Clone Name | rbasd13b14 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | emb|AJ890015.1| Triticum aestivum partial mRNA for putative high... | 92 | 3e-16 | 2 | gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome... | 40 | 1.1 | 3 | gb|AC155933.3| Mus musculus BAC clone RP23-89K6 from chromosome ... | 40 | 1.1 | 4 | emb|CR450796.7| Zebrafish DNA sequence from clone CH211-9N7 in l... | 38 | 4.5 |
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>emb|AJ890015.1| Triticum aestivum partial mRNA for putative high mobility group protein (hmg1 gene), cultivar Wyuna, from endosperm tissue Length = 638 Score = 91.7 bits (46), Expect = 3e-16 Identities = 88/102 (86%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 1 tgccgcagaccaggagnacgcatgctaaacattctcctnacanaacattacatcataagg 60 |||| ||| ||||||| |||||| |||||||||||||| ||| |||||||||| || ||| Sbjct: 470 tgccacagcccaggagtacgcat-ctaaacattctccttacataacattacataatgagg 412 Query: 61 acattgacatggcanggtaagccctaagcagcacgcgctgat 102 |||| ||||||||| | ||| |||||||||||| ||||||| Sbjct: 411 acatcgacatggcaagctaaaccctaagcagcaaacgctgat 370
>gb|AC141638.3| Mus musculus BAC clone RP23-415K1 from chromosome 7, complete sequence Length = 190553 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 atcataaggacattgacatg 71 |||||||||||||||||||| Sbjct: 55900 atcataaggacattgacatg 55881
>gb|AC155933.3| Mus musculus BAC clone RP23-89K6 from chromosome 7, complete sequence Length = 265770 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 atcataaggacattgacatg 71 |||||||||||||||||||| Sbjct: 11305 atcataaggacattgacatg 11324
>emb|CR450796.7| Zebrafish DNA sequence from clone CH211-9N7 in linkage group 11, complete sequence Length = 172794 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 atcataaggacattgacat 70 ||||||||||||||||||| Sbjct: 144893 atcataaggacattgacat 144875 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 393,930 Number of Sequences: 3902068 Number of extensions: 393930 Number of successful extensions: 23859 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 23854 Number of HSP's gapped (non-prelim): 5 length of query: 102 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 81 effective length of database: 17,151,101,840 effective search space: 1389239249040 effective search space used: 1389239249040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)