ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185391.2| Oryza sativa (japonica cultivar-group), mRNA 226 7e-56
2dbj|AK071761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 7e-56
3dbj|AK069834.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 7e-56
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 188 1e-44
5dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic ... 188 1e-44
6gb|AC123518.2| Oryza sativa (japonica cultivar-group) chromosome... 109 1e-20
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
8dbj|AK119192.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 1e-20
9dbj|AK069964.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 1e-20
10gb|AY111190.1| Zea mays CL6313_1 mRNA sequence 109 1e-20
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 109 1e-20
12gb|AY104583.1| Zea mays PCO092504 mRNA sequence 80 1e-11
13ref|NM_194617.1| Oryza sativa (japonica cultivar-group) putative... 52 0.002
14gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
15gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, c... 52 0.002
16dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
17dbj|AK119385.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
18dbj|AK108670.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
19gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 52 0.002
20emb|AL391995.7| Human DNA sequence from clone RP11-522N4 on chro... 42 2.1
21gb|AF200339.1|AF200339 Gallus gallus cone-type transducin alpha ... 42 2.1
22ref|NM_204690.1| Gallus gallus cone-type transducin alpha subuni... 42 2.1
23gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 8.3
24gb|AY812949.1| Schistosoma japonicum SJCHGC03441 protein mRNA, c... 40 8.3
25gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 8.3
26emb|CR293508.9| Zebrafish DNA sequence from clone CH211-13K20 in... 40 8.3
27emb|CR380958.1| Candida glabrata strain CBS138 chromosome L comp... 40 8.3
28gb|AC182716.2| Populus trichocarpa clone Pop1-88J20, complete se... 40 8.3
29gb|AC156615.7| Mus musculus chromosome 3, clone RP23-1B20, compl... 40 8.3
30gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 8.3
31dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.3
32gb|AF113720.1|AF113720 Pertusaria saximonticola small subunit ri... 40 8.3 
>ref|NM_185391.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3358

 Score =  226 bits (114), Expect = 7e-56
 Identities = 337/410 (82%), Gaps = 6/410 (1%)
 Strand = Plus / Minus

                                                                        
Query: 207  gaggagctgagctcggtggtgctgtagaaggactcttccgggcagaagcccccgtactcc 266
            |||||||||||||| |||||||||||||||||||| || ||| || | || ||    |||
Sbjct: 3109 gaggagctgagctctgtggtgctgtagaaggactcatctgggtagtacccacccccatcc 3050

                                                                        
Query: 267  ttctcgtcctcccaccggagcacctcccggatgtaccggaaggcctcgtcgatggtgggg 326
            ||||| ||||||||   ||||||||||| |||| ||  |||||||||||||| |||  | 
Sbjct: 3049 ttctcatcctcccatttgagcacctccctgatgaacttgaaggcctcgtcgacggtcagc 2990

                                                                        
Query: 327  ccgtcgcgggcacgcgcctgccacacaaagagcttccggtcgcccgtgtgagccgcatac 386
            | ||||||||| |||||||||||||| || ||||| || ||   ||||   || || |||
Sbjct: 2989 ctgtcgcgggctcgcgcctgccacacgaacagcttgcgatc---cgtgcaggcggcgtac 2933

                                                                        
Query: 387  aggttcttgaacttcatcgccacgtagaagaatgcctgctgcgccatcgactggttgttg 446
            |  | ||||||||||||||| || ||| |||| ||||| || |||| |||||| ||||||
Sbjct: 2932 aactccttgaacttcatcgcgacatagtagaacgcctggtgagccagcgactgattgttg 2873

                                                                        
Query: 447  tgg---gtgcggagcgggtcaaaatcgctgaaccactcgcaggcggtgagcggggcgcgc 503
            |||   || ||||| |||   || ||||||||||||||||||| || ||||||| |||||
Sbjct: 2872 tggtgagtccggagagggcagaagtcgctgaaccactcgcaggtggagagcgggacgcgc 2813

                                                                        
Query: 504  ccgatcttctcctcgaagaggtcgaacttgttgagcaccaggacgaatggcgtgtcacgg 563
            ||||| |||||||||||||||||||||||||||||||| || || |||||| |||| |||
Sbjct: 2812 ccgattttctcctcgaagaggtcgaacttgttgagcacaagaacaaatggcatgtcgcgg 2753

                                                              
Query: 564  aaagacgggtgcctgattgtgtcctcaaacaagtccctgctctgaatcat 613
            ||| | || |||||||||||  ||||||||||||||||||| || |||||
Sbjct: 2752 aaacatggttgcctgattgtagcctcaaacaagtccctgctttggatcat 2703
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>dbj|AK071761.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108P13, full
            insert sequence
          Length = 2374

