Clone Name | rbasd13b15 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK067701.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114M13, full insert sequence Length = 2880 Score = 174 bits (88), Expect = 3e-40 Identities = 213/254 (83%), Gaps = 3/254 (1%) Strand = Plus / Minus Query: 436 tcttcgctgcccatggtaattgaggatttaccatcggaattttcgccatcatcagaagag 495 ||||| |||| |||||||| ||||||||||||||| ||||| || ||||||||||||||| Sbjct: 2185 tcttcactgctcatggtaactgaggatttaccatcagaattatcaccatcatcagaagag 2126 Query: 496 cccccctgttcgtcgtccagtgctagatgctgagcctgagcaacaagaaggcgtattcta 555 ||| ||||| || || ||| ||| | ||||||| ||||||||| | ||||||||| Sbjct: 2125 ccc---tgttcatcatctcgtgacagaagttgagcctcagcaacaagcaaacgtattcta 2069 Query: 556 ttgtctgatgtcgccagaaggtctagtgcatcaggcaaagatgatggatcaacagtcaag 615 ||||||||||||| || ||| |||| |||||||||||||||||| ||||| ||||| Sbjct: 2068 ttgtctgatgtcgtcacaagatctaaagcatcaggcaaagatgataaatcaatagtcata 2009 Query: 616 ttatcttgttcttctgcaagaaatttagcactacattcttgtagacgctcacggagcagt 675 | ||||| || ||||||| ||| || ||| ||||||| ||||||||||||||||||||| Sbjct: 2008 gtgtcttgctcatctgcaacaaacttggcagtacattcctgtagacgctcacggagcagt 1949 Query: 676 cggcattcgtgaag 689 | |||||||||||| Sbjct: 1948 ctgcattcgtgaag 1935
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 127 bits (64), Expect = 6e-26 Identities = 133/156 (85%) Strand = Plus / Plus Query: 534 agcaacaagaaggcgtattctattgtctgatgtcgccagaaggtctagtgcatcaggcaa 593 ||||||||| | |||||||||||||||||||||| || ||| |||| ||||||||||| Sbjct: 25807879 agcaacaagcaaacgtattctattgtctgatgtcgtcacaagatctaaagcatcaggcaa 25807938 Query: 594 agatgatggatcaacagtcaagttatcttgttcttctgcaagaaatttagcactacattc 653 ||||||| ||||| ||||| | ||||| || ||||||| ||| || ||| ||||||| Sbjct: 25807939 agatgataaatcaatagtcatagtgtcttgctcatctgcaacaaacttggcagtacattc 25807998 Query: 654 ttgtagacgctcacggagcagtcggcattcgtgaag 689 |||||||||||||||||||||| |||||||||||| Sbjct: 25807999 ctgtagacgctcacggagcagtctgcattcgtgaag 25808034 Score = 77.8 bits (39), Expect = 5e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 436 tcttcgctgcccatggtaattgaggatttaccatcggaattttcgccatcatcagaagag 495 ||||| |||| |||||||| ||||||||||||||| ||||| || ||||||||||||||| Sbjct: 25807099 tcttcactgctcatggtaactgaggatttaccatcagaattatcaccatcatcagaagag 25807158 Query: 496 ccc 498 ||| Sbjct: 25807159 ccc 25807161
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0416A11 Length = 171519 Score = 127 bits (64), Expect = 6e-26 Identities = 133/156 (85%) Strand = Plus / Plus Query: 534 agcaacaagaaggcgtattctattgtctgatgtcgccagaaggtctagtgcatcaggcaa 593 ||||||||| | |||||||||||||||||||||| || ||| |||| ||||||||||| Sbjct: 90083 agcaacaagcaaacgtattctattgtctgatgtcgtcacaagatctaaagcatcaggcaa 90142 Query: 594 agatgatggatcaacagtcaagttatcttgttcttctgcaagaaatttagcactacattc 653 ||||||| ||||| ||||| | ||||| || ||||||| ||| || ||| ||||||| Sbjct: 90143 agatgataaatcaatagtcatagtgtcttgctcatctgcaacaaacttggcagtacattc 90202 Query: 654 ttgtagacgctcacggagcagtcggcattcgtgaag 689 |||||||||||||||||||||| |||||||||||| Sbjct: 90203 ctgtagacgctcacggagcagtctgcattcgtgaag 90238 Score = 77.8 bits (39), Expect = 5e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 436 tcttcgctgcccatggtaattgaggatttaccatcggaattttcgccatcatcagaagag 495 ||||| |||| |||||||| ||||||||||||||| ||||| || ||||||||||||||| Sbjct: 89303 tcttcactgctcatggtaactgaggatttaccatcagaattatcaccatcatcagaagag 89362 Query: 496 ccc 498 ||| Sbjct: 89363 ccc 89365
>gb|AC165137.1| Pan troglodytes chromosome X clone PTB-012N04 map human ortholog p11.4, complete sequence Length = 93431 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 537 aacaagaaggcgtattctatt 557 ||||||||||||||||||||| Sbjct: 64748 aacaagaaggcgtattctatt 64768
>gb|AC092728.2| Canis familiaris clone RP81-237O17, complete sequence Length = 141578 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 aaaccagagggggcaggagga 132 ||||||||||||||||||||| Sbjct: 29427 aaaccagagggggcaggagga 29407
>emb|AL672185.7| Zebrafish DNA sequence from clone BUSM1-172P2 in linkage group 19 Contains the 3' part of the abcb3l2 gene for ATP-binding cassette, sub-family B (MDR/TAP), member 3 like 2, the 5' part of the mhc1uaa gene (major histocompatibility complex class I UAA protein) and four CpG islands, complete sequence Length = 47697 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 70 acaataatacaacaccatgacagtg 94 |||||||||||||||| |||||||| Sbjct: 10669 acaataatacaacaccctgacagtg 10693
>gb|AC096576.3| Homo sapiens BAC clone RP11-556G22 from 4, complete sequence Length = 213044 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 447 catggtaattgaggatttacc 467 ||||||||||||||||||||| Sbjct: 40364 catggtaattgaggatttacc 40384
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 339 gctgcggatgaccgagttgag 359 ||||||||||||||||||||| Sbjct: 2879159 gctgcggatgaccgagttgag 2879179
>gb|AC175366.1| Pan troglodytes chromosome X clone CH251-499L9 map human ortholog p11.4, complete sequence Length = 217335 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 537 aacaagaaggcgtattctatt 557 ||||||||||||||||||||| Sbjct: 160894 aacaagaaggcgtattctatt 160914
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 378 attgtcgatgagcaggtcggacagc 402 |||||||||||||||||| |||||| Sbjct: 1880535 attgtcgatgagcaggtccgacagc 1880559 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,415,773 Number of Sequences: 3902068 Number of extensions: 5415773 Number of successful extensions: 93622 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93515 Number of HSP's gapped (non-prelim): 107 length of query: 739 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 716 effective length of database: 17,143,297,704 effective search space: 12274601156064 effective search space used: 12274601156064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)