Clone Name | rbasd13a22 |
---|---|
Clone Library Name | barley_pub |
>gb|U49387.1|TAU49387 Triticum aestivum adenylosuccinate synthetase mRNA, partial cds Length = 1741 Score = 963 bits (486), Expect = 0.0 Identities = 622/663 (93%), Gaps = 7/663 (1%) Strand = Plus / Minus Query: 56 ataccaccaaaccatcggtggaatctataagacaaaatgctaccaccaaacaaaaacatt 115 ||||||||||||||| |||||| || | ||||||||||| ||||||||||| |||| | Sbjct: 1692 ataccaccaaaccattggtggagtcga-aagacaaaatgttaccaccaaactctaacact 1634 Query: 116 gcatccttatggtgatatatcttgggacattccccggaaatcattattgcaggtattaca 175 ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct: 1633 gcatccttatggtgatatatc--gggacatttcccggaaatcattattgcaggtattaca 1576 Query: 176 tcaccccgcctgccagtggcctgccgattgtattacccgctacaattggcaaatcaaggg 235 |||||||||| |||||| || || |||| |||||||||||||| |||||||| ||||||| Sbjct: 1575 tcaccccgcccgccagtagcttgtcgatcgtattacccgctacgattggcaa-tcaaggg 1517 Query: 236 tgtgctgacacagcaatgctcacacccgcctagttaagactgaattattctgtccgatac 295 |||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||| Sbjct: 1516 tgtgctgacacagcaatgctcacaacggcctagttaagactgaattatttcgtccgatac 1457 Query: 296 aatagtacccgatcgagtttgccctttacttgtatatgagagcatccctcccaggtccga 355 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct: 1456 aatagtaccaaatcgagtttgccctttacttgtatatcagagcatccctcccaggcccga 1397 Query: 356 caccaatgtagtggactggaacgccgacgagctcttctatcctctccacgtaacggcggg 415 |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 1396 caccaatgtagtggactggaacaccggcgagctcttctatcctctccacgtaacggcggg 1337 Query: 416 cggcttgggggagttcactgtaacttcggacagaagagatgtcactgtcccacccaggaa 475 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1336 cagcttgggggagttcactgtaacttcggacagaagatatgtcactgtcccacccaggaa 1277 Query: 476 gcacctcatagttgacctgtacttgctccagggtgtcaagatcccctgggaaggattgta 535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1276 gcacctcatagttgacctgtacttgctccagggtgtcaagatcccctgggaaggattgta 1217 Query: 536 gtttctgtccatcaatttgatgattataagaaacacccagcttaatttctggtaacccag 595 |||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| | Sbjct: 1216 gtttctctccatccatt---tgattataagaaacacccagcttaatttctggtaacccgg 1160 Query: 596 acagaacatcaagttttgttagattcagagatgaaaacccattaatgtcacagcagtatt 655 ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| Sbjct: 1159 acagaacatcaagttttgttagatttagagaggaaaacccattgatgtcacagcagtatt 1100 Query: 656 tcagtgcaacgatgtcaagccagccacaacgtcttggacgacctgtagtcgttccaaatt 715 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1099 tcagtgcaacgatgtcaagccagccacaacgtcttgggcgacctgtagtcgttccaaatt 1040 Query: 716 cca 718 ||| Sbjct: 1039 cca 1037
>dbj|AK066881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088J03, full insert sequence Length = 1662 Score = 406 bits (205), Expect = e-110 Identities = 351/399 (87%), Gaps = 3/399 (0%) Strand = Plus / Minus Query: 320 tttacttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgc 379 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | Sbjct: 1487 tttacttgtatattagagcatccctcccaggtccaacaccaatgtagtggactggaacac 1428 Query: 380 cgacgagctcttctatcctctccacgtaacggcgggcggcttgggggagttcactgtaac 439 | || ||||||||||||||||| || || || |||| ||| |||| ||||||||||||| Sbjct: 1427 caacaagctcttctatcctctcgacatagcgttgggcagctaggggaagttcactgtaac 1368 Query: 440 ttcggacagaagagatgtcactgtcccacccaggaagcacctcatagttgacctgtactt 499 | |||||||| || |||||||| | ||||||||| | ||||||||| ||||||||||||| Sbjct: 1367 tccggacagacgaaatgtcactttgccacccaggcaacacctcatatttgacctgtactt 1308 Query: 500 gctccagggtgtcaagatcccctgggaaggattgtagtttctgtccatcaatttgatgat 559 ||||||| || |||||||||||||||||||||||||| ||||| |||||| | || | Sbjct: 1307 gctccagagtatcaagatcccctgggaaggattgtagcttctgcccatca---ggttggt 1251 Query: 560 tataagaaacacccagcttaatttctggtaacccagacagaacatcaagttttgttagat 619 |||||||||| |||||||||| ||||||||| |||||||||||||||||||| || |||| Sbjct: 1250 tataagaaacccccagcttaacttctggtaatccagacagaacatcaagtttggtcagat 1191 Query: 620 tcagagatgaaaacccattaatgtcacagcagtatttcagtgcaacgatgtcaagccagc 679 | ||||||||||||||||| || || |||||||| || |||||||| ||||||||||||| Sbjct: 1190 taagagatgaaaacccatttatctcgcagcagtactttagtgcaacaatgtcaagccagc 1131 Query: 680 cacaacgtcttggacgacctgtagtcgttccaaattcca 718 ||||||| ||||| || ||||| ||||| |||||||||| Sbjct: 1130 cacaacgccttgggcggcctgttgtcgtcccaaattcca 1092
