ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd11p14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_481110.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.004
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
3dbj|AP005697.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
4ref|XM_481109.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.015
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
6dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
7dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
8dbj|AK069029.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.92
9gb|AC016582.9| Homo sapiens chromosome 19 clone CTD-2554C21, com... 40 3.6
10dbj|AP006158.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
11dbj|AP006064.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
12gb|AC007676.19|AC007676 Homo sapiens, clone RP11-9B17, complete ... 40 3.6

>ref|XM_481110.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1503

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 107/135 (79%)
 Strand = Plus / Minus

                                                                        
Query: 96   gcccgtcaaccagctccacatcgaagttccacaccattgncgcgacaatagtattcatct 155
            ||||||| |||| |||||| ||||||||||||||||  |  ||  | || || |||||||
Sbjct: 1445 gcccgtccaccacctccacgtcgaagttccacaccaccgcggccgcgatggtcttcatct 1386

                                                                        
Query: 156  gcataaatgagatgtccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatt 215
            |||| |  | ||||  ||||||  |||| |||||||| |||||| |||| ||||| || |
Sbjct: 1385 gcatcacggcgatgctcttgccggggcacatcctcggcccggagttgaacgccaagaact 1326

                           
Query: 216  tgtgagacggnacgt 230
            |||| ||||| ||||
Sbjct: 1325 tgtgcgacggcacgt 1311



to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 107/135 (79%)
 Strand = Plus / Plus

                                                                           
Query: 96      gcccgtcaaccagctccacatcgaagttccacaccattgncgcgacaatagtattcatct 155
               ||||||| |||| |||||| ||||||||||||||||  |  ||  | || || |||||||
Sbjct: 9952688 gcccgtccaccacctccacgtcgaagttccacaccaccgcggccgcgatggtcttcatct 9952747

                                                                           
Query: 156     gcataaatgagatgtccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatt 215
               |||| |  | ||||  ||||||  |||| |||||||| |||||| |||| ||||| || |
Sbjct: 9952748 gcatcacggcgatgctcttgccggggcacatcctcggcccggagttgaacgccaagaact 9952807

                              
Query: 216     tgtgagacggnacgt 230
               |||| ||||| ||||
Sbjct: 9952808 tgtgcgacggcacgt 9952822



 Score = 48.1 bits (24), Expect = 0.015
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                   
Query: 96      gcccgtcaaccagctccacatcgaagttccacacca 131
               ||||||| |||| |||||| ||||||||||||||||
Sbjct: 9950879 gcccgtccaccacctccacgtcgaagttccacacca 9950914



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 104      accagctccacatcgaagttccacacca 131
                |||| |||||| ||||||||||||||||
Sbjct: 10046597 accatctccacgtcgaagttccacacca 10046570



to top

>dbj|AP005697.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBb0005C03
          Length = 166423

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 107/135 (79%)
 Strand = Plus / Plus

                                                                          
Query: 96     gcccgtcaaccagctccacatcgaagttccacaccattgncgcgacaatagtattcatct 155
              ||||||| |||| |||||| ||||||||||||||||  |  ||  | || || |||||||
Sbjct: 99935  gcccgtccaccacctccacgtcgaagttccacaccaccgcggccgcgatggtcttcatct 99994

                                                                          
Query: 156    gcataaatgagatgtccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatt 215
              |||| |  | ||||  ||||||  |||| |||||||| |||||| |||| ||||| || |
Sbjct: 99995  gcatcacggcgatgctcttgccggggcacatcctcggcccggagttgaacgccaagaact 100054

                             
Query: 216    tgtgagacggnacgt 230
              |||| ||||| ||||
Sbjct: 100055 tgtgcgacggcacgt 100069



 Score = 48.1 bits (24), Expect = 0.015
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 96    gcccgtcaaccagctccacatcgaagttccacacca 131
             ||||||| |||| |||||| ||||||||||||||||
Sbjct: 98126 gcccgtccaccacctccacgtcgaagttccacacca 98161



to top

>ref|XM_481109.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 195

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 96  gcccgtcaaccagctccacatcgaagttccacacca 131
           ||||||| |||| |||||| ||||||||||||||||
Sbjct: 137 gcccgtccaccacctccacgtcgaagttccacacca 102



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 169      gtccttgccaaggcaaatcctcgggccgg 197
                ||||||||| |||||||||||||| ||||
Sbjct: 27082205 gtccttgccgaggcaaatcctcggcccgg 27082233



to top

>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1486_E07
          Length = 110494

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 169   gtccttgccaaggcaaatcctcgggccgg 197
             ||||||||| |||||||||||||| ||||
Sbjct: 53854 gtccttgccgaggcaaatcctcggcccgg 53882



to top

>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0461B08
          Length = 153743

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 169    gtccttgccaaggcaaatcctcgggccgg 197
              ||||||||| |||||||||||||| ||||
Sbjct: 135407 gtccttgccgaggcaaatcctcggcccgg 135435



to top

>dbj|AK069029.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003E06, full
            insert sequence
          Length = 2118

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 169  gtccttgccaaggcaaatcctcgggccgg 197
            ||||||||| |||||||||||||| ||||
Sbjct: 1523 gtccttgccgaggcaaatcctcggcccgg 1495



to top

>gb|AC016582.9| Homo sapiens chromosome 19 clone CTD-2554C21, complete sequence
          Length = 188712

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   aaatgagatgtccttgccaa 179
             ||||||||||||||||||||
Sbjct: 33310 aaatgagatgtccttgccaa 33329



to top

>dbj|AP006158.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1127C04
          Length = 121441

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 104   accagctccacatcgaagttccacacca 131
             |||| |||||| ||||||||||||||||
Sbjct: 86499 accatctccacgtcgaagttccacacca 86472



to top

>dbj|AP006064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBa0023I13
          Length = 165911

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 104  accagctccacatcgaagttccacacca 131
            |||| |||||| ||||||||||||||||
Sbjct: 5943 accatctccacgtcgaagttccacacca 5916



to top

>gb|AC007676.19|AC007676 Homo sapiens, clone RP11-9B17, complete sequence
          Length = 152138

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    aaatgagatgtccttgccaa 179
              ||||||||||||||||||||
Sbjct: 102181 aaatgagatgtccttgccaa 102200


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,678,485
Number of Sequences: 3902068
Number of extensions: 1678485
Number of successful extensions: 26757
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26698
Number of HSP's gapped (non-prelim): 59
length of query: 278
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 256
effective length of database: 17,147,199,772
effective search space: 4389683141632
effective search space used: 4389683141632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top