 Score =  226 bits (114), Expect = 7e-56
 Identities = 337/410 (82%), Gaps = 6/410 (1%)
 Strand = Plus / Minus

                                                                        
Query: 207  gaggagctgagctcggtggtgctgtagaaggactcttccgggcagaagcccccgtactcc 266
            |||||||||||||| |||||||||||||||||||| || ||| || | || ||    |||
Sbjct: 2020 gaggagctgagctctgtggtgctgtagaaggactcatctgggtagtacccacccccatcc 1961

                                                                        
Query: 267  ttctcgtcctcccaccggagcacctcccggatgtaccggaaggcctcgtcgatggtgggg 326
            ||||| ||||||||   ||||||||||| |||| ||  |||||||||||||| |||  | 
Sbjct: 1960 ttctcatcctcccatttgagcacctccctgatgaacttgaaggcctcgtcgacggtcagc 1901

                                                                        
Query: 327  ccgtcgcgggcacgcgcctgccacacaaagagcttccggtcgcccgtgtgagccgcatac 386
            | ||||||||| |||||||||||||| || ||||| || ||   ||||   || || |||
Sbjct: 1900 ctgtcgcgggctcgcgcctgccacacgaacagcttgcgatc---cgtgcaggcggcgtac 1844

                                                                        
Query: 387  aggttcttgaacttcatcgccacgtagaagaatgcctgctgcgccatcgactggttgttg 446
            |  | ||||||||||||||| || ||| |||| ||||| || |||| |||||| ||||||
Sbjct: 1843 aactccttgaacttcatcgcgacatagtagaacgcctggtgagccagcgactgattgttg 1784

                                                                        
Query: 447  tgg---gtgcggagcgggtcaaaatcgctgaaccactcgcaggcggtgagcggggcgcgc 503
            |||   || ||||| |||   || ||||||||||||||||||| || ||||||| |||||
Sbjct: 1783 tggtgagtccggagagggcagaagtcgctgaaccactcgcaggtggagagcgggacgcgc 1724

                                                                        
Query: 504  ccgatcttctcctcgaagaggtcgaacttgttgagcaccaggacgaatggcgtgtcacgg 563
            ||||| |||||||||||||||||||||||||||||||| || || |||||| |||| |||
Sbjct: 1723 ccgattttctcctcgaagaggtcgaacttgttgagcacaagaacaaatggcatgtcgcgg 1664

                                                              
Query: 564  aaagacgggtgcctgattgtgtcctcaaacaagtccctgctctgaatcat 613
            ||| | || |||||||||||  ||||||||||||||||||| || |||||
Sbjct: 1663 aaacatggttgcctgattgtagcctcaaacaagtccctgctttggatcat 1614
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>dbj|AK069834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031J07, full
            insert sequence
          Length = 3358

 Score =  226 bits (114), Expect = 7e-56
 Identities = 337/410 (82%), Gaps = 6/410 (1%)
 Strand = Plus / Minus

                                                                        
Query: 207  gaggagctgagctcggtggtgctgtagaaggactcttccgggcagaagcccccgtactcc 266
            |||||||||||||| |||||||||||||||||||| || ||| || | || ||    |||
Sbjct: 3109 gaggagctgagctctgtggtgctgtagaaggactcatctgggtagtacccacccccatcc 3050

                                                                        
Query: 267  ttctcgtcctcccaccggagcacctcccggatgtaccggaaggcctcgtcgatggtgggg 326
            ||||| ||||||||   ||||||||||| |||| ||  |||||||||||||| |||  | 
Sbjct: 3049 ttctcatcctcccatttgagcacctccctgatgaacttgaaggcctcgtcgacggtcagc 2990

                                                                        
Query: 327  ccgtcgcgggcacgcgcctgccacacaaagagcttccggtcgcccgtgtgagccgcatac 386
            | ||||||||| |||||||||||||| || ||||| || ||   ||||   || || |||
Sbjct: 2989 ctgtcgcgggctcgcgcctgccacacgaacagcttgcgatc---cgtgcaggcggcgtac 2933

                                                                        
Query: 387  aggttcttgaacttcatcgccacgtagaagaatgcctgctgcgccatcgactggttgttg 446
            |  | ||||||||||||||| || ||| |||| ||||| || |||| |||||| ||||||
Sbjct: 2932 aactccttgaacttcatcgcgacatagtagaacgcctggtgagccagcgactgattgttg 2873

