ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ459252.1|TAE459252 Triticum aestivum TAA1b gene for fatty ... 52 0.003
2ref|NM_192580.1| Oryza sativa (japonica cultivar-group), predic... 50 0.010
3ref|NM_192576.1| Oryza sativa (japonica cultivar-group), predic... 50 0.010
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.010
5dbj|AP003243.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.010
6dbj|AP003048.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.010
7dbj|AK105022.2| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.010
8dbj|AK099235.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.010
9dbj|AK063416.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.010
10gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 48 0.039
11gb|DQ352178.1| Hordeum vulgare subsp. vulgare rust resistance ge... 46 0.16
12gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic prote... 46 0.16
13dbj|AP004469.1| Lotus japonicus genomic DNA, chromosome 4, clone... 46 0.16
14gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.61
15gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 44 0.61
16gb|AC152349.11| Medicago truncatula clone mth2-52p10, complete s... 44 0.61
17gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex sub... 44 0.61
18dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.61
19dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.61
20dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.61
21dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.61
22gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 42 2.4
23gb|AC144486.2| Gasterosteus aculeatus clone CH213-169J23, comple... 42 2.4
24ref|XM_782083.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 2.4
25gb|DQ247831.1| Aegilops sharonensis voucher H6680 disrupted meio... 42 2.4
26gb|DQ247830.1| Aegilops longissima voucher H6679 disrupted meiot... 42 2.4
27gb|AC009986.10| Homo sapiens chromosome 10 clone RP11-346D6, com... 42 2.4
28gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete ... 42 2.4
29emb|AJ507214.1|HVU507214 Hordeum vulgare bbr gene for barley B r... 42 2.4
30gb|AC078833.5| Homo sapiens chromosome 7 clone RP11-266A11, comp... 42 2.4
31dbj|AP007273.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
32dbj|AP005966.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
33gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 42 2.4
34emb|AL732546.13| Mouse DNA sequence from clone RP23-264D16 on ch... 42 2.4
35gb|AC138671.16| Mus musculus chromosome 5, clone RP23-443N7, com... 40 9.6
36gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.6
37gb|AC107702.12| Mus musculus chromosome 3, clone RP23-391G19, co... 40 9.6
38gb|AC139347.4| Mus musculus BAC clone RP24-334F11 from chromosom... 40 9.6
39gb|AC146413.3| Pan troglodytes BAC clone RP43-34F2 from 7, compl... 40 9.6
40gb|AC104200.12| Mus musculus chromosome 13, clone RP24-512M2, co... 40 9.6
41gb|AC133653.4| Mus musculus BAC clone RP24-320J12 from chromosom... 40 9.6
42gb|AC129021.4| Mus musculus BAC clone RP23-312H15 from 16, compl... 40 9.6
43gb|AC116658.4| Mus musculus BAC clone RP23-293I4 from 17, comple... 40 9.6
44emb|AL356269.10| Human DNA sequence from clone RP11-420J12 on ch... 40 9.6
45emb|AL031446.7|HS482L3 Human DNA sequence from clone RP3-482L3 o... 40 9.6
46gb|AC158781.4| Mus musculus chromosome 7, clone RP23-264H19, com... 40 9.6
47ref|NM_001016999.2| Xenopus tropicalis suppression of tumorigeni... 40 9.6
48emb|CR788284.8| Zebrafish DNA sequence from clone DKEYP-13C1 in ... 40 9.6
49emb|BX284692.14| Zebrafish DNA sequence from clone CH211-282O22 ... 40 9.6
50emb|CR388098.7| Zebrafish DNA sequence from clone DKEY-12J14 in ... 40 9.6
51gb|AC063963.11| Homo sapiens chromosome 10 clone RP11-295J3, com... 40 9.6
52gb|AF253473.1| Rattus norvegicus diphosphoinositol polyphosphate... 40 9.6
53dbj|AK171273.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 9.6
54dbj|AK170860.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 9.6
55dbj|AK170215.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 9.6
56dbj|AK016080.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 9.6
57dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
58dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
59gb|AC158591.2| Pan troglodytes BAC clone CH251-526G18 from chrom... 40 9.6
60gb|AC157599.3| Mus musculus BAC clone RP23-138L13 from chromosom... 40 9.6
61ref|NM_053598.1| Rattus norvegicus nudix (nucleoside diphosphate... 40 9.6
62gb|DQ351213.1| Hordeum vulgare subsp. vulgare resistance protein... 40 9.6
63ref|XM_579565.1| PREDICTED: Rattus norvegicus nudix (nucleoside ... 40 9.6
64dbj|AP005497.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
65dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
66dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
67emb|BX072573.5| Zebrafish DNA sequence from clone DKEY-16I6, com... 40 9.6
68gb|AY325816.1| Zea mays BAC clone Z013I05, complete sequence 40 9.6
69gb|AF464738.1| Zea mays cultivar B73 putative gag protein, putat... 40 9.6
70gb|AC127305.5| Mus musculus BAC clone RP23-289H23 from 3, comple... 40 9.6
71emb|CR848109.2| Xenopus tropicalis finished cDNA, clone TGas094h06 40 9.6
72dbj|AP003476.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 9.6
73emb|AL731724.8| Mouse DNA sequence from clone RP23-1F19 on chrom... 40 9.6 
>emb|AJ459252.1|TAE459252 Triticum aestivum TAA1b gene for fatty acyl coA reductase
          Length = 4308

