ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHK2_HUMAN (O96017) Serine/threonine-protein kinase Chk2 (EC 2.7... 32 1.9
2AMEL_TACAC (O97647) Amelogenin (Fragment) 30 5.4

>CHK2_HUMAN (O96017) Serine/threonine-protein kinase Chk2 (EC 2.7.11.1) (Cds1)|
          Length = 543

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
 Frame = -1

Query: 569 SLSVEAVIQIFAKVDHPRHLRFTAFSSGFDHEIVLFDDKFVGSGDVNQHVVAVKAKGKLD 390
           +L+VE  I+I  K++HP  ++   F    D+ IVL   + +  G++   VV  K   +  
Sbjct: 267 ALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIVL---ELMEGGELFDKVVGNKRLKEAT 323

Query: 389 VRLQVERMVF--QWTFQDGLAGTVSSPDDSLL 300
            +L   +M+   Q+  ++G+      P++ LL
Sbjct: 324 CKLYFYQMLLAVQYLHENGIIHRDLKPENVLL 355



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>AMEL_TACAC (O97647) Amelogenin (Fragment)|
          Length = 121

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 269 ITPSQQTGHTLRASRPAN*QFQPTHLGKSTETPFSPLVSEHPIFPSP 409
           +TP+Q   H     +P    FQP    K T  P  P    HP+ P P
Sbjct: 49  VTPTQH--HQSNLPQPGQQPFQPQFPQKPTHRPIQPQAPVHPMPPMP 93


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,271,635
Number of Sequences: 219361
Number of extensions: 1993581
Number of successful extensions: 5285
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5282
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7026286028
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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