                                                                        
Query: 447  tgg---gtgcggagcgggtcaaaatcgctgaaccactcgcaggcggtgagcggggcgcgc 503
            |||   || ||||| |||   || ||||||||||||||||||| || ||||||| |||||
Sbjct: 2872 tggtgagtccggagagggcagaagtcgctgaaccactcgcaggtggagagcgggacgcgc 2813

                                                                        
Query: 504  ccgatcttctcctcgaagaggtcgaacttgttgagcaccaggacgaatggcgtgtcacgg 563
            ||||| |||||||||||||||||||||||||||||||| || || |||||| |||| |||
Sbjct: 2812 ccgattttctcctcgaagaggtcgaacttgttgagcacaagaacaaatggcatgtcgcgg 2753

                                                              
Query: 564  aaagacgggtgcctgattgtgtcctcaaacaagtccctgctctgaatcat 613
            ||| | || |||||||||||  ||||||||||||||||||| || |||||
Sbjct: 2752 aaacatggttgcctgattgtagcctcaaacaagtccctgctttggatcat 2703
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score =  188 bits (95), Expect = 1e-44
 Identities = 297/363 (81%), Gaps = 6/363 (1%)
 Strand = Plus / Plus

                                                                          
Query: 207    gaggagctgagctcggtggtgctgtagaaggactcttccgggcagaagcccccgtactcc 266
              |||||||||||||| |||||||||||||||||||| || ||| || | || ||    |||
Sbjct: 633617 gaggagctgagctctgtggtgctgtagaaggactcatctgggtagtacccacccccatcc 633676

                                                                          
Query: 267    ttctcgtcctcccaccggagcacctcccggatgtaccggaaggcctcgtcgatggtgggg 326
              ||||| ||||||||   ||||||||||| |||| ||  |||||||||||||| |||  | 
Sbjct: 633677 ttctcatcctcccatttgagcacctccctgatgaacttgaaggcctcgtcgacggtcagc 633736

                                                                          
Query: 327    ccgtcgcgggcacgcgcctgccacacaaagagcttccggtcgcccgtgtgagccgcatac 386
              | ||||||||| |||||||||||||| || ||||| || ||   ||||   || || |||
Sbjct: 633737 ctgtcgcgggctcgcgcctgccacacgaacagcttgcgatc---cgtgcaggcggcgtac 633793

                                                                          
Query: 387    aggttcttgaacttcatcgccacgtagaagaatgcctgctgcgccatcgactggttgttg 446
              |  | ||||||||||||||| || ||| |||| ||||| || |||| |||||| ||||||
Sbjct: 633794 aactccttgaacttcatcgcgacatagtagaacgcctggtgagccagcgactgattgttg 633853

                                                                          
Query: 447    tgg---gtgcggagcgggtcaaaatcgctgaaccactcgcaggcggtgagcggggcgcgc 503
              |||   || ||||| |||   || ||||||||||||||||||| || ||||||| |||||
Sbjct: 633854 tggtgagtccggagagggcagaagtcgctgaaccactcgcaggtggagagcgggacgcgc 633913

                                                                          
Query: 504    ccgatcttctcctcgaagaggtcgaacttgttgagcaccaggacgaatggcgtgtcacgg 563
              ||||| |||||||||||||||||||||||||||||||| || || |||||| |||| |||
Sbjct: 633914 ccgattttctcctcgaagaggtcgaacttgttgagcacaagaacaaatggcatgtcgcgg 633973

                 
Query: 564    aaa 566
              |||
Sbjct: 633974 aaa 633976



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 575    cctgattgtgtcctcaaacaagtccctgctctgaatcat 613
              |||||||||  ||||||||||||||||||| || |||||
Sbjct: 634345 cctgattgtagcctcaaacaagtccctgctttggatcat 634383
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>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
             clone:P0029D06
          Length = 150120

 Score =  188 bits (95), Expect = 1e-44
 Identities = 297/363 (81%), Gaps = 6/363 (1%)
 Strand = Plus / Plus

                                                                         
Query: 207   gaggagctgagctcggtggtgctgtagaaggactcttccgggcagaagcccccgtactcc 266
             |||||||||||||| |||||||||||||||||||| || ||| || | || ||    |||
Sbjct: 40045 gaggagctgagctctgtggtgctgtagaaggactcatctgggtagtacccacccccatcc 40104

                                                                         
Query: 267   ttctcgtcctcccaccggagcacctcccggatgtaccggaaggcctcgtcgatggtgggg 326
             ||||| ||||||||   ||||||||||| |||| ||  |||||||||||||| |||  | 
Sbjct: 40105 ttctcatcctcccatttgagcacctccctgatgaacttgaaggcctcgtcgacggtcagc 40164

