Clone Name | rbasd11p14 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_481110.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1503 Score = 50.1 bits (25), Expect = 0.004 Identities = 107/135 (79%) Strand = Plus / Minus Query: 96 gcccgtcaaccagctccacatcgaagttccacaccattgncgcgacaatagtattcatct 155 ||||||| |||| |||||| |||||||||||||||| | || | || || ||||||| Sbjct: 1445 gcccgtccaccacctccacgtcgaagttccacaccaccgcggccgcgatggtcttcatct 1386 Query: 156 gcataaatgagatgtccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatt 215 |||| | | |||| |||||| |||| |||||||| |||||| |||| ||||| || | Sbjct: 1385 gcatcacggcgatgctcttgccggggcacatcctcggcccggagttgaacgccaagaact 1326 Query: 216 tgtgagacggnacgt 230 |||| ||||| |||| Sbjct: 1325 tgtgcgacggcacgt 1311
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 50.1 bits (25), Expect = 0.004 Identities = 107/135 (79%) Strand = Plus / Plus Query: 96 gcccgtcaaccagctccacatcgaagttccacaccattgncgcgacaatagtattcatct 155 ||||||| |||| |||||| |||||||||||||||| | || | || || ||||||| Sbjct: 9952688 gcccgtccaccacctccacgtcgaagttccacaccaccgcggccgcgatggtcttcatct 9952747 Query: 156 gcataaatgagatgtccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatt 215 |||| | | |||| |||||| |||| |||||||| |||||| |||| ||||| || | Sbjct: 9952748 gcatcacggcgatgctcttgccggggcacatcctcggcccggagttgaacgccaagaact 9952807 Query: 216 tgtgagacggnacgt 230 |||| ||||| |||| Sbjct: 9952808 tgtgcgacggcacgt 9952822 Score = 48.1 bits (24), Expect = 0.015 Identities = 33/36 (91%) Strand = Plus / Plus Query: 96 gcccgtcaaccagctccacatcgaagttccacacca 131 ||||||| |||| |||||| |||||||||||||||| Sbjct: 9950879 gcccgtccaccacctccacgtcgaagttccacacca 9950914 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 104 accagctccacatcgaagttccacacca 131 |||| |||||| |||||||||||||||| Sbjct: 10046597 accatctccacgtcgaagttccacacca 10046570
>dbj|AP005697.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0005C03 Length = 166423 Score = 50.1 bits (25), Expect = 0.004 Identities = 107/135 (79%) Strand = Plus / Plus Query: 96 gcccgtcaaccagctccacatcgaagttccacaccattgncgcgacaatagtattcatct 155 ||||||| |||| |||||| |||||||||||||||| | || | || || ||||||| Sbjct: 99935 gcccgtccaccacctccacgtcgaagttccacaccaccgcggccgcgatggtcttcatct 99994 Query: 156 gcataaatgagatgtccttgccaaggcaaatcctcgggccggagctgaatgccaaaaatt 215 |||| | | |||| |||||| |||| |||||||| |||||| |||| ||||| || | Sbjct: 99995 gcatcacggcgatgctcttgccggggcacatcctcggcccggagttgaacgccaagaact 100054 Query: 216 tgtgagacggnacgt 230 |||| ||||| |||| Sbjct: 100055 tgtgcgacggcacgt 100069 Score = 48.1 bits (24), Expect = 0.015 Identities = 33/36 (91%) Strand = Plus / Plus Query: 96 gcccgtcaaccagctccacatcgaagttccacacca 131 ||||||| |||| |||||| |||||||||||||||| Sbjct: 98126 gcccgtccaccacctccacgtcgaagttccacacca 98161
>ref|XM_481109.1| Oryza sativa (japonica cultivar-group), mRNA Length = 195 Score = 48.1 bits (24), Expect = 0.015 Identities = 33/36 (91%) Strand = Plus / Minus Query: 96 gcccgtcaaccagctccacatcgaagttccacacca 131 ||||||| |||| |||||| |||||||||||||||| Sbjct: 137 gcccgtccaccacctccacgtcgaagttccacacca 102
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.92 Identities = 27/29 (93%) Strand = Plus / Plus Query: 169 gtccttgccaaggcaaatcctcgggccgg 197 ||||||||| |||||||||||||| |||| Sbjct: 27082205 gtccttgccgaggcaaatcctcggcccgg 27082233
>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1486_E07 Length = 110494 Score = 42.1 bits (21), Expect = 0.92 Identities = 27/29 (93%) Strand = Plus / Plus Query: 169 gtccttgccaaggcaaatcctcgggccgg 197 ||||||||| |||||||||||||| |||| Sbjct: 53854 gtccttgccgaggcaaatcctcggcccgg 53882
>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461B08 Length = 153743 Score = 42.1 bits (21), Expect = 0.92 Identities = 27/29 (93%) Strand = Plus / Plus Query: 169 gtccttgccaaggcaaatcctcgggccgg 197 ||||||||| |||||||||||||| |||| Sbjct: 135407 gtccttgccgaggcaaatcctcggcccgg 135435
>dbj|AK069029.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003E06, full insert sequence Length = 2118 Score = 42.1 bits (21), Expect = 0.92 Identities = 27/29 (93%) Strand = Plus / Minus Query: 169 gtccttgccaaggcaaatcctcgggccgg 197 ||||||||| |||||||||||||| |||| Sbjct: 1523 gtccttgccgaggcaaatcctcggcccgg 1495
>gb|AC016582.9| Homo sapiens chromosome 19 clone CTD-2554C21, complete sequence Length = 188712 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 aaatgagatgtccttgccaa 179 |||||||||||||||||||| Sbjct: 33310 aaatgagatgtccttgccaa 33329
>dbj|AP006158.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1127C04 Length = 121441 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 104 accagctccacatcgaagttccacacca 131 |||| |||||| |||||||||||||||| Sbjct: 86499 accatctccacgtcgaagttccacacca 86472
>dbj|AP006064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0023I13 Length = 165911 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 104 accagctccacatcgaagttccacacca 131 |||| |||||| |||||||||||||||| Sbjct: 5943 accatctccacgtcgaagttccacacca 5916
>gb|AC007676.19|AC007676 Homo sapiens, clone RP11-9B17, complete sequence Length = 152138 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 aaatgagatgtccttgccaa 179 |||||||||||||||||||| Sbjct: 102181 aaatgagatgtccttgccaa 102200 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,678,485 Number of Sequences: 3902068 Number of extensions: 1678485 Number of successful extensions: 26757 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26698 Number of HSP's gapped (non-prelim): 59 length of query: 278 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 256 effective length of database: 17,147,199,772 effective search space: 4389683141632 effective search space used: 4389683141632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)