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 22   aatctttaaaaagtcttatttaggaacggagagagtag 59
            ||||||||||||| | ||||||||||||||| ||||||
Sbjct: 1008 aatctttaaaaagacatatttaggaacggagggagtag 971
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>ref|NM_192580.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1461

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                    
Query: 455 tgtcatcaaacagcacaatctcatgatcaaagccactgctgaaagcagtaaatctca 511
           |||||||  ||| ||| ||||||||||||||||| |||||||| || || |||||||
Sbjct: 994 tgtcatcgtacaacacgatctcatgatcaaagccgctgctgaaggcggtgaatctca 938
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>ref|NM_192576.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1230

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                        
Query: 463  aacagcacaatctcatgatcaaagccactgctgaaagcagtaaatctcaaatgacgagga 522
            ||||||| ||||||| | ||||||||||| |  || ||||| ||||||| ||||||||||
Sbjct: 1091 aacagcaaaatctcacggtcaaagccactacaaaatgcagtgaatctcacatgacgagga 1032

             
Query: 523  t 523
            |
Sbjct: 1031 t 1031
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 455      tgtcatcaaacagcacaatctcatgatcaaagccactgctgaaagcagtaaatctca 511
                |||||||  ||| ||| ||||||||||||||||| |||||||| || || |||||||
Sbjct: 23080012 tgtcatcgtacaacacgatctcatgatcaaagccgctgctgaaggcggtgaatctca 23080068



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                            
Query: 463      aacagcacaatctcatgatcaaagccactgctgaaagcagtaaatctcaaatgacgagga 522
                ||||||| ||||||| | ||||||||||| |  || ||||| ||||||| ||||||||||
Sbjct: 23019789 aacagcaaaatctcacggtcaaagccactacaaaatgcagtgaatctcacatgacgagga 23019848

                 
Query: 523      t 523
                |
Sbjct: 23019849 t 23019849
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>dbj|AP003243.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0415C01
          Length = 138701

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                         
Query: 463   aacagcacaatctcatgatcaaagccactgctgaaagcagtaaatctcaaatgacgagga 522
             ||||||| ||||||| | ||||||||||| |  || ||||| ||||||| ||||||||||
Sbjct: 90195 aacagcaaaatctcacggtcaaagccactacaaaatgcagtgaatctcacatgacgagga 90254

              
Query: 523   t 523
             |
Sbjct: 90255 t 90255
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>dbj|AP003048.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0710A02
          Length = 157201

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                      
Query: 455   tgtcatcaaacagcacaatctcatgatcaaagccactgctgaaagcagtaaatctca 511
             |||||||  ||| ||| ||||||||||||||||| |||||||| || || |||||||
Sbjct: 12171 tgtcatcgtacaacacgatctcatgatcaaagccgctgctgaaggcggtgaatctca 12227
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>dbj|AK105022.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-G09, full
            insert sequence
          Length = 1644

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                        
Query: 463  aacagcacaatctcatgatcaaagccactgctgaaagcagtaaatctcaaatgacgagga 522
            ||||||| ||||||| | ||||||||||| |  || ||||| ||||||| ||||||||||
Sbjct: 1148 aacagcaaaatctcacggtcaaagccactacaaaatgcagtgaatctcacatgacgagga 1089