                                                                         
Query: 327   ccgtcgcgggcacgcgcctgccacacaaagagcttccggtcgcccgtgtgagccgcatac 386
             | ||||||||| |||||||||||||| || ||||| || ||   ||||   || || |||
Sbjct: 40165 ctgtcgcgggctcgcgcctgccacacgaacagcttgcgatc---cgtgcaggcggcgtac 40221

                                                                         
Query: 387   aggttcttgaacttcatcgccacgtagaagaatgcctgctgcgccatcgactggttgttg 446
             |  | ||||||||||||||| || ||| |||| ||||| || |||| |||||| ||||||
Sbjct: 40222 aactccttgaacttcatcgcgacatagtagaacgcctggtgagccagcgactgattgttg 40281

                                                                         
Query: 447   tgg---gtgcggagcgggtcaaaatcgctgaaccactcgcaggcggtgagcggggcgcgc 503
             |||   || ||||| |||   || ||||||||||||||||||| || ||||||| |||||
Sbjct: 40282 tggtgagtccggagagggcagaagtcgctgaaccactcgcaggtggagagcgggacgcgc 40341

                                                                         
Query: 504   ccgatcttctcctcgaagaggtcgaacttgttgagcaccaggacgaatggcgtgtcacgg 563
             ||||| |||||||||||||||||||||||||||||||| || || |||||| |||| |||
Sbjct: 40342 ccgattttctcctcgaagaggtcgaacttgttgagcacaagaacaaatggcatgtcgcgg 40401

                
Query: 564   aaa 566
             |||
Sbjct: 40402 aaa 40404



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 575   cctgattgtgtcctcaaacaagtccctgctctgaatcat 613
             |||||||||  ||||||||||||||||||| || |||||
Sbjct: 40773 cctgattgtagcctcaaacaagtccctgctttggatcat 40811
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>gb|AC123518.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0088N01, complete sequence
          Length = 123954

 Score =  109 bits (55), Expect = 1e-20
 Identities = 230/287 (80%), Gaps = 6/287 (2%)
 Strand = Plus / Minus

                                                                         
Query: 267   ttctcgtcctcccaccggagcacctcccggatgtaccggaaggcctcgtcgatggtgggg 326
             ||||| |||||||||||||| | |||||  | ||||  ||| ||||||||||  ||  ||
Sbjct: 49082 ttctcatcctcccaccggaggatctccctcacgtacttgaacgcctcgtcgaccgtctgg 49023

                                                                         
Query: 327   ccgtcgcgggcacgcgcctgccacacaaagagcttccggtcgcccgtgtgagccgcatac 386
             | ||| |||||||||||||||||||| |||||||||||   |||||||||  |    |||
Sbjct: 49022 cggtcacgggcacgcgcctgccacacgaagagcttccg---gcccgtgtgctcgtagtac 48966

                                                                         
Query: 387   aggttcttgaacttcatcgccacgtagaagaatgcctgctgcgccatcgactggttgttg 446
             |||| ||||||||||| ||| |||||| || | |||||||| || | |||||||||||||
Sbjct: 48965 aggtccttgaacttcaccgctacgtagtagtacgcctgctgggcgagcgactggttgttg 48906

                                                                         
Query: 447   tgg---gtgcggagcgggtcaaaatcgctgaaccactcgcaggcggtgagcggggcgcgc 503
             |||   || || | ||||   || ||| |||||||||||||||  || || || ||||| 
Sbjct: 48905 tggtgtgtccgcaccggggagaagtcgttgaaccactcgcaggtcgttagaggtgcgcgg 48846

                                                            
Query: 504   ccgatcttctcctcgaagaggtcgaacttgttgagcaccaggacgaa 550
               |||||||||||| ||||||||  |||||||||| |||||||||||
Sbjct: 48845 ttgatcttctcctcaaagaggtcatacttgttgagtaccaggacgaa 48799
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  109 bits (55), Expect = 1e-20
 Identities = 230/287 (80%), Gaps = 6/287 (2%)
 Strand = Plus / Plus

                                                                           
Query: 267     ttctcgtcctcccaccggagcacctcccggatgtaccggaaggcctcgtcgatggtgggg 326
               ||||| |||||||||||||| | |||||  | ||||  ||| ||||||||||  ||  ||
Sbjct: 5301133 ttctcatcctcccaccggaggatctccctcacgtacttgaacgcctcgtcgaccgtctgg 5301192

