ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BRC4_DROME (Q24206) Broad-complex core-protein isoform 6 33 0.66
2EX7L_XANAC (Q8PJW7) Probable exodeoxyribonuclease VII large subu... 31 3.3
3WBS14_HUMAN (Q9NP71) Williams-Beuren syndrome chromosome region ... 29 9.5
4LASP1_DROME (Q8I7C3) LIM and SH3 domain protein Lasp 29 9.5

>BRC4_DROME (Q24206) Broad-complex core-protein isoform 6|
          Length = 880

 Score = 33.1 bits (74), Expect = 0.66
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 333 PISLTPSVHRRHA--HDLDRRCYAHAHVHVH 419
           P+SL PS H+ HA  H+L      HAH H H
Sbjct: 599 PLSLLPSHHQLHATHHELSAAAAHHAHAHAH 629



to top

>EX7L_XANAC (Q8PJW7) Probable exodeoxyribonuclease VII large subunit (EC|
           3.1.11.6) (Exonuclease VII large subunit)
          Length = 445

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
 Frame = +3

Query: 261 MQHLSQHSL---LQSCDRCPAPCPIDQPISLTPSVHRRHAHDLDRRCYAHAHVHVHELFL 431
           M  L QH+L   +Q  DR         P +    +HRR   D  R+  A   +HV E   
Sbjct: 280 MTQLQQHALGNAMQRADRLALRLRAQSPQARLQLLHRRQ-EDAGRQLRARM-MHVLE--- 334

Query: 432 LFEQSRCCASTQEGNQTSQSHLDQTHLDGTSQ 527
                R  A  Q G    QSH  Q HL G  Q
Sbjct: 335 -----RLQARVQRGQAQLQSHNPQRHLAGLQQ 361



to top

>WBS14_HUMAN (Q9NP71) Williams-Beuren syndrome chromosome region 14 protein (WS|
           basic-helix-loop-helix leucine zipper protein) (WS-bHLH)
           (Mlx interactor) (MLX-interacting protein-like)
          Length = 852

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 234 PKFQVRSDEMQHLSQHSLLQSCDRCPAP 317
           P+    S  M HLS HS LQ+ + CP P
Sbjct: 338 PEVPPASSAMTHLSGHSRLQARNSCPGP 365



to top

>LASP1_DROME (Q8I7C3) LIM and SH3 domain protein Lasp|
          Length = 657

 Score = 29.3 bits (64), Expect = 9.5
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
 Frame = +3

Query: 189 QQQTTHKTSSNSKPQPKFQVRSDEMQHLSQHSLLQSCDRCPAPCPID----QPISLTPSV 356
           QQQ  H+     +   + Q +  + QH  QH L Q     P P PI        ++TP+ 
Sbjct: 180 QQQLQHQQQQQYQ---QHQQQLQQQQHQHQHYLQQQQQTLPPP-PIQHQQYNTAAITPTY 235

Query: 357 HRRHAHDLDRRCYAHAHVHVHELFLLFEQSRCCASTQEGNQTSQSHLDQ 503
            +       ++        +H+ +  ++Q +     Q+  Q  Q  L Q
Sbjct: 236 QQLQQQQQQQQQQRAQQQQLHDPYAHYQQPQALRQQQQQQQQQQQQLLQ 284


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,591,446
Number of Sequences: 219361
Number of extensions: 1363614
Number of successful extensions: 4287
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4284
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top