             
Query: 523  t 523
            |
Sbjct: 1088 t 1088
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>dbj|AK099235.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105L12, full
            insert sequence
          Length = 1637

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                        
Query: 463  aacagcacaatctcatgatcaaagccactgctgaaagcagtaaatctcaaatgacgagga 522
            ||||||| ||||||| | ||||||||||| |  || ||||| ||||||| ||||||||||
Sbjct: 1141 aacagcaaaatctcacggtcaaagccactacaaaatgcagtgaatctcacatgacgagga 1082

             
Query: 523  t 523
            |
Sbjct: 1081 t 1081
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>dbj|AK063416.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-B09, full
            insert sequence
          Length = 1661

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                        
Query: 463  aacagcacaatctcatgatcaaagccactgctgaaagcagtaaatctcaaatgacgagga 522
            ||||||| ||||||| | ||||||||||| |  || ||||| ||||||| ||||||||||
Sbjct: 1153 aacagcaaaatctcacggtcaaagccactacaaaatgcagtgaatctcacatgacgagga 1094

             
Query: 523  t 523
            |
Sbjct: 1093 t 1093
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>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 42/47 (89%), Gaps = 2/47 (4%)
 Strand = Plus / Plus

                                                           
Query: 16   tagtacaatctttaaaaagtcttat--ttaggaacggagagagtaga 60
            ||||||||||| ||||| |||||||  |||||||||||| |||||||
Sbjct: 1710 tagtacaatctctaaaaggtcttatatttaggaacggagggagtaga 1756



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 35/39 (89%), Gaps = 2/39 (5%)
 Strand = Plus / Minus

                                                     
Query: 23     atctttaaaaagtcttat--ttaggaacggagagagtag 59
              |||||||||||| |||||  |||||||||||| ||||||
Sbjct: 136721 atctttaaaaagacttatatttaggaacggagggagtag 136683
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>gb|DQ352178.1| Hordeum vulgare subsp. vulgare rust resistance gene ABC1041 (ABC1041)
            gene, complete cds
          Length = 8735

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 41/46 (89%), Gaps = 2/46 (4%)
 Strand = Plus / Plus

                                                          
Query: 16   tagtacaatctttaaaaagtcttat--ttaggaacggagagagtag 59
            ||||||||||| ||||| |||||||  |||||||||||| ||||||
Sbjct: 5758 tagtacaatctctaaaaggtcttatatttaggaacggagggagtag 5803
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>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast
             intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes,
             complete cds
          Length = 65979

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 38/42 (90%), Gaps = 2/42 (4%)
 Strand = Plus / Plus

                                                       
Query: 22    aatctttaaaaagtcttat--ttaggaacggagagagtagaa 61
             ||||||||||| |||||||  |||||||||||| ||||||||
Sbjct: 61132 aatctttaaaaggtcttatatttaggaacggagggagtagaa 61173
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>dbj|AP004469.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT15D01, TM0004a,
             complete sequence
          Length = 92631

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 37    ttatttaggaacggagagagtag 59
             |||||||||||||||||||||||
Sbjct: 12999 ttatttaggaacggagagagtag 12977
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>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0087J09, complete sequence
          Length = 153351

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 492   gctgaaagcagtaaatctcaaa 513
             ||||||||||||||||||||||
Sbjct: 13012 gctgaaagcagtaaatctcaaa 13033



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 492  gctgaaagcagtaaatctcaaa 513
            ||||||||||||||||||||||
Sbjct: 1553 gctgaaagcagtaaatctcaaa 1574
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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 40/45 (88%), Gaps = 2/45 (4%)
 Strand = Plus / Minus

                                                          
Query: 16    tagtacaatctttaaaaagtct--tatttaggaacggagagagta 58
             ||||||||||||||||| ||||  ||||||| ||||||| |||||
Sbjct: 23095 tagtacaatctttaaaaggtcttatatttagaaacggagggagta 23051
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>gb|AC152349.11| Medicago truncatula clone mth2-52p10, complete sequence
          Length = 105433

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 37    ttatttaggaacggagagagta 58
             ||||||||||||||||||||||
Sbjct: 34529 ttatttaggaacggagagagta 34550
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>gb|AY972619.1| Hordeum vulgare subsp. vulgare cultivar Morex subclone NRG098
           cyclic nucleotide-gated ion channel 4 (Nec1) gene,
           complete cds
          Length = 9090

