ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd13a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465295.1| Oryza sativa (japonica cultivar-group), mRNA 206 7e-50
2ref|XM_506794.1| PREDICTED Oryza sativa (japonica cultivar-group... 206 7e-50
3dbj|AK104165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 7e-50
4dbj|AK073631.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 7e-50
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
6dbj|AP005778.3| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
7dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
8ref|XM_450293.1| Oryza sativa (japonica cultivar-group), mRNA 62 3e-06
9ref|XM_506640.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 3e-06
10dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 62 3e-06
11dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic D... 62 3e-06
12dbj|AP005590.3| Oryza sativa (japonica cultivar-group) genomic D... 62 3e-06
13dbj|AK104010.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 3e-06
14dbj|AK061218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 3e-06
15gb|AY103837.1| Zea mays PCO137419 mRNA sequence 48 0.038
16ref|NM_113379.1| Arabidopsis thaliana unknown protein AT3G24680 ... 44 0.59
17emb|Y12363.1|ABFLCA A.brasilense flcA gene 44 0.59
18gb|DQ056608.1| Arabidopsis thaliana putative zinc finger protein... 44 0.59
19dbj|AP000740.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 44 0.59
20gb|L47193.1|ATHRETR Arabidopsis thaliana (clone DW15) zinc-finge... 44 0.59
21ref|XM_478258.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.3
22gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 42 2.3
23emb|CR847546.6| Zebrafish DNA sequence from clone CH211-261D5 in... 42 2.3
24dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
25dbj|AP003995.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
26dbj|AK070911.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
27gb|AY111262.1| Zea mays CL57609_1 mRNA sequence 42 2.3
28ref|XM_478243.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.2
29gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 9.2
30gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 9.2
31gb|AC131691.4| Mus musculus BAC clone RP23-388P2 from chromosome... 40 9.2
32emb|Y10787.1|SSY10787 S.stapfianus pSD.34 mRNA 40 9.2
33gb|AC124515.4| Mus musculus BAC clone RP23-381E19 from chromosom... 40 9.2
34gb|AC098708.3| Mus musculus BAC clone RP23-1I16 from 13, complet... 40 9.2
35gb|AC113518.9| Mus musculus chromosome 1, clone RP23-477L7, comp... 40 9.2
36gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 9.2
37ref|XM_963490.1| PREDICTED: Tribolium castaneum similar to CG100... 40 9.2
38emb|X70902.1|NTT85A N.tobacum T85 gene for auxin-binding protein 40 9.2
39emb|AL713870.26| Mouse DNA sequence from clone RP24-239D8 on chr... 40 9.2
40emb|AL731817.11| Mouse DNA sequence from clone RP23-3J16 on chro... 40 9.2
41gb|BC065953.1| Danio rerio RNA binding protein S1, serine-rich d... 40 9.2
42dbj|AK061939.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.2
43gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 9.2
44ref|NM_199761.1| Danio rerio RNA binding protein S1, serine-rich... 40 9.2
45gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 9.2
46dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
47dbj|AK120268.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.2
48gb|BC057251.1| Danio rerio RNA binding protein S1, serine-rich d... 40 9.2
49emb|CR846080.8| Zebrafish DNA sequence from clone DKEY-29P9 in l... 40 9.2
50emb|CR356238.10| Zebrafish DNA sequence from clone CH211-193K19 ... 40 9.2
51gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 9.2
52gb|AC154700.2| Mus musculus BAC clone RP24-344E15 from chromosom... 40 9.2
53emb|AL645848.15| Mouse DNA sequence from clone RP23-133B13 on ch... 40 9.2 
>ref|XM_465295.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 966

 Score =  206 bits (104), Expect = 7e-50
 Identities = 227/268 (84%)
 Strand = Plus / Minus

                                                                       
Query: 369 gatgtccagctccgcgttccccatcgggtcgtcgaagaatgtgtccttgtcgaacacgtc 428
           ||||||||||||||| || ||||| |  || |||| ||||||||| |||||  |||| ||
Sbjct: 378 gatgtccagctccgcattgcccattgcatcatcgatgaatgtgtctttgtcatacacttc 319