                                                                           
Query: 327     ccgtcgcgggcacgcgcctgccacacaaagagcttccggtcgcccgtgtgagccgcatac 386
               | ||| |||||||||||||||||||| |||||||||||   |||||||||  |    |||
Sbjct: 5301193 cggtcacgggcacgcgcctgccacacgaagagcttccg---gcccgtgtgctcgtagtac 5301249

                                                                           
Query: 387     aggttcttgaacttcatcgccacgtagaagaatgcctgctgcgccatcgactggttgttg 446
               |||| ||||||||||| ||| |||||| || | |||||||| || | |||||||||||||
Sbjct: 5301250 aggtccttgaacttcaccgctacgtagtagtacgcctgctgggcgagcgactggttgttg 5301309

                                                                           
Query: 447     tgg---gtgcggagcgggtcaaaatcgctgaaccactcgcaggcggtgagcggggcgcgc 503
               |||   || || | ||||   || ||| |||||||||||||||  || || || ||||| 
Sbjct: 5301310 tggtgtgtccgcaccggggagaagtcgttgaaccactcgcaggtcgttagaggtgcgcgg 5301369

                                                              
Query: 504     ccgatcttctcctcgaagaggtcgaacttgttgagcaccaggacgaa 550
                 |||||||||||| ||||||||  |||||||||| |||||||||||
Sbjct: 5301370 ttgatcttctcctcaaagaggtcatacttgttgagtaccaggacgaa 5301416
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>dbj|AK119192.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-B11, full
            insert sequence
          Length = 1730

 Score =  109 bits (55), Expect = 1e-20
 Identities = 230/287 (80%), Gaps = 6/287 (2%)
 Strand = Plus / Minus

                                                                        
Query: 267  ttctcgtcctcccaccggagcacctcccggatgtaccggaaggcctcgtcgatggtgggg 326
            ||||| |||||||||||||| | |||||  | ||||  ||| ||||||||||  ||  ||
Sbjct: 1402 ttctcatcctcccaccggaggatctccctcacgtacttgaacgcctcgtcgaccgtctgg 1343

                                                                        
Query: 327  ccgtcgcgggcacgcgcctgccacacaaagagcttccggtcgcccgtgtgagccgcatac 386
            | ||| |||||||||||||||||||| |||||||||||   |||||||||  |    |||
Sbjct: 1342 cggtcacgggcacgcgcctgccacacgaagagcttccg---gcccgtgtgctcgtagtac 1286

                                                                        
Query: 387  aggttcttgaacttcatcgccacgtagaagaatgcctgctgcgccatcgactggttgttg 446
            |||| ||||||||||| ||| |||||| || | |||||||| || | |||||||||||||
Sbjct: 1285 aggtccttgaacttcaccgctacgtagtagtacgcctgctgggcgagcgactggttgttg 1226

                                                                        
Query: 447  tgg---gtgcggagcgggtcaaaatcgctgaaccactcgcaggcggtgagcggggcgcgc 503
            |||   || || | ||||   || ||| |||||||||||||||  || || || ||||| 
Sbjct: 1225 tggtgtgtccgcaccggggagaagtcgttgaaccactcgcaggtcgttagaggtgcgcgg 1166

                                                           
Query: 504  ccgatcttctcctcgaagaggtcgaacttgttgagcaccaggacgaa 550
              |||||||||||| ||||||||  |||||||||| |||||||||||
Sbjct: 1165 ttgatcttctcctcaaagaggtcatacttgttgagtaccaggacgaa 1119
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>dbj|AK069964.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039G05, full
            insert sequence
          Length = 3272

 Score =  109 bits (55), Expect = 1e-20
 Identities = 230/287 (80%), Gaps = 6/287 (2%)
 Strand = Plus / Minus

                                                                        
Query: 267  ttctcgtcctcccaccggagcacctcccggatgtaccggaaggcctcgtcgatggtgggg 326
            ||||| |||||||||||||| | |||||  | ||||  ||| ||||||||||  ||  ||
Sbjct: 2743 ttctcatcctcccaccggaggatctccctcacgtacttgaacgcctcgtcgaccgtctgg 2684

                                                                        
Query: 327  ccgtcgcgggcacgcgcctgccacacaaagagcttccggtcgcccgtgtgagccgcatac 386
            | ||| |||||||||||||||||||| |||||||||||   |||||||||  |    |||
Sbjct: 2683 cggtcacgggcacgcgcctgccacacgaagagcttccg---gcccgtgtgctcgtagtac 2627