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 40/45 (88%), Gaps = 2/45 (4%)
 Strand = Plus / Plus

                                                        
Query: 16  tagtacaatctttaaaaagtcttat--ttaggaacggagagagta 58
           |||| |||||| |||||||||||||  |||||||||||| |||||
Sbjct: 302 tagtgcaatctctaaaaagtcttatatttaggaacggagggagta 346
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 492      gctgaaagcagtaaatctcaaa 513
                ||||||||||||||||||||||
Sbjct: 18473547 gctgaaagcagtaaatctcaaa 18473568



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 492      gctgaaagcagtaaatctcaaa 513
                ||||||||||||||||||||||
Sbjct: 18462088 gctgaaagcagtaaatctcaaa 18462109
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 37      ttatttaggaacggagagagta 58
               ||||||||||||||||||||||
Sbjct: 3170797 ttatttaggaacggagagagta 3170776



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 38       tatttaggaacggagagagta 58
                |||||||||||||||||||||
Sbjct: 22617595 tatttaggaacggagagagta 22617615



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 454      ttgtcatcaaacagcacaat 473
                ||||||||||||||||||||
Sbjct: 27772070 ttgtcatcaaacagcacaat 27772051
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>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0463D04
          Length = 145828

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 492    gctgaaagcagtaaatctcaaa 513
              ||||||||||||||||||||||
Sbjct: 135421 gctgaaagcagtaaatctcaaa 135442



 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 492    gctgaaagcagtaaatctcaaa 513
              ||||||||||||||||||||||
Sbjct: 123962 gctgaaagcagtaaatctcaaa 123983
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>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              clone:P0681F10
          Length = 170371

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 37     ttatttaggaacggagagagta 58
              ||||||||||||||||||||||
Sbjct: 124982 ttatttaggaacggagagagta 124961
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 636     aaaacgtgactggaaataaag 656
               |||||||||||||||||||||
Sbjct: 2787301 aaaacgtgactggaaataaag 2787321
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>gb|AC144486.2| Gasterosteus aculeatus clone CH213-169J23, complete sequence
          Length = 157502

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 649   aaataaagctcaacatatgca 669
             |||||||||||||||||||||
Sbjct: 81485 aaataaagctcaacatatgca 81505
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>ref|XM_782083.1| PREDICTED: Strongylocentrotus purpuratus similar to keratinocyte
           associated protein 2 (LOC582112), mRNA
          Length = 961

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 195 ttattcacttcttttcatgaa 215
           |||||||||||||||||||||
Sbjct: 753 ttattcacttcttttcatgaa 773
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>gb|DQ247831.1| Aegilops sharonensis voucher H6680 disrupted meiotic cDNA 1 (DMC1)
           gene, partial cds; and Stowaway miniature
           inverted-repeat transposable element, complete sequence
          Length = 1170

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 37  ttatttaggaacggagagagtagaa 61
           |||||||||||||||| ||||||||
Sbjct: 939 ttatttaggaacggagggagtagaa 915
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>gb|DQ247830.1| Aegilops longissima voucher H6679 disrupted meiotic cDNA 1 (DMC1)
           gene, partial cds; and Stowaway miniature
           inverted-repeat transposable element, complete sequence
          Length = 1170

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 37  ttatttaggaacggagagagtagaa 61
           |||||||||||||||| ||||||||
Sbjct: 939 ttatttaggaacggagggagtagaa 915
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>gb|AC009986.10| Homo sapiens chromosome 10 clone RP11-346D6, complete sequence
          Length = 181733

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 201    acttcttttcatgaagtttca 221
              |||||||||||||||||||||
Sbjct: 134764 acttcttttcatgaagtttca 134744
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>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence
          Length = 102433

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 38    tatttaggaacggagagagta 58
             |||||||||||||||||||||
Sbjct: 83485 tatttaggaacggagagagta 83465



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 38    tatttaggaacggagagagtagaatacaa 66
             ||||||||||||||| ||||| |||||||
Sbjct: 14510 tatttaggaacggagggagtataatacaa 14482



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 38    tatttaggaacggagagagtagaa 61
             ||||||||||||||| ||||||||
Sbjct: 66626 tatttaggaacggagggagtagaa 66603
to top
>emb|AJ507214.1|HVU507214 Hordeum vulgare bbr gene for barley B recombinant
          Length = 4946