                                                                       
Query: 429 cagtttgacaggaacagtgggatcttcgacggagagggtgagctcgtcgttccactccgg 488
           |||| | |||||||| |  |||||||| |  ||||||||||| || ||||||||||||||
Sbjct: 318 cagtctaacaggaactgctggatcttcaatcgagagggtgagttcatcgttccactccgg 259

                                                                       
Query: 489 attgatgctcttcctcaccacccgcgtcttgagcttctgcttgcccatgcggacgacgac 548
           |||| |  ||||  | |  || || ||||| | ||||||||||||||||||||||| |||
Sbjct: 258 attggtagtcttttttatgactcgtgtcttcaacttctgcttgcccatgcggacgatgac 199

                                                                       
Query: 549 gtaggggtcgctggagcggaggtcgcggatggcgaggttcaccccgcgcgtcacccgcac 608
           ||||||||||||||||||||||||||||| ||||||||| || || | |  |||||||||
Sbjct: 198 gtaggggtcgctggagcggaggtcgcggacggcgaggttgacgcccctcaccacccgcac 139

                                       
Query: 609 cttcaccagcccaaccagatgccccaac 636
           ||||||||||||||||||||||||||||
Sbjct: 138 cttcaccagcccaaccagatgccccaac 111



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                       
Query: 157 gggatgtcgatccactggagctggagctcgacctccccgcactcgacgttcctgagcctg 216
           |||||||||| |||||| ||||||||||| |  |||||||| || || | ||| || |||
Sbjct: 587 gggatgtcgacccactgaagctggagctcaatttccccgcattccacatcccttagtctg 528

                                
Query: 217 agcaccacgtcctgcttcacc 237
           || |||||||| |||||||||
Sbjct: 527 agaaccacgtcttgcttcacc 507
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>ref|XM_506794.1| PREDICTED Oryza sativa (japonica cultivar-group), P0476C12.36 mRNA
          Length = 1059

 Score =  206 bits (104), Expect = 7e-50
 Identities = 227/268 (84%)
 Strand = Plus / Minus

                                                                       
Query: 369 gatgtccagctccgcgttccccatcgggtcgtcgaagaatgtgtccttgtcgaacacgtc 428
           ||||||||||||||| || ||||| |  || |||| ||||||||| |||||  |||| ||
Sbjct: 464 gatgtccagctccgcattgcccattgcatcatcgatgaatgtgtctttgtcatacacttc 405

                                                                       
Query: 429 cagtttgacaggaacagtgggatcttcgacggagagggtgagctcgtcgttccactccgg 488
           |||| | |||||||| |  |||||||| |  ||||||||||| || ||||||||||||||
Sbjct: 404 cagtctaacaggaactgctggatcttcaatcgagagggtgagttcatcgttccactccgg 345

                                                                       
Query: 489 attgatgctcttcctcaccacccgcgtcttgagcttctgcttgcccatgcggacgacgac 548
           |||| |  ||||  | |  || || ||||| | ||||||||||||||||||||||| |||
Sbjct: 344 attggtagtcttttttatgactcgtgtcttcaacttctgcttgcccatgcggacgatgac 285

                                                                       
Query: 549 gtaggggtcgctggagcggaggtcgcggatggcgaggttcaccccgcgcgtcacccgcac 608
           ||||||||||||||||||||||||||||| ||||||||| || || | |  |||||||||
Sbjct: 284 gtaggggtcgctggagcggaggtcgcggacggcgaggttgacgcccctcaccacccgcac 225

                                       
Query: 609 cttcaccagcccaaccagatgccccaac 636
           ||||||||||||||||||||||||||||
Sbjct: 224 cttcaccagcccaaccagatgccccaac 197



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                       
Query: 157 gggatgtcgatccactggagctggagctcgacctccccgcactcgacgttcctgagcctg 216
           |||||||||| |||||| ||||||||||| |  |||||||| || || | ||| || |||
Sbjct: 673 gggatgtcgacccactgaagctggagctcaatttccccgcattccacatcccttagtctg 614