>gb|AY109844.1| Zea mays CL2010_1 mRNA sequence Length = 1804 Score = 303 bits (153), Expect = 4e-79 Identities = 338/399 (84%), Gaps = 3/399 (0%) Strand = Plus / Minus Query: 320 tttacttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgc 379 |||||||||||||||||||||| || |||||||| |||||||||||||| || ||||| | Sbjct: 1473 tttacttgtatatgagagcatctctgccaggtccaacaccaatgtagtgcacgggaacac 1414 Query: 380 cgacgagctcttctatcctctccacgtaacggcgggcggcttgggggagttcactgtaac 439 | || || ||||||||||||||||| || ||||||| |||||||| |||||| ||| | Sbjct: 1413 caacaagttcttctatcctctccacatagaggcgggcagcttggggaagttcatcgtatc 1354 Query: 440 ttcggacagaagagatgtcactgtcccacccaggaagcacctcatagttgacctgtactt 499 |||| |||||||| |||||||| | ||||||||| || |||||||||||||||||||||| Sbjct: 1353 ttcgaacagaagaaatgtcactttgccacccaggcagaacctcatagttgacctgtactt 1294 Query: 500 gctccagggtgtcaagatcccctgggaaggattgtagtttctgtccatcaatttgatgat 559 |||| ||||| ||||||||||| ||||||||||| || |||||||||||| | || Sbjct: 1293 gctcaagggtatcaagatccccagggaaggattgcagcttctgtccatcagt---ctggg 1237 Query: 560 tataagaaacacccagcttaatttctggtaacccagacagaacatcaagttttgttagat 619 ||||||||||||||| ||||||||||| ||||| ||||||||||| ||||| || |||| Sbjct: 1236 tataagaaacacccaccttaatttctgacaacccggacagaacatccagtttggtcagat 1177 Query: 620 tcagagatgaaaacccattaatgtcacagcagtatttcagtgcaacgatgtcaagccagc 679 | || ||||| |||||||| || | |||| || || || ||||| ||||||||||||| Sbjct: 1176 taagtgatgagaacccattgatttggcagctgtgcttaagcgcaacaatgtcaagccagc 1117 Query: 680 cacaacgtcttggacgacctgtagtcgttccaaattcca 718 | ||||| ||||| |||||||| || || |||||||||| Sbjct: 1116 cgcaacgccttgggcgacctgttgttgtgccaaattcca 1078
>gb|U49388.1|ZMU49388 Zea mays adenylosuccinate synthetase mRNA, complete cds Length = 1835 Score = 303 bits (153), Expect = 4e-79 Identities = 338/399 (84%), Gaps = 3/399 (0%) Strand = Plus / Minus Query: 320 tttacttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgc 379 |||||||||||||||||||||| || |||||||| |||||||||||||| || ||||| | Sbjct: 1473 tttacttgtatatgagagcatctctgccaggtccaacaccaatgtagtgcacgggaacac 1414 Query: 380 cgacgagctcttctatcctctccacgtaacggcgggcggcttgggggagttcactgtaac 439 | || || ||||||||||||||||| || ||||||| |||||||| |||||| ||| | Sbjct: 1413 caacaagttcttctatcctctccacatagaggcgggcagcttggggaagttcatcgtatc 1354 Query: 440 ttcggacagaagagatgtcactgtcccacccaggaagcacctcatagttgacctgtactt 499 |||| |||||||| |||||||| | ||||||||| || |||||||||||||||||||||| Sbjct: 1353 ttcgaacagaagaaatgtcactttgccacccaggcagaacctcatagttgacctgtactt 1294 Query: 500 gctccagggtgtcaagatcccctgggaaggattgtagtttctgtccatcaatttgatgat 559 |||| ||||| ||||||||||| ||||||||||| || |||||||||||| | || Sbjct: 1293 gctcaagggtatcaagatccccagggaaggattgcagcttctgtccatcagt---ctggg 1237 Query: 560 tataagaaacacccagcttaatttctggtaacccagacagaacatcaagttttgttagat 619 ||||||||||||||| ||||||||||| ||||| ||||||||||| ||||| || |||| Sbjct: 1236 tataagaaacacccaccttaatttctgacaacccggacagaacatccagtttggtcagat 1177 Query: 620 tcagagatgaaaacccattaatgtcacagcagtatttcagtgcaacgatgtcaagccagc 679 | || ||||| |||||||| || | |||| || || || ||||| ||||||||||||| Sbjct: 1176 taagtgatgagaacccattgatttggcagctgtgcttaagcgcaacaatgtcaagccagc 1117 Query: 680 cacaacgtcttggacgacctgtagtcgttccaaattcca 718 | ||||| ||||| |||||||| || || |||||||||| Sbjct: 1116 cgcaacgccttgggcgacctgttgttgtgccaaattcca 1078