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 38   tatttaggaacggagagagta 58
            |||||||||||||||||||||
Sbjct: 1358 tatttaggaacggagagagta 1378
to top
>gb|AC078833.5| Homo sapiens chromosome 7 clone RP11-266A11, complete sequence
          Length = 143947

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 23     atctttaaaaagtcttattta 43
              |||||||||||||||||||||
Sbjct: 122094 atctttaaaaagtcttattta 122074
to top
>dbj|AP007273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBb0035K09
          Length = 124866

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 38     tatttaggaacggagagagta 58
              |||||||||||||||||||||
Sbjct: 101547 tatttaggaacggagagagta 101567
to top
>dbj|AP005966.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1047H05
          Length = 187273

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 38    tatttaggaacggagagagta 58
             |||||||||||||||||||||
Sbjct: 83004 tatttaggaacggagagagta 83024
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 3       ttaaaataagtcctagtacaa 23
               |||||||||||||||||||||
Sbjct: 2188280 ttaaaataagtcctagtacaa 2188300
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>emb|AL732546.13| Mouse DNA sequence from clone RP23-264D16 on chromosome 2, complete
             sequence
          Length = 233321

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 71    ctacacaaatccacatgtgaatgaa 95
             |||||||||| ||||||||||||||
Sbjct: 68127 ctacacaaatgcacatgtgaatgaa 68151
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>gb|AC138671.16| Mus musculus chromosome 5, clone RP23-443N7, complete sequence
          Length = 196443

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    taaaaagtcttatttaggaa 47
             ||||||||||||||||||||
Sbjct: 35090 taaaaagtcttatttaggaa 35109
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>gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017O06, complete sequence
          Length = 151656

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 38    tatttaggaacggagagagtagaa 61
             ||||||| ||||||||||||||||
Sbjct: 86577 tatttagaaacggagagagtagaa 86554
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>gb|AC107702.12| Mus musculus chromosome 3, clone RP23-391G19, complete sequence
          Length = 219296

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    tacaatctttaaaaagtctt 38
             ||||||||||||||||||||
Sbjct: 90670 tacaatctttaaaaagtctt 90689
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>gb|AC139347.4| Mus musculus BAC clone RP24-334F11 from chromosome 16, complete
            sequence
          Length = 193398

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 264  agcaaataacaccctcacaacaaa 287
            |||||| |||||||||||||||||
Sbjct: 7607 agcaaacaacaccctcacaacaaa 7630
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>gb|AC146413.3| Pan troglodytes BAC clone RP43-34F2 from 7, complete sequence
          Length = 160890

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     atctttaaaaagtcttattt 42
              ||||||||||||||||||||
Sbjct: 143127 atctttaaaaagtcttattt 143108
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>gb|AC104200.12| Mus musculus chromosome 13, clone RP24-512M2, complete sequence
          Length = 171912

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 523   tggtcaacctttgcaaagat 542
             ||||||||||||||||||||
Sbjct: 51502 tggtcaacctttgcaaagat 51521
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>gb|AC133653.4| Mus musculus BAC clone RP24-320J12 from chromosome 7, complete sequence
          Length = 144233

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 480   atcaaagccactgctgaaag 499
             ||||||||||||||||||||
Sbjct: 32318 atcaaagccactgctgaaag 32299
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>gb|AC129021.4| Mus musculus BAC clone RP23-312H15 from 16, complete sequence
          Length = 184961

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 264    agcaaataacaccctcacaacaaa 287
              |||||| |||||||||||||||||
Sbjct: 166533 agcaaacaacaccctcacaacaaa 166556
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>gb|AC116658.4| Mus musculus BAC clone RP23-293I4 from 17, complete sequence
          Length = 199182

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   acaaggaaatgaaccttgac 170
             ||||||||||||||||||||
Sbjct: 92951 acaaggaaatgaaccttgac 92932
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>emb|AL356269.10| Human DNA sequence from clone RP11-420J12 on chromosome 13, complete
              sequence
          Length = 141895

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     ctagtacaatctttaaaaag 34
              ||||||||||||||||||||
Sbjct: 125307 ctagtacaatctttaaaaag 125288
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>emb|AL031446.7|HS482L3 Human DNA sequence from clone RP3-482L3 on chromosome 6q15-16.3,
             complete sequence
          Length = 112080

