ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd13c03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009541.1| Triticum aestivum clone wr1.pk0152.a12:fis, full insert mRNA sequence Length = 933 Score = 258 bits (130), Expect = 4e-66 Identities = 139/142 (97%) Strand = Plus / Minus Query: 4 agcatcgctagggagtccaggtcgccccatggaacaacctgatggccatggcatagccct 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 agcatcgctagggagtccaggtcgccccatggaacaacctgatggccatggcatagccct 207 Query: 64 agcttgaactggccaatagtaactgttttagtctctgggtaacgagcatcctcatcatat 123 ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 206 agcttgaactgaccaatagtaactgtcttagtctctgggtagcgagcatcctcatcatat 147 Query: 124 tcacctctggtaatgtggagat 145 |||||||||||||||||||||| Sbjct: 146 tcacctctggtaatgtggagat 125
>dbj|AK071757.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113N03, full insert sequence Length = 944 Score = 202 bits (102), Expect = 2e-49 Identities = 132/142 (92%) Strand = Plus / Minus Query: 4 agcatcgctagggagtccaggtcgccccatggaacaacctgatggccatggcatagccct 63 |||||||| |||||||||| ||||||||||||||||||||||| |||||||| |||||| Sbjct: 483 agcatcgccagggagtccaaatcgccccatggaacaacctgatgaccatggcacagccct 424 Query: 64 agcttgaactggccaatagtaactgttttagtctctgggtaacgagcatcctcatcatat 123 ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 423 agcttgaactgaccaatagtaagtgtcttagtctctgggtaacgagcatcctcatcatat 364 Query: 124 tcacctctggtaatgtggagat 145 ||||||||||| || ||||||| Sbjct: 363 tcacctctggttatatggagat 342
>dbj|AK060027.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-D07, full insert sequence Length = 1047 Score = 202 bits (102), Expect = 2e-49 Identities = 132/142 (92%) Strand = Plus / Minus Query: 4 agcatcgctagggagtccaggtcgccccatggaacaacctgatggccatggcatagccct 63 |||||||| |||||||||| ||||||||||||||||||||||| |||||||| |||||| Sbjct: 586 agcatcgccagggagtccaaatcgccccatggaacaacctgatgaccatggcacagccct 527 Query: 64 agcttgaactggccaatagtaactgttttagtctctgggtaacgagcatcctcatcatat 123 ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 526 agcttgaactgaccaatagtaagtgtcttagtctctgggtaacgagcatcctcatcatat 467 Query: 124 tcacctctggtaatgtggagat 145 ||||||||||| || ||||||| Sbjct: 466 tcacctctggttatatggagat 445
>gb|AY104320.1| Zea mays PCO068338 mRNA sequence Length = 1026 Score = 194 bits (98), Expect = 5e-47 Identities = 131/142 (92%) Strand = Plus / Minus Query: 4 agcatcgctagggagtccaggtcgccccatggaacaacctgatggccatggcatagccct 63 |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 564 agcatcgccagggagtccaggtcgccccatggaacaacctgatggccatggcacagccca 505 Query: 64 agcttgaactggccaatagtaactgttttagtctctgggtaacgagcatcctcatcatat 123 ||||| ||||| ||||| |||| ||| |||||||||||||| |||||||||||||||| | Sbjct: 504 agcttaaactgaccaattgtaagtgtcttagtctctgggtatcgagcatcctcatcatgt 445 Query: 124 tcacctctggtaatgtggagat 145 |||||||||||||| ||||||| Sbjct: 444 tcacctctggtaatatggagat 423
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 157 bits (79), Expect = 1e-35 Identities = 100/107 (93%) Strand = Plus / Plus Query: 39 aacctgatggccatggcatagccctagcttgaactggccaatagtaactgttttagtctc 98 ||||||||| |||||||| ||||||||||||||||| |||||||||| ||| |||||||| Sbjct: 9459812 aacctgatgaccatggcacagccctagcttgaactgaccaatagtaagtgtcttagtctc 9459871 Query: 99 tgggtaacgagcatcctcatcatattcacctctggtaatgtggagat 145 |||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 9459872 tgggtaacgagcatcctcatcatattcacctctggttatatggagat 9459918 Score = 63.9 bits (32), Expect = 1e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 4 agcatcgctagggagtccaggtcgccccatggaacaacctgatg 47 |||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 9458006 agcatcgccagggagtccaaatcgccccatggaacaacctgatg 9458049
>dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0006C08 Length = 151987 Score = 157 bits (79), Expect = 1e-35 Identities = 100/107 (93%) Strand = Plus / Plus Query: 39 aacctgatggccatggcatagccctagcttgaactggccaatagtaactgttttagtctc 98 ||||||||| |||||||| ||||||||||||||||| |||||||||| ||| |||||||| Sbjct: 73373 aacctgatgaccatggcacagccctagcttgaactgaccaatagtaagtgtcttagtctc 73432 Query: 99 tgggtaacgagcatcctcatcatattcacctctggtaatgtggagat 145 |||||||||||||||||||||||||||||||||||| || ||||||| Sbjct: 73433 tgggtaacgagcatcctcatcatattcacctctggttatatggagat 73479 Score = 63.9 bits (32), Expect = 1e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 4 agcatcgctagggagtccaggtcgccccatggaacaacctgatg 47 |||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 71567 agcatcgccagggagtccaaatcgccccatggaacaacctgatg 71610
>gb|BT013890.1| Lycopersicon esculentum clone 132875R, mRNA sequence Length = 951 Score = 65.9 bits (33), Expect = 3e-08 Identities = 111/137 (81%) Strand = Plus / Minus Query: 1 tgaagcatcgctagggagtccaggtcgccccatggaacaacctgatggccatggcatagc 60 |||||||| |||| ||||||| ||| ||||||||||||||||| ||||||||||| | Sbjct: 480 tgaagcatggctaatgagtccaagtcaccccatggaacaacctggtggccatggcacaat 421 Query: 61 cctagcttgaactggccaatagtaactgttttagtctctgggtaacgagcatcctcatca 120 || ||||| || || ||||| || | || |||||||| |||||||| | ||||| ||| Sbjct: 420 ccaagcttaaattgaccaatcgttagagtcttagtctcagggtaacgtgtctcctcgtca 361 Query: 121 tattcacctctggtaat 137 || || ||||| ||||| Sbjct: 360 tactcgcctctagtaat 344