                                
Query: 217 agcaccacgtcctgcttcacc 237
           || |||||||| |||||||||
Sbjct: 613 agaaccacgtcttgcttcacc 593
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>dbj|AK104165.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-C07, full
           insert sequence
          Length = 966

 Score =  206 bits (104), Expect = 7e-50
 Identities = 227/268 (84%)
 Strand = Plus / Minus

                                                                       
Query: 369 gatgtccagctccgcgttccccatcgggtcgtcgaagaatgtgtccttgtcgaacacgtc 428
           ||||||||||||||| || ||||| |  || |||| ||||||||| |||||  |||| ||
Sbjct: 378 gatgtccagctccgcattgcccattgcatcatcgatgaatgtgtctttgtcatacacttc 319

                                                                       
Query: 429 cagtttgacaggaacagtgggatcttcgacggagagggtgagctcgtcgttccactccgg 488
           |||| | |||||||| |  |||||||| |  ||||||||||| || ||||||||||||||
Sbjct: 318 cagtctaacaggaactgctggatcttcaatcgagagggtgagttcatcgttccactccgg 259

                                                                       
Query: 489 attgatgctcttcctcaccacccgcgtcttgagcttctgcttgcccatgcggacgacgac 548
           |||| |  ||||  | |  || || ||||| | ||||||||||||||||||||||| |||
Sbjct: 258 attggtagtcttttttatgactcgtgtcttcaacttctgcttgcccatgcggacgatgac 199

                                                                       
Query: 549 gtaggggtcgctggagcggaggtcgcggatggcgaggttcaccccgcgcgtcacccgcac 608
           ||||||||||||||||||||||||||||| ||||||||| || || | |  |||||||||
Sbjct: 198 gtaggggtcgctggagcggaggtcgcggacggcgaggttgacgcccctcaccacccgcac 139

                                       
Query: 609 cttcaccagcccaaccagatgccccaac 636
           ||||||||||||||||||||||||||||
Sbjct: 138 cttcaccagcccaaccagatgccccaac 111



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                       
Query: 157 gggatgtcgatccactggagctggagctcgacctccccgcactcgacgttcctgagcctg 216
           |||||||||| |||||| ||||||||||| |  |||||||| || || | ||| || |||
Sbjct: 587 gggatgtcgacccactgaagctggagctcaatttccccgcattccacatcccttagtctg 528

                                
Query: 217 agcaccacgtcctgcttcacc 237
           || |||||||| |||||||||
Sbjct: 527 agaaccacgtcttgcttcacc 507
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>dbj|AK073631.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052D22, full
           insert sequence
          Length = 1059

 Score =  206 bits (104), Expect = 7e-50
 Identities = 227/268 (84%)
 Strand = Plus / Minus

                                                                       
Query: 369 gatgtccagctccgcgttccccatcgggtcgtcgaagaatgtgtccttgtcgaacacgtc 428
           ||||||||||||||| || ||||| |  || |||| ||||||||| |||||  |||| ||
Sbjct: 464 gatgtccagctccgcattgcccattgcatcatcgatgaatgtgtctttgtcatacacttc 405

                                                                       
Query: 429 cagtttgacaggaacagtgggatcttcgacggagagggtgagctcgtcgttccactccgg 488
           |||| | |||||||| |  |||||||| |  ||||||||||| || ||||||||||||||
Sbjct: 404 cagtctaacaggaactgctggatcttcaatcgagagggtgagttcatcgttccactccgg 345

                                                                       
Query: 489 attgatgctcttcctcaccacccgcgtcttgagcttctgcttgcccatgcggacgacgac 548
           |||| |  ||||  | |  || || ||||| | ||||||||||||||||||||||| |||
Sbjct: 344 attggtagtcttttttatgactcgtgtcttcaacttctgcttgcccatgcggacgatgac 285

