ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13b16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC092728.2| Canis familiaris clone RP81-237O17, complete sequ... 42 0.34
2gb|AC097515.5| Homo sapiens BAC clone RP11-446J8 from 4, complet... 40 1.4
3gb|AC095019.2| Takifugu rubripes clone 249J24, complete sequence 38 5.4

>gb|AC092728.2| Canis familiaris clone RP81-237O17, complete sequence
          Length = 141578

 Score = 42.1 bits (21), Expect = 0.34
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     aaaccagagggggcaggagga 27
             |||||||||||||||||||||
Sbjct: 29427 aaaccagagggggcaggagga 29407



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>gb|AC097515.5| Homo sapiens BAC clone RP11-446J8 from 4, complete sequence
          Length = 165973

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    cagagggggcaggaggacag 30
             ||||||||||||||||||||
Sbjct: 12235 cagagggggcaggaggacag 12216



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>gb|AC095019.2| Takifugu rubripes clone 249J24, complete sequence
          Length = 86294

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    ggcaggaggacagtgtgag 36
             |||||||||||||||||||
Sbjct: 27691 ggcaggaggacagtgtgag 27709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 390,492
Number of Sequences: 3902068
Number of extensions: 390492
Number of successful extensions: 36680
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36676
Number of HSP's gapped (non-prelim): 4
length of query: 117
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 96
effective length of database: 17,151,101,840
effective search space: 1646505776640
effective search space used: 1646505776640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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