>gb|AC137995.31| Medicago truncatula clone mth2-11j1, complete sequence Length = 146749 Score = 48.1 bits (24), Expect = 0.007 Identities = 36/40 (90%) Strand = Plus / Minus Query: 4 agcatcgctagggagtccaggtcgccccatggaacaacct 43 |||||||| || ||||||||||| |||||||||| ||||| Sbjct: 55736 agcatcgccagcgagtccaggtctccccatggaataacct 55697
>gb|AC144714.4| Mus musculus BAC clone RP24-371M20 from chromosome 8, complete sequence Length = 176994 Score = 42.1 bits (21), Expect = 0.44 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 atcatattcacctctggtaat 137 ||||||||||||||||||||| Sbjct: 99749 atcatattcacctctggtaat 99729
>dbj|AP006430.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT33L13, TM0327, complete sequence Length = 105384 Score = 42.1 bits (21), Expect = 0.44 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 agcatcctcatcatattcacc 128 ||||||||||||||||||||| Sbjct: 26738 agcatcctcatcatattcacc 26718
>ref|XM_870004.1| PREDICTED: Bos taurus similar to Complement C4 precursor (LOC617696), partial mRNA Length = 4757 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 aacaacctgatggccatggc 55 |||||||||||||||||||| Sbjct: 2943 aacaacctgatggccatggc 2962
>gb|AC127236.3| Mus musculus BAC clone RP24-351L1 from chromosome 18, complete sequence Length = 188946 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 127 cctctggtaatgtggagat 145 ||||||||||||||||||| Sbjct: 26608 cctctggtaatgtggagat 26626
>gb|AC123832.4| Mus musculus BAC clone RP24-126O19 from chromosome 9, complete sequence Length = 181337 Score = 38.2 bits (19), Expect = 6.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 74 ggccaatagtaactgttttagtctctg 100 |||||||||||| |||||||| ||||| Sbjct: 56911 ggccaatagtaaatgttttaggctctg 56885
>gb|AC108434.12| Mus musculus chromosome 18, clone RP23-198I24, complete sequence Length = 197080 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 127 cctctggtaatgtggagat 145 ||||||||||||||||||| Sbjct: 180841 cctctggtaatgtggagat 180859
>emb|AL139009.14| Human DNA sequence from clone RP5-976H8 on chromosome 10p14-15.3, complete sequence Length = 172657 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 tcacctctggtaatgtgga 142 ||||||||||||||||||| Sbjct: 32782 tcacctctggtaatgtgga 32764
>gb|AC096539.2| Homo sapiens chromosome 1 clone RP11-150L22, complete sequence Length = 183307 Score = 38.2 bits (19), Expect = 6.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 67 ttgaactggccaatagtaactgt 89 |||||||| |||||||||||||| Sbjct: 158000 ttgaactgtccaatagtaactgt 158022
>emb|CR618020.1| full-length cDNA clone CS0DA011YO14 of Neuroblastoma of Homo sapiens (human) Length = 1709 Score = 38.2 bits (19), Expect = 6.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 67 ttgaactggccaatagtaactgt 89 |||||||| |||||||||||||| Sbjct: 1306 ttgaactgtccaatagtaactgt 1328
>gb|AC087463.5| Homo sapiens chromosome 15, clone RP11-682C24, complete sequence Length = 196918 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 actgttttagtctctgggt 103 ||||||||||||||||||| Sbjct: 508 actgttttagtctctgggt 490
>gb|AC096666.1| Homo sapiens BAC clone RP11-337O8 from 2, complete sequence Length = 133847 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 ccaatagtaactgttttag 94 ||||||||||||||||||| Sbjct: 9542 ccaatagtaactgttttag 9524
>gb|AC139362.2| Homo sapiens chromosome 15, clone RP11-580I1, complete sequence Length = 195033 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 actgttttagtctctgggt 103 ||||||||||||||||||| Sbjct: 170433 actgttttagtctctgggt 170415
>dbj|AK130373.1| Homo sapiens cDNA FLJ26863 fis, clone PRS08426 Length = 1703 Score = 38.2 bits (19), Expect = 6.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 67 ttgaactggccaatagtaactgt 89 |||||||| |||||||||||||| Sbjct: 864 ttgaactgtccaatagtaactgt 842
>gb|AF180356.1|AF180356 Brassica oleracea isolate B265 EIF4A protein (EIF4A) gene, partial cds; putative protein gene, complete cds; and casein kinase I-like protein (CK1b) gene, partial cds Length = 6639 Score = 38.2 bits (19), Expect = 6.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 atggaacaacctgatggcc 50 ||||||||||||||||||| Sbjct: 3894 atggaacaacctgatggcc 3912 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 922,772 Number of Sequences: 3902068 Number of extensions: 922772 Number of successful extensions: 60786 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60742 Number of HSP's gapped (non-prelim): 44 length of query: 145 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 124 effective length of database: 17,151,101,840 effective search space: 2126736628160 effective search space used: 2126736628160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