                                                                       
Query: 549 gtaggggtcgctggagcggaggtcgcggatggcgaggttcaccccgcgcgtcacccgcac 608
           ||||||||||||||||||||||||||||| ||||||||| || || | |  |||||||||
Sbjct: 284 gtaggggtcgctggagcggaggtcgcggacggcgaggttgacgcccctcaccacccgcac 225

                                       
Query: 609 cttcaccagcccaaccagatgccccaac 636
           ||||||||||||||||||||||||||||
Sbjct: 224 cttcaccagcccaaccagatgccccaac 197



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                       
Query: 157 gggatgtcgatccactggagctggagctcgacctccccgcactcgacgttcctgagcctg 216
           |||||||||| |||||| ||||||||||| |  |||||||| || || | ||| || |||
Sbjct: 673 gggatgtcgacccactgaagctggagctcaatttccccgcattccacatcccttagtctg 614

                                
Query: 217 agcaccacgtcctgcttcacc 237
           || |||||||| |||||||||
Sbjct: 613 agaaccacgtcttgcttcacc 593
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  159 bits (80), Expect = 1e-35
 Identities = 104/112 (92%)
 Strand = Plus / Minus

                                                                            
Query: 525      ctgcttgcccatgcggacgacgacgtaggggtcgctggagcggaggtcgcggatggcgag 584
                |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 13173187 ctgcttgcccatgcggacgatgacgtaggggtcgctggagcggaggtcgcggacggcgag 13173128

                                                                    
Query: 585      gttcaccccgcgcgtcacccgcaccttcaccagcccaaccagatgccccaac 636
                ||| || || | |  |||||||||||||||||||||||||||||||||||||
Sbjct: 13173127 gttgacgcccctcaccacccgcaccttcaccagcccaaccagatgccccaac 13173076



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                            
Query: 157      gggatgtcgatccactggagctggagctcgacctccccgcactcgacgttcctgagcctg 216
                |||||||||| |||||| ||||||||||| |  |||||||| || || | ||| || |||
Sbjct: 13174892 gggatgtcgacccactgaagctggagctcaatttccccgcattccacatcccttagtctg 13174833

                                     
Query: 217      agcaccacgtcctgcttcacc 237
                || |||||||| |||||||||
Sbjct: 13174832 agaaccacgtcttgcttcacc 13174812



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 460      gagagggtgagctcgtcgttccactccggattg 492
                ||||||||||| || ||||||||||||||||||
Sbjct: 13173559 gagagggtgagttcatcgttccactccggattg 13173527
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>dbj|AP005778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0042G06
          Length = 123571

 Score =  159 bits (80), Expect = 1e-35
 Identities = 104/112 (92%)
 Strand = Plus / Minus

                                                                         
Query: 525   ctgcttgcccatgcggacgacgacgtaggggtcgctggagcggaggtcgcggatggcgag 584
             |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 43217 ctgcttgcccatgcggacgatgacgtaggggtcgctggagcggaggtcgcggacggcgag 43158

                                                                 
Query: 585   gttcaccccgcgcgtcacccgcaccttcaccagcccaaccagatgccccaac 636
             ||| || || | |  |||||||||||||||||||||||||||||||||||||
Sbjct: 43157 gttgacgcccctcaccacccgcaccttcaccagcccaaccagatgccccaac 43106



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                         
Query: 157   gggatgtcgatccactggagctggagctcgacctccccgcactcgacgttcctgagcctg 216
             |||||||||| |||||| ||||||||||| |  |||||||| || || | ||| || |||
Sbjct: 44922 gggatgtcgacccactgaagctggagctcaatttccccgcattccacatcccttagtctg 44863

                                  
Query: 217   agcaccacgtcctgcttcacc 237
             || |||||||| |||||||||
Sbjct: 44862 agaaccacgtcttgcttcacc 44842



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 460   gagagggtgagctcgtcgttccactccggattg 492
             ||||||||||| || ||||||||||||||||||
Sbjct: 43589 gagagggtgagttcatcgttccactccggattg 43557
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>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0476C12
          Length = 157570

