>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = -1

Query: 430 ASPTKRQRRCCPTCSSTMRS*GCASTRSSAAL*IPPRSRRKRTPMESSRKRRSSTGCWTD 251
           +SP ++ RR  P+ S   R       R S+    PP++R   TP +S+R R+S       
Sbjct: 377 SSPPRKTRRLSPSASPPRRR-----HRPSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPG 431

Query: 250 RSTGVYT 230
           R++G  T
Sbjct: 432 RTSGKVT 438

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 34.3 bits (77), Expect = 0.41
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -1

Query: 430 ASPTKRQRRCCPTCSSTMRS*GCASTRSSAAL*IPPRSRRKRTPMESSRKRRSSTGCWTD 251
           +SP ++ RR  P+ S   R       R S     PP++R   TP +S+R R+S       
Sbjct: 379 SSPPRKTRRLSPSASPPRRR-----HRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPG 433

Query: 250 RSTGVYT 230
           R++G  T
Sbjct: 434 RTSGKVT 440

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 34.3 bits (77), Expect = 0.41
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -1

Query: 430 ASPTKRQRRCCPTCSSTMRS*GCASTRSSAAL*IPPRSRRKRTPMESSRKRRSSTGCWTD 251
           +SP ++ RR  P+ S   R       R S     PP++R   TP +S+R R+S       
Sbjct: 379 SSPPRKTRRLSPSASPPRRR-----HRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPG 433

Query: 250 RSTGVYT 230
           R++G  T
Sbjct: 434 RTSGKVT 440

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 33.5 bits (75), Expect = 0.71
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -1

Query: 439 KT*ASPTKRQRRCCPTCSSTMRS*GCASTRSSAAL*IPPRSRRKRTPMESSRKRRS 272
           +T +SP ++ RR  P+ S   R       R S     PP+ RR  TP +S+R R+S
Sbjct: 373 RTVSSPPRKTRRLSPSASPPRRR-----HRPSPPASPPPKPRRSPTPQQSNRARKS 423


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,691,831
Number of Sequences: 219361
Number of extensions: 2098965
Number of successful extensions: 6079
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6072
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7706249192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)