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 236 bits (119), Expect = 8e-59 Identities = 202/229 (88%), Gaps = 3/229 (1%) Strand = Plus / Plus Query: 490 acctgtacttgctccagggtgtcaagatcccctgggaaggattgtagtttctgtccatca 549 ||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||||| Sbjct: 3969102 acctgtacttgctccagagtatcaagatcccctgggaaggattgtagcttctgcccatca 3969161 Query: 550 atttgatgattataagaaacacccagcttaatttctggtaacccagacagaacatcaagt 609 ||| | |||||||||| |||||||||| ||||||||| |||||||||||||||||| Sbjct: 3969162 ggttggt---tataagaaacccccagcttaacttctggtaatccagacagaacatcaagt 3969218 Query: 610 tttgttagattcagagatgaaaacccattaatgtcacagcagtatttcagtgcaacgatg 669 || || ||||| ||||||||||||||||| || || |||||||| || |||||||| ||| Sbjct: 3969219 ttggtcagattaagagatgaaaacccatttatctcgcagcagtactttagtgcaacaatg 3969278 Query: 670 tcaagccagccacaacgtcttggacgacctgtagtcgttccaaattcca 718 ||||||||||||||||| ||||| || ||||| ||||| |||||||||| Sbjct: 3969279 tcaagccagccacaacgccttgggcggcctgttgtcgtcccaaattcca 3969327 Score = 180 bits (91), Expect = 4e-42 Identities = 154/175 (88%) Strand = Plus / Plus Query: 320 tttacttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgc 379 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | Sbjct: 3968701 tttacttgtatattagagcatccctcccaggtccaacaccaatgtagtggactggaacac 3968760 Query: 380 cgacgagctcttctatcctctccacgtaacggcgggcggcttgggggagttcactgtaac 439 | || ||||||||||||||||| || || || |||| ||| |||| ||||||||||||| Sbjct: 3968761 caacaagctcttctatcctctcgacatagcgttgggcagctaggggaagttcactgtaac 3968820 Query: 440 ttcggacagaagagatgtcactgtcccacccaggaagcacctcatagttgacctg 494 | |||||||| || |||||||| | ||||||||| | ||||||||| |||||||| Sbjct: 3968821 tccggacagacgaaatgtcactttgccacccaggcaacacctcatatttgacctg 3968875 Score = 69.9 bits (35), Expect = 1e-08 Identities = 71/83 (85%) Strand = Plus / Minus Query: 325 ttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgccgacg 384 ||||||||||||||||| | ||| ||||| || || ||||| |||||||| | || || Sbjct: 27747371 ttgtatatgagagcatcacgccctggtcctacgccgatgtaatggactgggataccaacc 27747312 Query: 385 agctcttctatcctctccacgta 407 ||||||||||||||||||||||| Sbjct: 27747311 agctcttctatcctctccacgta 27747289 Score = 50.1 bits (25), Expect = 0.010 Identities = 61/73 (83%) Strand = Plus / Minus Query: 646 cagcagtatttcagtgcaacgatgtcaagccagccacaacgtcttggacgacctgtagtc 705 |||||||| || |||||||| || |||||||||||||| || || || |||||||| || Sbjct: 27746914 cagcagtacttgagtgcaactatatcaagccagccacagcgcctcggtcgacctgtcgtt 27746855 Query: 706 gttccaaattcca 718 || ||||| |||| Sbjct: 27746854 gtcccaaactcca 27746842
>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence Length = 153322 Score = 236 bits (119), Expect = 8e-59 Identities = 202/229 (88%), Gaps = 3/229 (1%) Strand = Plus / Minus Query: 490 acctgtacttgctccagggtgtcaagatcccctgggaaggattgtagtttctgtccatca 549 ||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||||| Sbjct: 130266 acctgtacttgctccagagtatcaagatcccctgggaaggattgtagcttctgcccatca 130207 Query: 550 atttgatgattataagaaacacccagcttaatttctggtaacccagacagaacatcaagt 609 ||| | |||||||||| |||||||||| ||||||||| |||||||||||||||||| Sbjct: 130206 ggttggt---tataagaaacccccagcttaacttctggtaatccagacagaacatcaagt 130150 Query: 610 tttgttagattcagagatgaaaacccattaatgtcacagcagtatttcagtgcaacgatg 669 || || ||||| ||||||||||||||||| || || |||||||| || |||||||| ||| Sbjct: 130149 ttggtcagattaagagatgaaaacccatttatctcgcagcagtactttagtgcaacaatg 130090 Query: 670 tcaagccagccacaacgtcttggacgacctgtagtcgttccaaattcca 718 ||||||||||||||||| ||||| || ||||| ||||| |||||||||| Sbjct: 130089 tcaagccagccacaacgccttgggcggcctgttgtcgtcccaaattcca 130041 Score = 180 bits (91), Expect = 4e-42 Identities = 154/175 (88%) Strand = Plus / Minus Query: 320 tttacttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgc 379 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | Sbjct: 130667 tttacttgtatattagagcatccctcccaggtccaacaccaatgtagtggactggaacac 130608 Query: 380 cgacgagctcttctatcctctccacgtaacggcgggcggcttgggggagttcactgtaac 439 | || ||||||||||||||||| || || || |||| ||| |||| ||||||||||||| Sbjct: 130607 caacaagctcttctatcctctcgacatagcgttgggcagctaggggaagttcactgtaac 130548 Query: 440 ttcggacagaagagatgtcactgtcccacccaggaagcacctcatagttgacctg 494 | |||||||| || |||||||| | ||||||||| | ||||||||| |||||||| Sbjct: 130547 tccggacagacgaaatgtcactttgccacccaggcaacacctcatatttgacctg 130493