 Score =  159 bits (80), Expect = 1e-35
 Identities = 104/112 (92%)
 Strand = Plus / Minus

                                                                          
Query: 525    ctgcttgcccatgcggacgacgacgtaggggtcgctggagcggaggtcgcggatggcgag 584
              |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 149764 ctgcttgcccatgcggacgatgacgtaggggtcgctggagcggaggtcgcggacggcgag 149705

                                                                  
Query: 585    gttcaccccgcgcgtcacccgcaccttcaccagcccaaccagatgccccaac 636
              ||| || || | |  |||||||||||||||||||||||||||||||||||||
Sbjct: 149704 gttgacgcccctcaccacccgcaccttcaccagcccaaccagatgccccaac 149653



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                          
Query: 157    gggatgtcgatccactggagctggagctcgacctccccgcactcgacgttcctgagcctg 216
              |||||||||| |||||| ||||||||||| |  |||||||| || || | ||| || |||
Sbjct: 151469 gggatgtcgacccactgaagctggagctcaatttccccgcattccacatcccttagtctg 151410

                                   
Query: 217    agcaccacgtcctgcttcacc 237
              || |||||||| |||||||||
Sbjct: 151409 agaaccacgtcttgcttcacc 151389



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 460    gagagggtgagctcgtcgttccactccggattg 492
              ||||||||||| || ||||||||||||||||||
Sbjct: 150136 gagagggtgagttcatcgttccactccggattg 150104
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>ref|XM_450293.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 957

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                              
Query: 537 gcggacgacgacgtaggggtcgctggagcggaggtcgcggatggcgaggtt 587
           ||||||||||||||||||||||||||||  || ||| |||| |||||||||
Sbjct: 302 gcggacgacgacgtaggggtcgctggaggtgaagtcccggacggcgaggtt 252
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>ref|XM_506640.1| PREDICTED Oryza sativa (japonica cultivar-group), B1080A02.31 mRNA
          Length = 1001

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                              
Query: 537 gcggacgacgacgtaggggtcgctggagcggaggtcgcggatggcgaggtt 587
           ||||||||||||||||||||||||||||  || ||| |||| |||||||||
Sbjct: 317 gcggacgacgacgtaggggtcgctggaggtgaagtcccggacggcgaggtt 267
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                  
Query: 537     gcggacgacgacgtaggggtcgctggagcggaggtcgcggatggcgaggtt 587
               ||||||||||||||||||||||||||||  || ||| |||| |||||||||
Sbjct: 3895987 gcggacgacgacgtaggggtcgctggaggtgaagtcccggacggcgaggtt 3895937
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>dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1080A02
          Length = 151360

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                 
Query: 537    gcggacgacgacgtaggggtcgctggagcggaggtcgcggatggcgaggtt 587
              ||||||||||||||||||||||||||||  || ||| |||| |||||||||
Sbjct: 135503 gcggacgacgacgtaggggtcgctggaggtgaagtcccggacggcgaggtt 135453
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>dbj|AP005590.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0574F11
          Length = 159891

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                
Query: 537   gcggacgacgacgtaggggtcgctggagcggaggtcgcggatggcgaggtt 587
             ||||||||||||||||||||||||||||  || ||| |||| |||||||||
Sbjct: 27499 gcggacgacgacgtaggggtcgctggaggtgaagtcccggacggcgaggtt 27449
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>dbj|AK104010.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-C07, full
           insert sequence
          Length = 957

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                              
Query: 537 gcggacgacgacgtaggggtcgctggagcggaggtcgcggatggcgaggtt 587
           ||||||||||||||||||||||||||||  || ||| |||| |||||||||
Sbjct: 302 gcggacgacgacgtaggggtcgctggaggtgaagtcccggacggcgaggtt 252
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>dbj|AK061218.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-E07, full
           insert sequence
          Length = 1001

