ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VPS29_MOUSE (Q9QZ88) Vacuolar protein sorting 29 (Vesicle protei... 78 8e-15
2VPS29_HUMAN (Q9UBQ0) Vacuolar protein sorting 29 (Vesicle protei... 78 8e-15
3GUAA_HELHP (Q7VG78) Probable GMP synthase [glutamine-hydrolyzing... 28 5.3
4GUAA_CHLTE (Q8KFZ5) GMP synthase [glutamine-hydrolyzing] (EC 6.3... 28 9.1

>VPS29_MOUSE (Q9QZ88) Vacuolar protein sorting 29 (Vesicle protein sorting 29)|
          Length = 182

 Score = 77.8 bits (190), Expect = 8e-15
 Identities = 31/47 (65%), Positives = 40/47 (85%)
 Frame = -3

Query: 143 LHITRGEYDEDARYPETKTVTIGQFKLGLCHGHQVVPWGDLDSLAML 3
           +HI RG++DE+  YPE K VT+GQFK+GL HGHQV+PWGD+ SLA+L
Sbjct: 56  VHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 102



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>VPS29_HUMAN (Q9UBQ0) Vacuolar protein sorting 29 (Vesicle protein sorting 29)|
           (hVPS29) (PEP11)
          Length = 182

 Score = 77.8 bits (190), Expect = 8e-15
 Identities = 31/47 (65%), Positives = 40/47 (85%)
 Frame = -3

Query: 143 LHITRGEYDEDARYPETKTVTIGQFKLGLCHGHQVVPWGDLDSLAML 3
           +HI RG++DE+  YPE K VT+GQFK+GL HGHQV+PWGD+ SLA+L
Sbjct: 56  VHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 102



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>GUAA_HELHP (Q7VG78) Probable GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 1375

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 122 YDEDARYPETKTVTIGQFKLGLCHGHQVV 36
           Y++DA  P++   T+G   LG+C+G Q++
Sbjct: 62  YEKDAYKPDSAIFTLGIPILGICYGMQLI 90



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>GUAA_CHLTE (Q8KFZ5) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 516

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 122 YDEDARYPETKTVTIGQFKLGLCHGHQVV 36
           YDE A  P+ +  ++G   LG+C+G Q +
Sbjct: 62  YDEKAFMPDPEVFSLGVPVLGICYGLQAI 90


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,886,452
Number of Sequences: 219361
Number of extensions: 305912
Number of successful extensions: 876
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 80,573,946
effective HSP length: 23
effective length of database: 75,528,643
effective search space used: 1812687432
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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