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 236 bits (119), Expect = 8e-59 Identities = 202/229 (88%), Gaps = 3/229 (1%) Strand = Plus / Plus Query: 490 acctgtacttgctccagggtgtcaagatcccctgggaaggattgtagtttctgtccatca 549 ||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||||| Sbjct: 3969213 acctgtacttgctccagagtatcaagatcccctgggaaggattgtagcttctgcccatca 3969272 Query: 550 atttgatgattataagaaacacccagcttaatttctggtaacccagacagaacatcaagt 609 ||| | |||||||||| |||||||||| ||||||||| |||||||||||||||||| Sbjct: 3969273 ggttggt---tataagaaacccccagcttaacttctggtaatccagacagaacatcaagt 3969329 Query: 610 tttgttagattcagagatgaaaacccattaatgtcacagcagtatttcagtgcaacgatg 669 || || ||||| ||||||||||||||||| || || |||||||| || |||||||| ||| Sbjct: 3969330 ttggtcagattaagagatgaaaacccatttatctcgcagcagtactttagtgcaacaatg 3969389 Query: 670 tcaagccagccacaacgtcttggacgacctgtagtcgttccaaattcca 718 ||||||||||||||||| ||||| || ||||| ||||| |||||||||| Sbjct: 3969390 tcaagccagccacaacgccttgggcggcctgttgtcgtcccaaattcca 3969438 Score = 180 bits (91), Expect = 4e-42 Identities = 154/175 (88%) Strand = Plus / Plus Query: 320 tttacttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgc 379 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| | Sbjct: 3968812 tttacttgtatattagagcatccctcccaggtccaacaccaatgtagtggactggaacac 3968871 Query: 380 cgacgagctcttctatcctctccacgtaacggcgggcggcttgggggagttcactgtaac 439 | || ||||||||||||||||| || || || |||| ||| |||| ||||||||||||| Sbjct: 3968872 caacaagctcttctatcctctcgacatagcgttgggcagctaggggaagttcactgtaac 3968931 Query: 440 ttcggacagaagagatgtcactgtcccacccaggaagcacctcatagttgacctg 494 | |||||||| || |||||||| | ||||||||| | ||||||||| |||||||| Sbjct: 3968932 tccggacagacgaaatgtcactttgccacccaggcaacacctcatatttgacctg 3968986 Score = 69.9 bits (35), Expect = 1e-08 Identities = 71/83 (85%) Strand = Plus / Minus Query: 325 ttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgccgacg 384 ||||||||||||||||| | ||| ||||| || || ||||| |||||||| | || || Sbjct: 27838694 ttgtatatgagagcatcacgccctggtcctacgccgatgtaatggactgggataccaacc 27838635 Query: 385 agctcttctatcctctccacgta 407 ||||||||||||||||||||||| Sbjct: 27838634 agctcttctatcctctccacgta 27838612 Score = 50.1 bits (25), Expect = 0.010 Identities = 61/73 (83%) Strand = Plus / Minus Query: 646 cagcagtatttcagtgcaacgatgtcaagccagccacaacgtcttggacgacctgtagtc 705 |||||||| || |||||||| || |||||||||||||| || || || |||||||| || Sbjct: 27838237 cagcagtacttgagtgcaactatatcaagccagccacagcgcctcggtcgacctgtcgtt 27838178 Query: 706 gttccaaattcca 718 || ||||| |||| Sbjct: 27838177 gtcccaaactcca 27838165
>gb|AY106600.1| Zea mays PCO144935 mRNA sequence Length = 432 Score = 77.8 bits (39), Expect = 5e-11 Identities = 72/83 (86%) Strand = Plus / Minus Query: 325 ttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgccgacg 384 ||||||||||| || || | ||||| ||||||||||||||||| ||||||| |||||| Sbjct: 287 ttgtatatgagggcgtcgcgtccaggcccgacaccaatgtagtgtactggaatgccgacc 228 Query: 385 agctcttctatcctctccacgta 407 || || ||||||||||||||||| Sbjct: 227 agttcctctatcctctccacgta 205
