CTD-2104B13, complete sequence Length = 136961 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 106 atagtagcagcagtagtag 124 ||||||||||||||||||| Sbjct: 126347 atagtagcagcagtagtag 126365
>emb|BX005239.8| Zebrafish DNA sequence from clone CH211-144F7 in linkage group 18, complete sequence Length = 168745 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 16 aaacattattacagagatg 34 ||||||||||||||||||| Sbjct: 24445 aaacattattacagagatg 24427
>emb|BX005015.5| Zebrafish DNA sequence from clone CH211-66I11 in linkage group 9, complete sequence Length = 172283 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 106 atagtagcagcagtagtag 124 ||||||||||||||||||| Sbjct: 36609 atagtagcagcagtagtag 36591
>dbj|AK099750.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092A18, full insert sequence Length = 2418 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 cactgctcacactgacccc 69 ||||||||||||||||||| Sbjct: 1303 cactgctcacactgacccc 1285
>dbj|AK109045.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-D07, full insert sequence Length = 1370 Score = 38.2 bits (19), Expect = 9.3 Identities = 25/27 (92%) Strand = Plus / Minus Query: 90 atcaccctggtcgcgcatagtagcagc 116 ||||||||||||| |||||| |||||| Sbjct: 1205 atcaccctggtcgtgcatagcagcagc 1179
>emb|CR847530.19| Zebrafish DNA sequence from clone DKEY-14I17 in linkage group 20, complete sequence Length = 144640 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 106 atagtagcagcagtagtag 124 ||||||||||||||||||| Sbjct: 134911 atagtagcagcagtagtag 134893
>emb|BX927161.7| Zebrafish DNA sequence from clone DKEY-181G6 in linkage group 19, complete sequence Length = 129477 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 tagtagcagcagtagtaga 125 ||||||||||||||||||| Sbjct: 100250 tagtagcagcagtagtaga 100268
>emb|AL132718.5|CNS01DTG Human chromosome 14 DNA sequence BAC R-626P14 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 183009 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 agaacaagatcaccctggt 100 ||||||||||||||||||| Sbjct: 24942 agaacaagatcaccctggt 24924
>dbj|AB052736.1| Escherichia coli genes, complete cds, strain:B171 Length = 9613 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 ccacaaacattattacagagatg 34 |||||| |||||||||||||||| Sbjct: 5632 ccacaagcattattacagagatg 5654
>gb|AC118029.11| Mus musculus chromosome 9, clone RP23-465I17, complete sequence Length = 163283 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 106 atagtagcagcagtagtag 124 ||||||||||||||||||| Sbjct: 109466 atagtagcagcagtagtag 109484
>dbj|AP006190.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-145L6, complete sequence Length = 176082 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 106 atagtagcagcagtagtag 124 ||||||||||||||||||| Sbjct: 92270 atagtagcagcagtagtag 92252
>gb|AY864674.1| Escherichia coli strain 9717 putative type III secretion apparatus lipoprotein (Z4180), putative type III secretion apparatus protein (Z4181), Z4182 (Z4182), Z4184 (Z4184), putative type III secretion apparatus integral membrane protein component (Z4186), type III secretion apparatus protein (Z4188), and putative type III secretion apparatus integral membrane protein component (Z4189) genes, complete cds Length = 7889 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 ccacaaacattattacagagatg 34 |||||| |||||||||||||||| Sbjct: 5431 ccacaagcattattacagagatg 5453
>gb|AY864673.1| Escherichia coli serotype O157 putative type III secretion apparatus lipoprotein (Z4180), putative type III secretion apparatus protein (Z4181), Z4182 (Z4182), Z4184 (Z4184), putative type III secretion apparatus integral membrane protein component (Z4186), type III secretion apparatus protein (Z4188), and type III secretion apparatus protein (Z4189) genes, complete cds Length = 8599 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 ccacaaacattattacagagatg 34 |||||| |||||||||||||||| Sbjct: 5430 ccacaagcattattacagagatg 5452
>emb|AL929424.7| Mouse DNA sequence from clone RP23-24F19 on chromosome 2, complete sequence Length = 204020 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 tagtagcagcagtagtaga 125 ||||||||||||||||||| Sbjct: 7455 tagtagcagcagtagtaga 7473
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 aacaagatcaccctggtcg 102 ||||||||||||||||||| Sbjct: 948122 aacaagatcaccctggtcg 948104
>dbj|AP005368.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB870F5, complete sequence Length = 111461 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 ctgctcacactgaccccta 71 ||||||||||||||||||| Sbjct: 54964 ctgctcacactgaccccta 54982
>gb|M25281.1|PALHISH2H3 P.lividus histone H3 and H2A genes, complete cds Length = 2291 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 106 atagtagcagcagtagtag 124 ||||||||||||||||||| Sbjct: 1112 atagtagcagcagtagtag 1130
>gb|DQ077151.1| Escherichia coli strain 789 EprK (eprK) gene, complete cds; EprJ (eprJ) pseudogene, complete sequence; truncated EprI (eprI), EprH (eprH), putative type III secretion system regulator, EivH (eivH), EpaS2 (epaS2), EpaS1 (epaS1), EpaR (epaR), EpaQ (epaQ), EpaP (epaP), EpaO (epaO), EivJ2 (eivJ2), EivJ1 (eivJ1), and EivI (eivI) genes, complete cds; EivC (eivC) pseudogene, complete sequence; and truncated EivA (eivA), truncated EivF (eivF), and hypothetical protein genes, complete cds Length = 11500 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 ccacaaacattattacagagatg 34 |||||| |||||||||||||||| Sbjct: 4908 ccacaagcattattacagagatg 4930 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,177,908 Number of Sequences: 3902068 Number of extensions: 1177908 Number of successful extensions: 89579 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89381 Number of HSP's gapped (non-prelim): 194 length of query: 188 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 166 effective length of database: 17,147,199,772 effective search space: 2846435162152 effective search space used: 2846435162152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)