ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13b15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK067701.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 3e-40
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 127 6e-26
3dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic D... 127 6e-26
4gb|AC165137.1| Pan troglodytes chromosome X clone PTB-012N04 map... 42 2.6
5gb|AC092728.2| Canis familiaris clone RP81-237O17, complete sequ... 42 2.6
6emb|AL672185.7| Zebrafish DNA sequence from clone BUSM1-172P2 in... 42 2.6
7gb|AC096576.3| Homo sapiens BAC clone RP11-556G22 from 4, comple... 42 2.6
8gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 2.6
9gb|AC175366.1| Pan troglodytes chromosome X clone CH251-499L9 ma... 42 2.6
10gb|AE015924.1| Porphyromonas gingivalis W83, complete genome 42 2.6

>dbj|AK067701.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114M13, full
            insert sequence
          Length = 2880

 Score =  174 bits (88), Expect = 3e-40
 Identities = 213/254 (83%), Gaps = 3/254 (1%)
 Strand = Plus / Minus

                                                                        
Query: 436  tcttcgctgcccatggtaattgaggatttaccatcggaattttcgccatcatcagaagag 495
            ||||| |||| |||||||| ||||||||||||||| ||||| || |||||||||||||||
Sbjct: 2185 tcttcactgctcatggtaactgaggatttaccatcagaattatcaccatcatcagaagag 2126

                                                                        
Query: 496  cccccctgttcgtcgtccagtgctagatgctgagcctgagcaacaagaaggcgtattcta 555
            |||   ||||| || ||  |||  ||| | ||||||| ||||||||| |  |||||||||
Sbjct: 2125 ccc---tgttcatcatctcgtgacagaagttgagcctcagcaacaagcaaacgtattcta 2069

                                                                        
Query: 556  ttgtctgatgtcgccagaaggtctagtgcatcaggcaaagatgatggatcaacagtcaag 615
            ||||||||||||| || ||| ||||  ||||||||||||||||||  ||||| |||||  
Sbjct: 2068 ttgtctgatgtcgtcacaagatctaaagcatcaggcaaagatgataaatcaatagtcata 2009

                                                                        
Query: 616  ttatcttgttcttctgcaagaaatttagcactacattcttgtagacgctcacggagcagt 675
             | ||||| || ||||||| ||| || ||| ||||||| |||||||||||||||||||||
Sbjct: 2008 gtgtcttgctcatctgcaacaaacttggcagtacattcctgtagacgctcacggagcagt 1949

                          
Query: 676  cggcattcgtgaag 689
            | ||||||||||||
Sbjct: 1948 ctgcattcgtgaag 1935



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  127 bits (64), Expect = 6e-26
 Identities = 133/156 (85%)
 Strand = Plus / Plus

                                                                            
Query: 534      agcaacaagaaggcgtattctattgtctgatgtcgccagaaggtctagtgcatcaggcaa 593
                ||||||||| |  |||||||||||||||||||||| || ||| ||||  |||||||||||
Sbjct: 25807879 agcaacaagcaaacgtattctattgtctgatgtcgtcacaagatctaaagcatcaggcaa 25807938

                                                                            
Query: 594      agatgatggatcaacagtcaagttatcttgttcttctgcaagaaatttagcactacattc 653
                |||||||  ||||| |||||   | ||||| || ||||||| ||| || ||| |||||||
Sbjct: 25807939 agatgataaatcaatagtcatagtgtcttgctcatctgcaacaaacttggcagtacattc 25807998

                                                    
Query: 654      ttgtagacgctcacggagcagtcggcattcgtgaag 689
                 |||||||||||||||||||||| ||||||||||||
Sbjct: 25807999 ctgtagacgctcacggagcagtctgcattcgtgaag 25808034



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                            
Query: 436      tcttcgctgcccatggtaattgaggatttaccatcggaattttcgccatcatcagaagag 495
                ||||| |||| |||||||| ||||||||||||||| ||||| || |||||||||||||||
Sbjct: 25807099 tcttcactgctcatggtaactgaggatttaccatcagaattatcaccatcatcagaagag 25807158