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                              
Query: 537 gcggacgacgacgtaggggtcgctggagcggaggtcgcggatggcgaggtt 587
           ||||||||||||||||||||||||||||  || ||| |||| |||||||||
Sbjct: 317 gcggacgacgacgtaggggtcgctggaggtgaagtcccggacggcgaggtt 267
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>gb|AY103837.1| Zea mays PCO137419 mRNA sequence
          Length = 868

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 168 ccactggagctggagctcgacctccccgcactcgacgttcctgagcctgagcaccacgtc 227
           |||||| ||||| ||||  | |||||||| ||||||||||||||||| ||| | || |||
Sbjct: 660 ccactgcagctgcagctgtatctccccgctctcgacgttcctgagccggaggatcatgtc 601

               
Query: 228 ctgc 231
           ||||
Sbjct: 600 ctgc 597
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>ref|NM_113379.1| Arabidopsis thaliana unknown protein AT3G24680 mRNA, complete cds
          Length = 1464

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 38  cttcgattctaaacatgattta 59
           ||||||||||||||||||||||
Sbjct: 243 cttcgattctaaacatgattta 264
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>emb|Y12363.1|ABFLCA A.brasilense flcA gene
          Length = 2517

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 231  cttcaccgtgccctcggacagg 252
            ||||||||||||||||||||||
Sbjct: 1801 cttcaccgtgccctcggacagg 1780
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>gb|DQ056608.1| Arabidopsis thaliana putative zinc finger protein (At3g24680) mRNA,
           complete cds
          Length = 1464

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 38  cttcgattctaaacatgattta 59
           ||||||||||||||||||||||
Sbjct: 243 cttcgattctaaacatgattta 264
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>dbj|AP000740.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MSD24
          Length = 40018

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 38    cttcgattctaaacatgattta 59
             ||||||||||||||||||||||
Sbjct: 28391 cttcgattctaaacatgattta 28370
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>gb|L47193.1|ATHRETR Arabidopsis thaliana (clone DW15) zinc-finger protein gene and
            reverse transcriptase gene, complete cds
          Length = 7808

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 38   cttcgattctaaacatgattta 59
            ||||||||||||||||||||||
Sbjct: 1682 cttcgattctaaacatgattta 1703
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>ref|XM_478258.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 965

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 537 gcggacgacgacgtaggggtcgctg 561
           ||||| |||||||||||||||||||
Sbjct: 304 gcggaggacgacgtaggggtcgctg 280
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 329     gcatctggacccgcatcctcgcggc 353
               ||||||||||||||||||| |||||
Sbjct: 2083243 gcatctggacccgcatcctggcggc 2083219



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 329     gcatctggacccgcatcctcgcggc 353
               ||||||||||||||||||| |||||
Sbjct: 1875873 gcatctggacccgcatcctggcggc 1875897



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 329     gcatctggacccgcatcctcgcggc 353
               ||||||||||||||||||| |||||
Sbjct: 1305593 gcatctggacccgcatcctggcggc 1305617



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 329    gcatctggacccgcatcctcgcggc 353
              ||||||||||||||||||| |||||
Sbjct: 739739 gcatctggacccgcatcctggcggc 739715
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>emb|CR847546.6| Zebrafish DNA sequence from clone CH211-261D5 in linkage group 1,
             complete sequence
          Length = 147811

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 90    ccaagagcagagagtgcagagctaa 114
             |||||||||||| ||||||||||||
Sbjct: 32551 ccaagagcagagtgtgcagagctaa 32575
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 537      gcggacgacgacgtaggggtcgctg 561
                ||||| |||||||||||||||||||
Sbjct: 18858510 gcggaggacgacgtaggggtcgctg 18858486



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 543      gacgacgtaggggtcgctgg 562
                ||||||||||||||||||||
Sbjct: 18786851 gacgacgtaggggtcgctgg 18786832
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>dbj|AP003995.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1112_F06
          Length = 104419

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 537   gcggacgacgacgtaggggtcgctg 561
             ||||| |||||||||||||||||||
Sbjct: 58696 gcggaggacgacgtaggggtcgctg 58672
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>dbj|AK070911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068D10, full
           insert sequence
          Length = 963