                                                                        
Query: 387  aggttcttgaacttcatcgccacgtagaagaatgcctgctgcgccatcgactggttgttg 446
            |||| ||||||||||| ||| |||||| || | |||||||| || | |||||||||||||
Sbjct: 2626 aggtccttgaacttcaccgctacgtagtagtacgcctgctgggcgagcgactggttgttg 2567

                                                                        
Query: 447  tgg---gtgcggagcgggtcaaaatcgctgaaccactcgcaggcggtgagcggggcgcgc 503
            |||   || || | ||||   || ||| |||||||||||||||  || || || ||||| 
Sbjct: 2566 tggtgtgtccgcaccggggagaagtcgttgaaccactcgcaggtcgttagaggtgcgcgg 2507

                                                           
Query: 504  ccgatcttctcctcgaagaggtcgaacttgttgagcaccaggacgaa 550
              |||||||||||| ||||||||  |||||||||| |||||||||||
Sbjct: 2506 ttgatcttctcctcaaagaggtcatacttgttgagtaccaggacgaa 2460
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>gb|AY111190.1| Zea mays CL6313_1 mRNA sequence
          Length = 495

 Score =  109 bits (55), Expect = 1e-20
 Identities = 171/209 (81%), Gaps = 3/209 (1%)
 Strand = Plus / Plus

                                                                       
Query: 378 gccgcatacaggttcttgaacttcatcgccacgtagaagaatgcctgctgcgccatcgac 437
           ||||| ||||||| ||||||||| || ||||||||| |||| ||||||||||||| ||||
Sbjct: 277 gccgcgtacaggtccttgaacttgatggccacgtagtagaacgcctgctgcgccagcgac 336

                                                                       
Query: 438 tggttgttgtgg---gtgcggagcgggtcaaaatcgctgaaccactcgcaggcggtgagc 494
           ||| ||||||||   || || ||||||   || |||| |||||||||||| |  |  |||
Sbjct: 337 tggctgttgtggtgcgtccgcagcgggcagaagtcgccgaaccactcgcacgacgacagc 396

                                                                       
Query: 495 ggggcgcgcccgatcttctcctcgaagaggtcgaacttgttgagcaccaggacgaatggc 554
           ||||  ||||||||||||||||||||   |||| ||||||| ||||  || | ||| |||
Sbjct: 397 ggggaccgcccgatcttctcctcgaacgcgtcgtacttgttcagcaaaagcaggaacggc 456

                                        
Query: 555 gtgtcacggaaagacgggtgcctgattgt 583
           |||||||||||  |||| |||||||||||
Sbjct: 457 gtgtcacggaagcacggctgcctgattgt 485



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                           
Query: 269 ctcgtcctcccaccggagcacctcccggatgtaccggaaggcctcgtc 316
           |||||||||||||||||| |||||||||| ||| ||||||||||||||
Sbjct: 171 ctcgtcctcccaccggaggacctcccggacgtagcggaaggcctcgtc 218



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                               
Query: 200 gaggcgggaggagctgagctcggtggtgctgtagaaggactcttccgggcag 251
           ||||||||| ||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 102 gaggcgggacgagctgagctccgtggtgctgtagaaggactcgtcggggcag 153
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  109 bits (55), Expect = 1e-20
 Identities = 230/287 (80%), Gaps = 6/287 (2%)
 Strand = Plus / Plus

                                                                           
Query: 267     ttctcgtcctcccaccggagcacctcccggatgtaccggaaggcctcgtcgatggtgggg 326
               ||||| |||||||||||||| | |||||  | ||||  ||| ||||||||||  ||  ||
Sbjct: 5367610 ttctcatcctcccaccggaggatctccctcacgtacttgaacgcctcgtcgaccgtctgg 5367669

                                                                           
Query: 327     ccgtcgcgggcacgcgcctgccacacaaagagcttccggtcgcccgtgtgagccgcatac 386
               | ||| |||||||||||||||||||| |||||||||||   |||||||||  |    |||
Sbjct: 5367670 cggtcacgggcacgcgcctgccacacgaagagcttccg---gcccgtgtgctcgtagtac 5367726

                                                                           
Query: 387     aggttcttgaacttcatcgccacgtagaagaatgcctgctgcgccatcgactggttgttg 446
               |||| ||||||||||| ||| |||||| || | |||||||| || | |||||||||||||
Sbjct: 5367727 aggtccttgaacttcaccgctacgtagtagtacgcctgctgggcgagcgactggttgttg 5367786

