ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APX4_ORYSA (Q6ZJJ1) Putative L-ascorbate peroxidase 4 (EC 1.11.1... 50 2e-06
2SC5A1_MOUSE (Q8C3K6) Sodium/glucose cotransporter 1 (Na(+)/gluco... 28 7.4
3SC5A1_PIG (P26429) Sodium/glucose cotransporter 1 (Na(+)/glucose... 27 9.7

>APX4_ORYSA (Q6ZJJ1) Putative L-ascorbate peroxidase 4 (EC 1.11.1.11)|
          Length = 291

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 25/48 (52%), Positives = 27/48 (56%)
 Frame = -2

Query: 332 FTPRSSGPASTKSDVSTXXXXXXXXXXXXXXXXXXXAGYLYEASKRSK 189
           FTPRSSGPASTKSD+ST                     YLYEASK+SK
Sbjct: 244 FTPRSSGPASTKSDLSTGAVLAQSAVGVAVAAAVVIVSYLYEASKKSK 291



to top

>SC5A1_MOUSE (Q8C3K6) Sodium/glucose cotransporter 1 (Na(+)/glucose|
           cotransporter 1) (High affinity sodium-glucose
           cotransporter)
          Length = 665

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 41  PQECMKYFETTVGCSSLEF 97
           P+EC KY  T VGC+++ +
Sbjct: 348 PEECQKYCGTPVGCTNIAY 366



to top

>SC5A1_PIG (P26429) Sodium/glucose cotransporter 1 (Na(+)/glucose|
           cotransporter 1) (High affinity sodium-glucose
           cotransporter) (Fragment)
          Length = 605

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 41  PQECMKYFETTVGCSSLEF 97
           P EC KY  T VGCS++ +
Sbjct: 291 PSECEKYCGTKVGCSNIAY 309


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,015,572
Number of Sequences: 219361
Number of extensions: 553257
Number of successful extensions: 1064
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top