>ref|XM_469397.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1470 Score = 69.9 bits (35), Expect = 1e-08 Identities = 71/83 (85%) Strand = Plus / Minus Query: 325 ttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgccgacg 384 ||||||||||||||||| | ||| ||||| || || ||||| |||||||| | || || Sbjct: 1466 ttgtatatgagagcatcacgccctggtcctacgccgatgtaatggactgggataccaacc 1407 Query: 385 agctcttctatcctctccacgta 407 ||||||||||||||||||||||| Sbjct: 1406 agctcttctatcctctccacgta 1384 Score = 50.1 bits (25), Expect = 0.010 Identities = 61/73 (83%) Strand = Plus / Minus Query: 646 cagcagtatttcagtgcaacgatgtcaagccagccacaacgtcttggacgacctgtagtc 705 |||||||| || |||||||| || |||||||||||||| || || || |||||||| || Sbjct: 1148 cagcagtacttgagtgcaactatatcaagccagccacagcgcctcggtcgacctgtcgtt 1089 Query: 706 gttccaaattcca 718 || ||||| |||| Sbjct: 1088 gtcccaaactcca 1076
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 69.9 bits (35), Expect = 1e-08 Identities = 71/83 (85%) Strand = Plus / Plus Query: 325 ttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgccgacg 384 ||||||||||||||||| | ||| ||||| || || ||||| |||||||| | || || Sbjct: 66523 ttgtatatgagagcatcacgccctggtcctacgccgatgtaatggactgggataccaacc 66582 Query: 385 agctcttctatcctctccacgta 407 ||||||||||||||||||||||| Sbjct: 66583 agctcttctatcctctccacgta 66605 Score = 50.1 bits (25), Expect = 0.010 Identities = 61/73 (83%) Strand = Plus / Plus Query: 646 cagcagtatttcagtgcaacgatgtcaagccagccacaacgtcttggacgacctgtagtc 705 |||||||| || |||||||| || |||||||||||||| || || || |||||||| || Sbjct: 66980 cagcagtacttgagtgcaactatatcaagccagccacagcgcctcggtcgacctgtcgtt 67039 Query: 706 gttccaaattcca 718 || ||||| |||| Sbjct: 67040 gtcccaaactcca 67052
>dbj|AK120407.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091H09, full insert sequence Length = 1742 Score = 69.9 bits (35), Expect = 1e-08 Identities = 71/83 (85%) Strand = Plus / Minus Query: 325 ttgtatatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgccgacg 384 ||||||||||||||||| | ||| ||||| || || ||||| |||||||| | || || Sbjct: 1508 ttgtatatgagagcatcacgccctggtcctacgccgatgtaatggactgggataccaacc 1449 Query: 385 agctcttctatcctctccacgta 407 ||||||||||||||||||||||| Sbjct: 1448 agctcttctatcctctccacgta 1426 Score = 50.1 bits (25), Expect = 0.010 Identities = 61/73 (83%) Strand = Plus / Minus Query: 646 cagcagtatttcagtgcaacgatgtcaagccagccacaacgtcttggacgacctgtagtc 705 |||||||| || |||||||| || |||||||||||||| || || || |||||||| || Sbjct: 1190 cagcagtacttgagtgcaactatatcaagccagccacagcgcctcggtcgacctgtcgtt 1131 Query: 706 gttccaaattcca 718 || ||||| |||| Sbjct: 1130 gtcccaaactcca 1118
>gb|AY429425.1| Nicotiana tabacum adenylosuccinate synthase (purA) mRNA, complete cds Length = 2009 Score = 65.9 bits (33), Expect = 2e-07 Identities = 75/89 (84%) Strand = Plus / Minus Query: 595 gacagaacatcaagttttgttagattcagagatgaaaacccattaatgtcacagcagtat 654 ||||||||||| ||||||||||| || ||||| | ||| ||||| || | ||||||| || Sbjct: 1282 gacagaacatctagttttgttaggtttagagaagcaaatccatttatctgacagcagaat 1223 Query: 655 ttcagtgcaacgatgtcaagccagccaca 683 |||||||||| ||||| ||||| ||||| Sbjct: 1222 ctcagtgcaactatgtctagccaaccaca 1194
>gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence Length = 105308 Score = 50.1 bits (25), Expect = 0.010 Identities = 100/125 (80%) Strand = Plus / Plus Query: 562 taagaaacacccagcttaatttctggtaacccagacagaacatcaagttttgttagattc 621 |||| |||||||| | ||||||||||| | ||||| || || |||||||| || || Sbjct: 39397 taagtaacacccaattgaatttctggtagatctgacagcacgtctagttttgtaaggtta 39456 Query: 622 agagatgaaaacccattaatgtcacagcagtatttcagtgcaacgatgtcaagccagcca 681 ||||| | ||| ||||| || | ||||||| ||||||| ||||| ||||| ||||| ||| Sbjct: 39457 agagaagcaaatccatttatttgacagcagaatttcagcgcaactatgtctagccaacca 39516 Query: 682 caacg 686 ||||| Sbjct: 39517 caacg 39521
>gb|AC104203.11| Mus musculus chromosome 5, clone RP24-301M6, complete sequence Length = 174779 Score = 48.1 bits (24), Expect = 0.040 Identities = 27/28 (96%) Strand = Plus / Plus Query: 543 tccatcaatttgatgattataagaaaca 570 ||||||||||||||| |||||||||||| Sbjct: 154661 tccatcaatttgatgcttataagaaaca 154688