                   
Query: 496      ccc 498
                |||
Sbjct: 25807159 ccc 25807161



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>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0416A11
          Length = 171519

 Score =  127 bits (64), Expect = 6e-26
 Identities = 133/156 (85%)
 Strand = Plus / Plus

                                                                         
Query: 534   agcaacaagaaggcgtattctattgtctgatgtcgccagaaggtctagtgcatcaggcaa 593
             ||||||||| |  |||||||||||||||||||||| || ||| ||||  |||||||||||
Sbjct: 90083 agcaacaagcaaacgtattctattgtctgatgtcgtcacaagatctaaagcatcaggcaa 90142

                                                                         
Query: 594   agatgatggatcaacagtcaagttatcttgttcttctgcaagaaatttagcactacattc 653
             |||||||  ||||| |||||   | ||||| || ||||||| ||| || ||| |||||||
Sbjct: 90143 agatgataaatcaatagtcatagtgtcttgctcatctgcaacaaacttggcagtacattc 90202

                                                 
Query: 654   ttgtagacgctcacggagcagtcggcattcgtgaag 689
              |||||||||||||||||||||| ||||||||||||
Sbjct: 90203 ctgtagacgctcacggagcagtctgcattcgtgaag 90238



 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                         
Query: 436   tcttcgctgcccatggtaattgaggatttaccatcggaattttcgccatcatcagaagag 495
             ||||| |||| |||||||| ||||||||||||||| ||||| || |||||||||||||||
Sbjct: 89303 tcttcactgctcatggtaactgaggatttaccatcagaattatcaccatcatcagaagag 89362

                
Query: 496   ccc 498
             |||
Sbjct: 89363 ccc 89365



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>gb|AC165137.1| Pan troglodytes chromosome X clone PTB-012N04 map human ortholog p11.4,
             complete sequence
          Length = 93431

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 537   aacaagaaggcgtattctatt 557
             |||||||||||||||||||||
Sbjct: 64748 aacaagaaggcgtattctatt 64768



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>gb|AC092728.2| Canis familiaris clone RP81-237O17, complete sequence
          Length = 141578

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 112   aaaccagagggggcaggagga 132
             |||||||||||||||||||||
Sbjct: 29427 aaaccagagggggcaggagga 29407



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>emb|AL672185.7| Zebrafish DNA sequence from clone BUSM1-172P2 in linkage group 19
             Contains the 3' part of the abcb3l2 gene for  ATP-binding
             cassette, sub-family B (MDR/TAP), member 3 like 2, the 5'
             part of the mhc1uaa gene (major histocompatibility complex
             class I UAA protein) and four CpG islands, complete
             sequence
          Length = 47697

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 70    acaataatacaacaccatgacagtg 94
             |||||||||||||||| ||||||||
Sbjct: 10669 acaataatacaacaccctgacagtg 10693



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>gb|AC096576.3| Homo sapiens BAC clone RP11-556G22 from 4, complete sequence
          Length = 213044

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 447   catggtaattgaggatttacc 467
             |||||||||||||||||||||
Sbjct: 40364 catggtaattgaggatttacc 40384



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 339     gctgcggatgaccgagttgag 359
               |||||||||||||||||||||
Sbjct: 2879159 gctgcggatgaccgagttgag 2879179



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>gb|AC175366.1| Pan troglodytes chromosome X clone CH251-499L9 map human ortholog p11.4,
              complete sequence
          Length = 217335

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 537    aacaagaaggcgtattctatt 557
              |||||||||||||||||||||
Sbjct: 160894 aacaagaaggcgtattctatt 160914



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>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome
          Length = 2343476

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 378     attgtcgatgagcaggtcggacagc 402
               |||||||||||||||||| ||||||
Sbjct: 1880535 attgtcgatgagcaggtccgacagc 1880559


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,415,773
Number of Sequences: 3902068
Number of extensions: 5415773
Number of successful extensions: 93622
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93515
Number of HSP's gapped (non-prelim): 107
length of query: 739
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 716
effective length of database: 17,143,297,704
effective search space: 12274601156064
effective search space used: 12274601156064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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