                                                                           
Query: 447     tgg---gtgcggagcgggtcaaaatcgctgaaccactcgcaggcggtgagcggggcgcgc 503
               |||   || || | ||||   || ||| |||||||||||||||  || || || ||||| 
Sbjct: 5367787 tggtgtgtccgcaccggggagaagtcgttgaaccactcgcaggtcgttagaggtgcgcgg 5367846

                                                              
Query: 504     ccgatcttctcctcgaagaggtcgaacttgttgagcaccaggacgaa 550
                 |||||||||||| ||||||||  |||||||||| |||||||||||
Sbjct: 5367847 ttgatcttctcctcaaagaggtcatacttgttgagtaccaggacgaa 5367893
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>gb|AY104583.1| Zea mays PCO092504 mRNA sequence
          Length = 1093

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 179/224 (79%), Gaps = 6/224 (2%)
 Strand = Plus / Minus

                                                                       
Query: 333 cgggcacgcgcctgccacacaaagagcttccggtcgcccgtgtgagccgcatacaggttc 392
           |||||||| ||||||||||| || ||||||||||    ||| || || |  ||||||| |
Sbjct: 720 cgggcacgggcctgccacacgaaaagcttccggtt---cgtctgcgcagagtacaggtcc 664

                                                                       
Query: 393 ttgaacttcatcgccacgtagaagaatgcctgctgcgccatcgactggttgttgtgg--- 449
           ||||||||||| ||||||||| || ||||||| || |||| ||||||||||||||||   
Sbjct: 663 ttgaacttcatggccacgtagtagtatgcctgatgagccagcgactggttgttgtggtgc 604

                                                                       
Query: 450 gtgcggagcgggtcaaaatcgctgaaccactcgcaggcggtgagcggggcgcgcccgatc 509
           || || | ||||   || ||| ||||||||||||||   | ||| || |||||   ||||
Sbjct: 603 gtccgcaccgggcagaagtcgttgaaccactcgcagctagagaggggcgcgcggttgatc 544

                                                       
Query: 510 ttctcctcgaagaggtcgaacttgttgagcaccaggacgaatgg 553
           ||||||||||| |||||| ||||||| || ||||| || |||||
Sbjct: 543 ttctcctcgaaaaggtcgtacttgttcagaaccagaacaaatgg 500
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>ref|NM_194617.1| Oryza sativa (japonica cultivar-group) putative G-protein
            (OSJNBa0023I19.15), mRNA
          Length = 1752

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 285  agcacctcccggatgtaccggaaggcctcgtcga 318
            ||||||||||||||||||| |||||| |||||||
Sbjct: 1661 agcacctcccggatgtacctgaaggcgtcgtcga 1628



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 506  gatcttctcctcgaagaggtcgaacttgttgag 538
            ||||||||||||||||  |||| ||||||||||
Sbjct: 1434 gatcttctcctcgaaggcgtcgtacttgttgag 1402
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                 
Query: 285     agcacctcccggatgtaccggaaggcctcgtcga 318
               ||||||||||||||||||| |||||| |||||||
Sbjct: 1108993 agcacctcccggatgtacctgaaggcgtcgtcga 1108960



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 506     gatcttctcctcgaagaggtcgaacttgttgag 538
               ||||||||||||||||  |||| ||||||||||
Sbjct: 1108766 gatcttctcctcgaaggcgtcgtacttgttgag 1108734
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>gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, complete sequence
          Length = 157450

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                
Query: 285    agcacctcccggatgtaccggaaggcctcgtcga 318
              ||||||||||||||||||| |||||| |||||||
Sbjct: 106446 agcacctcccggatgtacctgaaggcgtcgtcga 106413



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 506    gatcttctcctcgaagaggtcgaacttgttgag 538
              ||||||||||||||||  |||| ||||||||||
Sbjct: 106219 gatcttctcctcgaaggcgtcgtacttgttgag 106187
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                 
Query: 285     agcacctcccggatgtaccggaaggcctcgtcga 318
               ||||||||||||||||||| |||||| |||||||
Sbjct: 1108993 agcacctcccggatgtacctgaaggcgtcgtcga 1108960



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 506     gatcttctcctcgaagaggtcgaacttgttgag 538
               ||||||||||||||||  |||| ||||||||||
Sbjct: 1108766 gatcttctcctcgaaggcgtcgtacttgttgag 1108734
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>dbj|AK119385.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-B11, full
            insert sequence
          Length = 2800

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 285  agcacctcccggatgtaccggaaggcctcgtcga 318
            ||||||||||||||||||| |||||| |||||||
Sbjct: 1301 agcacctcccggatgtacctgaaggcgtcgtcga 1268