>gb|AC143341.8| Medicago truncatula clone mth2-7a11, complete sequence Length = 111446 Score = 48.1 bits (24), Expect = 0.040 Identities = 63/76 (82%) Strand = Plus / Minus Query: 329 atatgagagcatccctcccaggtccgacaccaatgtagtggactggaacgccgacgagct 388 ||||||||||||| | ||||| || |||||||||||||| | || || || ||||| | Sbjct: 66201 atatgagagcatcacgtccaggcccaacaccaatgtagtgaatagggacaccaacgagtt 66142 Query: 389 cttctatcctctccac 404 |||||||||| ||||| Sbjct: 66141 cttctatcctttccac 66126
>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57 Length = 199577 Score = 48.1 bits (24), Expect = 0.040 Identities = 27/28 (96%) Strand = Plus / Plus Query: 83 taagacaaaatgctaccaccaaacaaaa 110 ||||| |||||||||||||||||||||| Sbjct: 183200 taagaaaaaatgctaccaccaaacaaaa 183227
>emb|AL021635.1|ATT12H17 Arabidopsis thaliana DNA chromosome 4, BAC clone T12H17 (ESSAII project) Length = 89350 Score = 48.1 bits (24), Expect = 0.040 Identities = 27/28 (96%) Strand = Plus / Plus Query: 83 taagacaaaatgctaccaccaaacaaaa 110 ||||| |||||||||||||||||||||| Sbjct: 39531 taagaaaaaatgctaccaccaaacaaaa 39558
>ref|NM_115621.2| Arabidopsis thaliana GTP binding / adenylosuccinate synthase AT3G57610 mRNA, complete cds Length = 1763 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 653 atttcagtgcaacgatgtcaagccagccaca 683 ||||||| ||||| ||||||||||||||||| Sbjct: 1199 atttcagggcaacaatgtcaagccagccaca 1169
>emb|AL049660.1|ATF15B8 Arabidopsis thaliana DNA chromosome 3, BAC clone F15B8 Length = 94378 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 653 atttcagtgcaacgatgtcaagccagccaca 683 ||||||| ||||| ||||||||||||||||| Sbjct: 74966 atttcagggcaacaatgtcaagccagccaca 74936
>gb|AY081461.1| Arabidopsis thaliana adenylosuccinate synthetase (At3g57610) mRNA, complete cds Length = 1509 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 653 atttcagtgcaacgatgtcaagccagccaca 683 ||||||| ||||| ||||||||||||||||| Sbjct: 1144 atttcagggcaacaatgtcaagccagccaca 1114
>dbj|AK220715.1| Arabidopsis thaliana mRNA for adenylosuccinate synthetase, partial cds, clone: RAFL22-04-L17 Length = 646 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 653 atttcagtgcaacgatgtcaagccagccaca 683 ||||||| ||||| ||||||||||||||||| Sbjct: 158 atttcagggcaacaatgtcaagccagccaca 128
>gb|AY054606.1| Arabidopsis thaliana adenylosuccinate synthetase (At3g57610; F15B8.200) mRNA, complete cds Length = 1717 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 653 atttcagtgcaacgatgtcaagccagccaca 683 ||||||| ||||| ||||||||||||||||| Sbjct: 1199 atttcagggcaacaatgtcaagccagccaca 1169
>emb|BX823799.1|CNS0A4WN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS76ZE05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1616 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 653 atttcagtgcaacgatgtcaagccagccaca 683 ||||||| ||||| ||||||||||||||||| Sbjct: 1190 atttcagggcaacaatgtcaagccagccaca 1160
>gb|AY085133.1| Arabidopsis thaliana clone 13259 mRNA, complete sequence Length = 1663 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 653 atttcagtgcaacgatgtcaagccagccaca 683 ||||||| ||||| ||||||||||||||||| Sbjct: 1189 atttcagggcaacaatgtcaagccagccaca 1159
>gb|U49389.1|ATU49389 Arabidopsis thaliana adenylosuccinate synthetase mRNA, complete cds Length = 1549 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 653 atttcagtgcaacgatgtcaagccagccaca 683 ||||||| ||||| ||||||||||||||||| Sbjct: 1177 atttcagggcaacaatgtcaagccagccaca 1147
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 tcattattgcaggtattacat 176 ||||||||||||||||||||| Sbjct: 3908044 tcattattgcaggtattacat 3908064
>gb|AF288738.1| Homo sapiens epidermal growth factor receptor (EGFR) gene, complete cds, alternatively spliced; and 5S ribosomal RNA gene, complete sequence Length = 197496 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 agagatgtcactgtcccacc 469 |||||||||||||||||||| Sbjct: 57194 agagatgtcactgtcccacc 57175