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 537 gcggacgacgacgtaggggtcgctg 561
           ||||| |||||||||||||||||||
Sbjct: 304 gcggaggacgacgtaggggtcgctg 280
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>gb|AY111262.1| Zea mays CL57609_1 mRNA sequence
          Length = 862

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 537 gcggacgacgacgtaggggtcgctg 561
           ||||| |||||||||||||||||||
Sbjct: 602 gcggaggacgacgtaggggtcgctg 626



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 463 agggtgagctcgtcgttccactccggattgat 494
           |||||||| || |||||||| |||||||||||
Sbjct: 528 agggtgagttcctcgttccattccggattgat 559
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>ref|XM_478243.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 854

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 543 gacgacgtaggggtcgctgg 562
           ||||||||||||||||||||
Sbjct: 178 gacgacgtaggggtcgctgg 159
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 571     tcgcggatggcgaggttcaccccg 594
               ||||||||||||||||||| ||||
Sbjct: 1421970 tcgcggatggcgaggttcagcccg 1421947
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    tcctgagcctgagcaccacg 225
              ||||||||||||||||||||
Sbjct: 338394 tcctgagcctgagcaccacg 338375
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>gb|AC131691.4| Mus musculus BAC clone RP23-388P2 from chromosome 16, complete sequence
          Length = 202652

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     aaacatgatttaccccagct 67
              ||||||||||||||||||||
Sbjct: 124116 aaacatgatttaccccagct 124097
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>emb|Y10787.1|SSY10787 S.stapfianus pSD.34 mRNA
          Length = 818

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 543 gacgacgtaggggtcgctgg 562
           ||||||||||||||||||||
Sbjct: 169 gacgacgtaggggtcgctgg 150
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>gb|AC124515.4| Mus musculus BAC clone RP23-381E19 from chromosome 13, complete sequence
          Length = 175354

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    cactggagctggagctcgac 188
              ||||||||||||||||||||
Sbjct: 136403 cactggagctggagctcgac 136422
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>gb|AC098708.3| Mus musculus BAC clone RP23-1I16 from 13, complete sequence
          Length = 200069

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 169  cactggagctggagctcgac 188
            ||||||||||||||||||||
Sbjct: 5229 cactggagctggagctcgac 5248
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>gb|AC113518.9| Mus musculus chromosome 1, clone RP23-477L7, complete sequence
          Length = 194281

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 428    ccagtttgacaggaacagtgggat 451
              ||||||| ||||||||||||||||
Sbjct: 119227 ccagtttaacaggaacagtgggat 119250
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 575    ggatggcgaggttcaccccg 594
              ||||||||||||||||||||
Sbjct: 854190 ggatggcgaggttcaccccg 854209
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>ref|XM_963490.1| PREDICTED: Tribolium castaneum similar to CG10047-PA (LOC657001),
           mRNA
          Length = 1323

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 546 gacgtaggggtcgctggagc 565
           ||||||||||||||||||||
Sbjct: 609 gacgtaggggtcgctggagc 590
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>emb|X70902.1|NTT85A N.tobacum T85 gene for auxin-binding protein
          Length = 6053

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ctgattaaagtttagaagcc 137
            ||||||||||||||||||||
Sbjct: 2600 ctgattaaagtttagaagcc 2619
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>emb|AL713870.26| Mouse DNA sequence from clone RP24-239D8 on chromosome 11 Contains the
             5' end of the Slc36a3 gene for solute carrier family 36
             (proton/amino acid symporter) member 3, two novel genes,
             the Tramd1 gene for tramdorin 1 (transmembrane domain rich
             protein), the Slc36a1 gene for solute carrier family 36
             (proton/amino acid symporter) member 1 and the gene for
             the ortholog of human and rat FAT tumor suppressor homolog
             2 (Drosophila) FAT2, complete sequence
          Length = 188782

