ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13b14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ890015.1| Triticum aestivum partial mRNA for putative high... 92 3e-16
2gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome... 40 1.1
3gb|AC155933.3| Mus musculus BAC clone RP23-89K6 from chromosome ... 40 1.1
4emb|CR450796.7| Zebrafish DNA sequence from clone CH211-9N7 in l... 38 4.5

>emb|AJ890015.1| Triticum aestivum partial mRNA for putative high mobility group
           protein (hmg1 gene), cultivar Wyuna, from endosperm
           tissue
          Length = 638

 Score = 91.7 bits (46), Expect = 3e-16
 Identities = 88/102 (86%), Gaps = 1/102 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgccgcagaccaggagnacgcatgctaaacattctcctnacanaacattacatcataagg 60
           |||| ||| ||||||| |||||| |||||||||||||| ||| |||||||||| || |||
Sbjct: 470 tgccacagcccaggagtacgcat-ctaaacattctccttacataacattacataatgagg 412

                                                     
Query: 61  acattgacatggcanggtaagccctaagcagcacgcgctgat 102
           |||| ||||||||| | ||| ||||||||||||  |||||||
Sbjct: 411 acatcgacatggcaagctaaaccctaagcagcaaacgctgat 370



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>gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome 7, complete sequence
          Length = 190553

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    atcataaggacattgacatg 71
             ||||||||||||||||||||
Sbjct: 55900 atcataaggacattgacatg 55881



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>gb|AC155933.3| Mus musculus BAC clone RP23-89K6 from chromosome 7, complete sequence
          Length = 265770

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    atcataaggacattgacatg 71
             ||||||||||||||||||||
Sbjct: 11305 atcataaggacattgacatg 11324



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>emb|CR450796.7| Zebrafish DNA sequence from clone CH211-9N7 in linkage group 11, complete
              sequence
          Length = 172794

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 52     atcataaggacattgacat 70
              |||||||||||||||||||
Sbjct: 144893 atcataaggacattgacat 144875


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 393,930
Number of Sequences: 3902068
Number of extensions: 393930
Number of successful extensions: 23859
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23854
Number of HSP's gapped (non-prelim): 5
length of query: 102
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 81
effective length of database: 17,151,101,840
effective search space: 1389239249040
effective search space used: 1389239249040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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