ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BFAR_HUMAN (Q9NZS9) Bifunctional apoptosis regulator (RING finge... 31 2.8
2BFAR_RAT (Q5PQN2) Bifunctional apoptosis regulator 31 3.6
3BFAR_MOUSE (Q8R079) Bifunctional apoptosis regulator 30 4.8
4GALT_CLOAB (Q97EZ4) Galactose-1-phosphate uridylyltransferase (E... 30 6.2

>BFAR_HUMAN (Q9NZS9) Bifunctional apoptosis regulator (RING finger protein 47)|
          Length = 450

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +1

Query: 403 INPGGSLLLLKICSSSFKLQFFILY*FYYIDAF 501
           +NPG SL LL    SS +L    LY F Y D F
Sbjct: 263 VNPGRSLFLLYALKSSPRLSLLYLYLFDYTDTF 295



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>BFAR_RAT (Q5PQN2) Bifunctional apoptosis regulator|
          Length = 450

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +1

Query: 403 INPGGSLLLLKICSSSFKLQFFILY*FYYIDAF 501
           +NPG SL LL    SS +L    LY F Y D+F
Sbjct: 263 VNPGRSLFLLYALKSSPRLGLLYLYLFDYTDSF 295



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>BFAR_MOUSE (Q8R079) Bifunctional apoptosis regulator|
          Length = 450

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +1

Query: 403 INPGGSLLLLKICSSSFKLQFFILY*FYYIDAF 501
           +NPG SL LL    SS +L    LY F Y D F
Sbjct: 263 VNPGRSLFLLYALKSSPRLGLLYLYLFDYTDCF 295



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>GALT_CLOAB (Q97EZ4) Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)|
           (Gal-1-P uridylyltransferase)
           (UDP-glucose--hexose-1-phosphate uridylyltransferase)
          Length = 497

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
 Frame = +1

Query: 163 ISRANIYSFLSYLLIYKLTK*DNFFGLFRHPTQ*SVRIL---FNKILW-----NHRFCRS 318
           I++A +    SY       + + F+G   HP + ++RI+    NK  W      + +   
Sbjct: 159 IAKAKLSKSTSYPKCLLCKENEGFYGNINHPARQTLRIIPLELNKSKWFLQYSPYTYYNE 218

Query: 319 HCFSLNG*V*IPQRSFQKISFRVNFLSFIN 408
           HC  LN    IP +   +I+F  N LSFI+
Sbjct: 219 HCIILNN-EHIPMK-ISRITFE-NLLSFID 245


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,158,655
Number of Sequences: 219361
Number of extensions: 1411294
Number of successful extensions: 2517
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2515
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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