>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete sequence Length = 1085720 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 agagcatccctcccaggtccgaca 357 ||||||||| |||||||||||||| Sbjct: 322413 agagcatccttcccaggtccgaca 322390
>gb|AC120877.15| Mus musculus chromosome 6, clone RP24-548D19, complete sequence Length = 228206 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 gggtgtgctgacacagcaat 252 |||||||||||||||||||| Sbjct: 186618 gggtgtgctgacacagcaat 186599
>gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0015G13, complete sequence Length = 143966 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 ggaacgccgacgagctcttc 392 |||||||||||||||||||| Sbjct: 136092 ggaacgccgacgagctcttc 136111
>gb|AY323914.1| Brassica juncea CTR1-like kinase kinase kinase gene, complete cds Length = 6545 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 631 aacccattaatgtcacagca 650 |||||||||||||||||||| Sbjct: 998 aacccattaatgtcacagca 979
>gb|AY588246.1| Homo sapiens epidermal growth factor receptor (erythroblastic leukemia viral (v-erb-b) oncogene homolog, avian) (EGFR) gene, complete cds Length = 192168 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 agagatgtcactgtcccacc 469 |||||||||||||||||||| Sbjct: 49911 agagatgtcactgtcccacc 49892
>gb|AC159332.11| Mus musculus 6 BAC RP23-413D8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208808 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gggtgtgctgacacagcaat 252 |||||||||||||||||||| Sbjct: 177619 gggtgtgctgacacagcaat 177638
>ref|XM_567492.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNJ01140) partial mRNA Length = 630 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 agagcatccctcccaggtccgaca 357 ||||||||| |||||||||||||| Sbjct: 215 agagcatccttcccaggtccgaca 192
>gb|AC111131.8| Mus musculus, clone RP23-340N7, complete sequence Length = 202386 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 534 tagtttctgtccatcaatttgatg 557 |||||||||||||| ||||||||| Sbjct: 162483 tagtttctgtccattaatttgatg 162460
>ref|XM_758575.1| Theileria parva strain Muguga chromosome 4 adenylosuccinate synthase (TP04_0033) partial mRNA Length = 1305 Score = 40.1 bits (20), Expect = 9.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 661 gcaacgatgtcaagccagccacaacgtc 688 ||||||| ||||||||||||||| |||| Sbjct: 956 gcaacgaggtcaagccagccacagcgtc 929
>gb|AC146013.2| Pan troglodytes BAC clone RP43-128F23 from 7, complete sequence Length = 191821 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 agagatgtcactgtcccacc 469 |||||||||||||||||||| Sbjct: 139216 agagatgtcactgtcccacc 139235
>emb|AL122018.37|HSDJ764D2 Human DNA sequence from clone RP4-764D2 on chromosome 1q42.2-43 Contains the 5' end of the NID gene for nidogen (enactin) protein, an aconitase 2, mitochondrial (ACO2) pseudogene, the 5' end of the TM7SF1 gene for transmembrane 7 superfamily member 1 (upregulated in kidney) and two CpG islands, complete sequence Length = 128811 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ccgcctgccagtggcctgcc 200 |||||||||||||||||||| Sbjct: 101421 ccgcctgccagtggcctgcc 101440
>gb|AC104864.6| Homo sapiens chromosome 8, clone RP11-324E17, complete sequence Length = 168786 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 624 agatgaaaacccattaatgt 643 |||||||||||||||||||| Sbjct: 136036 agatgaaaacccattaatgt 136055
>gb|AC110761.3| Homo sapiens BAC clone RP11-45C13 from 4, complete sequence Length = 153458 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 666 gatgtcaagccagccacaac 685 |||||||||||||||||||| Sbjct: 35717 gatgtcaagccagccacaac 35736
>gb|AC156618.5| Mus musculus chromosome 3, clone RP24-372J15, complete sequence Length = 171545 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 agggtgtcaagatcccctgg 524 |||||||||||||||||||| Sbjct: 67577 agggtgtcaagatcccctgg 67596