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    agtacaatctttaaaaagtc 36
             ||||||||||||||||||||
Sbjct: 39280 agtacaatctttaaaaagtc 39261
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>gb|AC158781.4| Mus musculus chromosome 7, clone RP23-264H19, complete sequence
          Length = 208419

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 480   atcaaagccactgctgaaag 499
             ||||||||||||||||||||
Sbjct: 75108 atcaaagccactgctgaaag 75089
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>ref|NM_001016999.2| Xenopus tropicalis suppression of tumorigenicity 7 (st7), mRNA
          Length = 1871

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  cttcttttcatgaagtttca 221
            ||||||||||||||||||||
Sbjct: 1434 cttcttttcatgaagtttca 1453
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>emb|CR788284.8| Zebrafish DNA sequence from clone DKEYP-13C1 in linkage group 13,
             complete sequence
          Length = 91593

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   gtcatcaaacagcacaatct 475
             ||||||||||||||||||||
Sbjct: 33039 gtcatcaaacagcacaatct 33058
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>emb|BX284692.14| Zebrafish DNA sequence from clone CH211-282O22 in linkage group 17,
             complete sequence
          Length = 162970

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   acaccattctctccacttgt 381
             ||||||||||||||||||||
Sbjct: 40923 acaccattctctccacttgt 40904
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>emb|CR388098.7| Zebrafish DNA sequence from clone DKEY-12J14 in linkage group 13,
             complete sequence
          Length = 192818

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   gtcatcaaacagcacaatct 475
             ||||||||||||||||||||
Sbjct: 29861 gtcatcaaacagcacaatct 29880
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>gb|AC063963.11| Homo sapiens chromosome 10 clone RP11-295J3, complete sequence
          Length = 179104

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 459   atcaaacagcacaatctcatgatcaaagccac 490
             ||||||||||||||| ||| ||||||| ||||
Sbjct: 56800 atcaaacagcacaatgtcaggatcaaatccac 56769
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>gb|AF253473.1| Rattus norvegicus diphosphoinositol polyphosphate phosphohydolase
            type II (Nudt4) mRNA, complete cds
          Length = 2954

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 366  cattctctccacttgtaagc 385
            ||||||||||||||||||||
Sbjct: 1116 cattctctccacttgtaagc 1135
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>dbj|AK171273.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630323B11
            product:coagulation factor XIII, alpha subunit, full
            insert sequence
          Length = 2966

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 523  tggtcaacctttgcaaagat 542
            ||||||||||||||||||||
Sbjct: 2547 tggtcaacctttgcaaagat 2566
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>dbj|AK170860.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630205P08
            product:coagulation factor XIII, alpha subunit, full
            insert sequence
          Length = 2965

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 523  tggtcaacctttgcaaagat 542
            ||||||||||||||||||||
Sbjct: 2546 tggtcaacctttgcaaagat 2565
to top
>dbj|AK170215.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630031D02
            product:coagulation factor XIII, alpha subunit, full
            insert sequence
          Length = 2969

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 523  tggtcaacctttgcaaagat 542
            ||||||||||||||||||||
Sbjct: 2550 tggtcaacctttgcaaagat 2569
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>dbj|AK016080.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930549K11 product:hypothetical protein,
           full insert sequence
          Length = 1409

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 480 atcaaagccactgctgaaag 499
           ||||||||||||||||||||
Sbjct: 978 atcaaagccactgctgaaag 997
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 38      tatttaggaacggagagagtagaa 61
               ||||||| ||||||||||||||||
Sbjct: 6139008 tatttagaaacggagagagtagaa 6138985
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 38       tatttaggaacggagagagtagaa 61
                |||||||| |||||||||||||||
Sbjct: 18695119 tatttagggacggagagagtagaa 18695096
to top
>gb|AC158591.2| Pan troglodytes BAC clone CH251-526G18 from chromosome unknown, complete
              sequence
          Length = 179276

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 568    gaaaggaacatgaagtctat 587
              ||||||||||||||||||||
Sbjct: 104414 gaaaggaacatgaagtctat 104395
to top
>gb|AC157599.3| Mus musculus BAC clone RP23-138L13 from chromosome 17, complete sequence
          Length = 185556