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   tcgatccactggagctggag 182
             ||||||||||||||||||||
Sbjct: 18520 tcgatccactggagctggag 18501
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>emb|AL731817.11| Mouse DNA sequence from clone RP23-3J16 on chromosome 11 Contains a
             novel gene and the 3' end of a novel gene, complete
             sequence
          Length = 103582

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    ttttcacttgagaaagaact 86
             ||||||||||||||||||||
Sbjct: 29621 ttttcacttgagaaagaact 29602
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>gb|BC065953.1| Danio rerio RNA binding protein S1, serine-rich domain, mRNA (cDNA
           clone MGC:77278 IMAGE:6964816), complete cds
          Length = 1191

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 ctggagctggagctcgacct 190
           ||||||||||||||||||||
Sbjct: 210 ctggagctggagctcgacct 191
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>dbj|AK061939.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-D08, full
           insert sequence
          Length = 854

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 543 gacgacgtaggggtcgctgg 562
           ||||||||||||||||||||
Sbjct: 178 gacgacgtaggggtcgctgg 159
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 341     gcatcctcgcggcctccacc 360
               ||||||||||||||||||||
Sbjct: 2577631 gcatcctcgcggcctccacc 2577612
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>ref|NM_199761.1| Danio rerio RNA binding protein S1, serine-rich domain (rnps1),
           mRNA
          Length = 1328

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 ctggagctggagctcgacct 190
           ||||||||||||||||||||
Sbjct: 225 ctggagctggagctcgacct 206
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 300    cttcttcaccacggtgccgtcgaccccctgcatctggacc 339
              ||||| |||||||||||||||  | ||||||||| |||||
Sbjct: 550476 cttctgcaccacggtgccgtccgcgccctgcatcaggacc 550437
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>dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0055I24
          Length = 155872

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 543    gacgacgtaggggtcgctgg 562
              ||||||||||||||||||||
Sbjct: 119139 gacgacgtaggggtcgctgg 119120
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>dbj|AK120268.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047I20, full
           insert sequence
          Length = 953

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 543 gacgacgtaggggtcgctgg 562
           ||||||||||||||||||||
Sbjct: 181 gacgacgtaggggtcgctgg 162
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>gb|BC057251.1| Danio rerio RNA binding protein S1, serine-rich domain, mRNA (cDNA
           clone MGC:65775 IMAGE:6789117), complete cds
          Length = 1328

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 ctggagctggagctcgacct 190
           ||||||||||||||||||||
Sbjct: 225 ctggagctggagctcgacct 206
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>emb|CR846080.8| Zebrafish DNA sequence from clone DKEY-29P9 in linkage group 3,
             complete sequence
          Length = 242078

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   ctggagctggagctcgacct 190
             ||||||||||||||||||||
Sbjct: 46574 ctggagctggagctcgacct 46593
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>emb|CR356238.10| Zebrafish DNA sequence from clone CH211-193K19 in linkage group 19,
             complete sequence
          Length = 91311

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   tccactggagctggagctcg 186
             ||||||||||||||||||||
Sbjct: 30969 tccactggagctggagctcg 30988
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     accacggtgccgtcgacccc 326
               ||||||||||||||||||||
Sbjct: 3671212 accacggtgccgtcgacccc 3671193
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>gb|AC154700.2| Mus musculus BAC clone RP24-344E15 from chromosome 16, complete
             sequence
          Length = 199878

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   ccacgtcctgcttcaccgtg 240
             ||||||||||||||||||||
Sbjct: 60964 ccacgtcctgcttcaccgtg 60945
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>emb|AL645848.15| Mouse DNA sequence from clone RP23-133B13 on chromosome X, complete
              sequence
          Length = 175689

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 516    cttgagcttctgcttgccca 535
              ||||||||||||||||||||
Sbjct: 146903 cttgagcttctgcttgccca 146884


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,545,006
Number of Sequences: 3902068
Number of extensions: 4545006
Number of successful extensions: 87686
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86912
Number of HSP's gapped (non-prelim): 767
length of query: 672
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 649
effective length of database: 17,143,297,704
effective search space: 11126000209896
effective search space used: 11126000209896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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