ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC102129.9| Mus musculus chromosome 7, clone RP23-220N19, com... 38 5.9
2gb|AC160553.7| Mus musculus chromosome 7, clone RP23-334C12, com... 38 5.9
3tpg|BK000976.1| TPA: TPA_exp: Homo sapiens keratin 6l (KRT6L) ge... 38 5.9
4gb|AC158550.4| Mus musculus chromosome 7, clone RP24-192B7, comp... 38 5.9
5gb|AC107016.20| Homo sapiens 12 BAC RP11-153F5 (Roswell Park Can... 38 5.9

>gb|AC102129.9| Mus musculus chromosome 7, clone RP23-220N19, complete sequence
          Length = 178200

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 73    ccggacattgcataacaag 91
             |||||||||||||||||||
Sbjct: 88484 ccggacattgcataacaag 88502



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>gb|AC160553.7| Mus musculus chromosome 7, clone RP23-334C12, complete sequence
          Length = 191999

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 73     ccggacattgcataacaag 91
              |||||||||||||||||||
Sbjct: 189529 ccggacattgcataacaag 189547



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>tpg|BK000976.1| TPA: TPA_exp: Homo sapiens keratin 6l (KRT6L) gene, complete cds
          Length = 14386

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    gggagttggcacagcctac 57
             |||||||||||||||||||
Sbjct: 12670 gggagttggcacagcctac 12688



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>gb|AC158550.4| Mus musculus chromosome 7, clone RP24-192B7, complete sequence
          Length = 169846

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 73    ccggacattgcataacaag 91
             |||||||||||||||||||
Sbjct: 25964 ccggacattgcataacaag 25982



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>gb|AC107016.20| Homo sapiens 12 BAC RP11-153F5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 191947

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     gggagttggcacagcctac 57
              |||||||||||||||||||
Sbjct: 148997 gggagttggcacagcctac 149015


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 387,981
Number of Sequences: 3902068
Number of extensions: 387981
Number of successful extensions: 18418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18410
Number of HSP's gapped (non-prelim): 8
length of query: 126
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 105
effective length of database: 17,151,101,840
effective search space: 1800865693200
effective search space used: 1800865693200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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