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    acaaggaaatgaaccttgac 170
              ||||||||||||||||||||
Sbjct: 184326 acaaggaaatgaaccttgac 184307
to top
>ref|NM_053598.1| Rattus norvegicus nudix (nucleoside diphosphate linked moiety X)-type
            motif 4 (Nudt4), mRNA
          Length = 2954

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 366  cattctctccacttgtaagc 385
            ||||||||||||||||||||
Sbjct: 1116 cattctctccacttgtaagc 1135
to top
>gb|DQ351213.1| Hordeum vulgare subsp. vulgare resistance protein (ABC1037) gene,
            complete cds
          Length = 25080

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 41/47 (87%), Gaps = 2/47 (4%)
 Strand = Plus / Minus

                                                           
Query: 16   tagtacaatctttaaaaagtcttat--ttaggaacggagagagtaga 60
            ||||| ||||| ||||| |||||||  |||||||||||| |||||||
Sbjct: 5410 tagtataatctctaaaaggtcttatatttaggaacggagggagtaga 5364
to top
>ref|XM_579565.1| PREDICTED: Rattus norvegicus nudix (nucleoside diphosphate linked
            moiety X)-type motif 4 (Nudt4), mRNA
          Length = 2926

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 366  cattctctccacttgtaagc 385
            ||||||||||||||||||||
Sbjct: 1119 cattctctccacttgtaagc 1138
to top
>dbj|AP005497.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0071O21
          Length = 158410

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 38    tatttaggaacggagagagtagaa 61
             |||||||| |||||||||||||||
Sbjct: 37761 tatttagggacggagagagtagaa 37738
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>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1153E06
          Length = 174588

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 454    ttgtcatcaaacagcacaat 473
              ||||||||||||||||||||
Sbjct: 121325 ttgtcatcaaacagcacaat 121306
to top
>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0710B08
          Length = 186991

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   ttgtcatcaaacagcacaat 473
             ||||||||||||||||||||
Sbjct: 74579 ttgtcatcaaacagcacaat 74560
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>emb|BX072573.5| Zebrafish DNA sequence from clone DKEY-16I6, complete sequence
          Length = 207797

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 456    gtcatcaaacagcacaatct 475
              ||||||||||||||||||||
Sbjct: 187826 gtcatcaaacagcacaatct 187807
to top
>gb|AY325816.1| Zea mays BAC clone Z013I05, complete sequence
          Length = 152337

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 567    tgaaaggaacatgaagtcta 586
              ||||||||||||||||||||
Sbjct: 146146 tgaaaggaacatgaagtcta 146165
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>gb|AF464738.1| Zea mays cultivar B73 putative gag protein, putative gag-pol precursor,
             putative transposase, putative copia-type pol polyprotein,
             putative copia-like retrotransposon Hopscotch polyprotein,
             putative gag protein, putative prpol, putative prpol,
             putative pol protein, putative pol protein, putative gag
             protein, and teosinte branched1 protein genes, complete
             cds
          Length = 130843

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 567   tgaaaggaacatgaagtcta 586
             ||||||||||||||||||||
Sbjct: 58027 tgaaaggaacatgaagtcta 58046
to top
>gb|AC127305.5| Mus musculus BAC clone RP23-289H23 from 3, complete sequence
          Length = 211760

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    tacaatctttaaaaagtctt 38
             ||||||||||||||||||||
Sbjct: 40467 tacaatctttaaaaagtctt 40486
to top
>emb|CR848109.2| Xenopus tropicalis finished cDNA, clone TGas094h06
          Length = 1871

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  cttcttttcatgaagtttca 221
            ||||||||||||||||||||
Sbjct: 1434 cttcttttcatgaagtttca 1453
to top
>dbj|AP003476.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB2033H1
          Length = 179650

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 568    gaaaggaacatgaagtctat 587
              ||||||||||||||||||||
Sbjct: 144145 gaaaggaacatgaagtctat 144164
to top
>emb|AL731724.8| Mouse DNA sequence from clone RP23-1F19 on chromosome 2, complete
              sequence
          Length = 205917

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      ctttaaaataagtcctagta 20
              ||||||||||||||||||||
Sbjct: 153346 ctttaaaataagtcctagta 153327


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,121,421
Number of Sequences: 3902068
Number of extensions: 6121421
Number of successful extensions: 122896
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 122382
Number of HSP's gapped (non-prelim): 513
length of query: 701
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 678
effective length of database: 17,143,297,704
effective search space: 11623155843312
effective search space used: 11623155843312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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