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 506  gatcttctcctcgaagaggtcgaacttgttgag 538
            ||||||||||||||||  |||| ||||||||||
Sbjct: 1074 gatcttctcctcgaaggcgtcgtacttgttgag 1042
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>dbj|AK108670.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-H04, full
            insert sequence
          Length = 1631

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 285  agcacctcccggatgtaccggaaggcctcgtcga 318
            ||||||||||||||||||| |||||| |||||||
Sbjct: 1233 agcacctcccggatgtacctgaaggcgtcgtcga 1200



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 506  gatcttctcctcgaagaggtcgaacttgttgag 538
            ||||||||||||||||  |||| ||||||||||
Sbjct: 1006 gatcttctcctcgaaggcgtcgtacttgttgag 974
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                 
Query: 285     agcacctcccggatgtaccggaaggcctcgtcga 318
               ||||||||||||||||||| |||||| |||||||
Sbjct: 1108990 agcacctcccggatgtacctgaaggcgtcgtcga 1108957



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 506     gatcttctcctcgaagaggtcgaacttgttgag 538
               ||||||||||||||||  |||| ||||||||||
Sbjct: 1108763 gatcttctcctcgaaggcgtcgtacttgttgag 1108731
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>emb|AL391995.7| Human DNA sequence from clone RP11-522N4 on chromosome 13, complete
              sequence
          Length = 178920

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 7      tttccctttagctatatctat 27
              |||||||||||||||||||||
Sbjct: 150653 tttccctttagctatatctat 150633
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>gb|AF200339.1|AF200339 Gallus gallus cone-type transducin alpha subunit mRNA, complete cds
          Length = 1614

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 506 gatcttctcctcgaagaggtc 526
           |||||||||||||||||||||
Sbjct: 957 gatcttctcctcgaagaggtc 937
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>ref|NM_204690.1| Gallus gallus cone-type transducin alpha subunit (LOC395425), mRNA
          Length = 1614

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 506 gatcttctcctcgaagaggtc 526
           |||||||||||||||||||||
Sbjct: 957 gatcttctcctcgaagaggtc 937
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 315     tcgatggtggggccgtcgcg 334
               ||||||||||||||||||||
Sbjct: 1581139 tcgatggtggggccgtcgcg 1581158
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>gb|AY812949.1| Schistosoma japonicum SJCHGC03441 protein mRNA, complete cds
          Length = 634

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 178 gttgctgccagtcttgttcg 197
           ||||||||||||||||||||
Sbjct: 244 gttgctgccagtcttgttcg 263
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    gcctgctgcgccatcgactg 439
              ||||||||||||||||||||
Sbjct: 397964 gcctgctgcgccatcgactg 397983
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>emb|CR293508.9| Zebrafish DNA sequence from clone CH211-13K20 in linkage group 15,
              complete sequence
          Length = 168933

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     aacaagctgtatgtataaac 86
              ||||||||||||||||||||
Sbjct: 122699 aacaagctgtatgtataaac 122718
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>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence
          Length = 1440588

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     atgtataaacgttggcttag 96
              ||||||||||||||||||||
Sbjct: 732783 atgtataaacgttggcttag 732764
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>gb|AC182716.2| Populus trichocarpa clone Pop1-88J20, complete sequence
          Length = 33120

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 524   gtcgaacttgttgagcacca 543
             ||||||||||||||||||||
Sbjct: 11166 gtcgaacttgttgagcacca 11147
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>gb|AC156615.7| Mus musculus chromosome 3, clone RP23-1B20, complete sequence
          Length = 210003

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    actacacaccacaatggtcc 60
             ||||||||||||||||||||
Sbjct: 33128 actacacaccacaatggtcc 33147
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 523     ggtcgaacttgttgagcaccagga 546
               |||||| |||||||||||||||||
Sbjct: 1465154 ggtcgatcttgttgagcaccagga 1465131
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 269     ctcgtcctcccaccggagcacctc 292
               |||||||| |||||||||||||||
Sbjct: 8102516 ctcgtcctgccaccggagcacctc 8102493
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>gb|AF113720.1|AF113720 Pertusaria saximonticola small subunit ribosomal RNA gene, partial
            sequence
          Length = 1688

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 449  ggtgcggagcgggtcaaaat 468
            ||||||||||||||||||||
Sbjct: 1014 ggtgcggagcgggtcaaaat 995


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,464,116
Number of Sequences: 3902068
Number of extensions: 4464116
Number of successful extensions: 78612
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78177
Number of HSP's gapped (non-prelim): 425
length of query: 613
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 590
effective length of database: 17,143,297,704
effective search space: 10114545645360
effective search space used: 10114545645360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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