ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GALT_CLOAB (Q97EZ4) Galactose-1-phosphate uridylyltransferase (E... 30 2.4
2RPP8_ARATH (Q8W4J9) Disease resistance protein RPP8 (Resistance ... 28 9.0

>GALT_CLOAB (Q97EZ4) Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)|
           (Gal-1-P uridylyltransferase)
           (UDP-glucose--hexose-1-phosphate uridylyltransferase)
          Length = 497

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
 Frame = +3

Query: 111 ISRANIYSFLSYLLIYKLTK*DNFFGLFRHPTQ*SVRIL---FNKILW-----NHRFCRS 266
           I++A +    SY       + + F+G   HP + ++RI+    NK  W      + +   
Sbjct: 159 IAKAKLSKSTSYPKCLLCKENEGFYGNINHPARQTLRIIPLELNKSKWFLQYSPYTYYNE 218

Query: 267 HCFSLNG*V*IPQRSFQKISFRVNFLSFIN 356
           HC  LN    IP +   +I+F  N LSFI+
Sbjct: 219 HCIILNN-EHIPMK-ISRITFE-NLLSFID 245



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>RPP8_ARATH (Q8W4J9) Disease resistance protein RPP8 (Resistance to Peronospora|
           parasitica protein 8)
          Length = 908

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 283 FKEKQWERQNL*FHRILLKRILTLHWV 203
           F+E  W R    FH + L R+L L WV
Sbjct: 560 FEEDYWIRSASVFHNLTLLRVLDLSWV 586


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,897,403
Number of Sequences: 219361
Number of extensions: 910629
Number of successful extensions: 1574
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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