>gb|AC159148.10| Mus musculus 10 BAC RP23-42M24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 166208 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 581 tttctggtaacccagacaga 600 |||||||||||||||||||| Sbjct: 58735 tttctggtaacccagacaga 58716
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 aatttgatgattataagaaa 568 |||||||||||||||||||| Sbjct: 27852801 aatttgatgattataagaaa 27852820
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 ggaacgccgacgagctcttc 392 |||||||||||||||||||| Sbjct: 6434353 ggaacgccgacgagctcttc 6434372
>gb|AC092384.5| Homo sapiens chromosome 16 clone RP11-830F9, complete sequence Length = 219070 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 455 tgtcactgtcccacccaggaagca 478 ||||||||||||||||||| |||| Sbjct: 121406 tgtcactgtcccacccagggagca 121383
>gb|AC006977.3|AC006977 Homo sapiens PAC clone RP5-1091E12 from 7p11.2-p21, complete sequence Length = 177998 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 agagatgtcactgtcccacc 469 |||||||||||||||||||| Sbjct: 57194 agagatgtcactgtcccacc 57175
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E03 Length = 159980 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 aatttgatgattataagaaa 568 |||||||||||||||||||| Sbjct: 16159 aatttgatgattataagaaa 16178
>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496C02 Length = 148419 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 aatttgatgattataagaaa 568 |||||||||||||||||||| Sbjct: 145180 aatttgatgattataagaaa 145199
>emb|BX004969.5| Zebrafish DNA sequence from clone CH211-89C12 in linkage group 7, complete sequence Length = 161142 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 545 catcaatttgatgattataa 564 |||||||||||||||||||| Sbjct: 56340 catcaatttgatgattataa 56321
>emb|BX005255.10| Mouse DNA sequence from clone RP23-228N14 on chromosome X, complete sequence Length = 230114 Score = 40.1 bits (20), Expect = 9.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 534 tagtttctgtccatcaatttgatg 557 |||||||||||||| ||||||||| Sbjct: 146326 tagtttctgtccattaatttgatg 146303
>emb|AL845516.8| Zebrafish DNA sequence from clone DKEY-43F11, complete sequence Length = 205826 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 545 catcaatttgatgattataa 564 |||||||||||||||||||| Sbjct: 186655 catcaatttgatgattataa 186674
>dbj|AK106865.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-C11, full insert sequence Length = 2055 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 ggaacgccgacgagctcttc 392 |||||||||||||||||||| Sbjct: 1041 ggaacgccgacgagctcttc 1060
>emb|AL731548.13| Mouse DNA sequence from clone RP23-71M18 on chromosome X, complete sequence Length = 218612 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 agttaagactgaattattct 286 |||||||||||||||||||| Sbjct: 176386 agttaagactgaattattct 176367
>emb|AL845264.18| Mouse DNA sequence from clone RP23-116F18 on chromosome 2, complete sequence Length = 207724 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 gtgtgctgacacagcaatgc 254 |||||||||||||||||||| Sbjct: 13962 gtgtgctgacacagcaatgc 13943
>gb|AC140790.3| Gallus gallus BAC clone TAM32-50D18 from chromosome ul, complete sequence Length = 176981 Score = 40.1 bits (20), Expect = 9.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 acagaagagatgtcactgtc 464 |||||||||||||||||||| Sbjct: 10965 acagaagagatgtcactgtc 10946 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,949,384 Number of Sequences: 3902068 Number of extensions: 5949384 Number of successful extensions: 104917 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104578 Number of HSP's gapped (non-prelim): 333 length of query: 718 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 695 effective length of database: 17,143,297,704 effective search space: 11914591904280 effective search space used: 11914591904280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)