Clone Name | rbasd11p07 |
---|---|
Clone Library Name | barley_pub |
>gb|AY846831.1| Triticum aestivum ribosomal protein S29 mRNA, complete cds Length = 398 Score = 513 bits (259), Expect = e-142 Identities = 326/347 (93%), Gaps = 4/347 (1%) Strand = Plus / Minus Query: 30 ctcaaacagcagtcaccaacatggtttcacggatttgtcactccaattcaaacattaaca 89 |||||||||||||| | ||||||||||||||| |||||||| |||||||||| || | Sbjct: 368 ctcaaacagcagtcgctaacatggtttcacggttttgtcaccaggattcaaacat-aata 310 Query: 90 gtagttcattacatagtttataggataataaagatcggcctcgatgaagcaccgcagttc 149 |||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||| Sbjct: 309 gtagttcattacatagcttataggataa---agatcagcctcgatgaagcaccacagttc 253 Query: 150 gatgataatttcctagtccttgcttcctttgaggtttccattcttaacggtacttgatga 209 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 252 gttgataatttcctagtccttgcttcctttgaggtttccattcttaacggtacttgatga 193 Query: 210 anccgatgtccttggcgttgctgcggaagcactgcctgcagcacatcagcccgtacttgc 269 | || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 agccaatgtccttggcgtcgctgcggaagcactgcctgcagcacatcagcccgtacttgc 133 Query: 270 ggatcaggccatgcgagttgccgcagacacggcaaaccctggatccggggccgnagttct 329 |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct: 132 ggatcaggccatgcgagttgccgcagacacggcaaaccctggatccggcgccgtagttct 73 Query: 330 tggggtgcgagttccagacgttcgagtgtcccatggcggcggcggcg 376 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72 tggggtgcgagttccagacgttcgagtgtcccatggcggcggcggcg 26
>ref|NM_194080.1| Oryza sativa (japonica cultivar-group), mRNA Length = 509 Score = 285 bits (144), Expect = 5e-74 Identities = 172/182 (94%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcaca 254 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct: 201 aacggtacttgatgaagccaatgtccttggcgttgctgcggaagcactgcctgcagcaca 142 Query: 255 tcagcccgtacttgcggatcaggccatgcgagttgccgcagacacggcaaaccctggatc 314 | ||||||||||| ||||||| |||||||| ||||||||| ||||||||||||||||||| Sbjct: 141 tgagcccgtacttccggatcaagccatgcgggttgccgcaaacacggcaaaccctggatc 82 Query: 315 cggggccgnagttcttggggtgcgagttccagacgttcgagtgtcccatggcggcggcgg 374 |||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 81 cggggccgtagttcttggggtgcgagttccacacgttggagtgtcccatggcggcggcgg 22 Query: 375 cg 376 || Sbjct: 21 cg 20
>gb|AY109342.1| Zea mays CL3469_4 mRNA sequence Length = 814 Score = 192 bits (97), Expect = 6e-46 Identities = 149/167 (89%) Strand = Plus / Minus Query: 197 cggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatc 256 |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| Sbjct: 225 cggtacttgatgaagccaatgtccttggcattgctgcggaagcactgcctgcagcacatc 166 Query: 257 agcccgtacttgcggatcaggccatgcgagttgccgcagacacggcaaaccctggatccg 316 ||||||||||| | |||||| ||||| | ||| | ||||||||||| || | ||||||| Sbjct: 165 agcccgtacttcctgatcagtccatgagggttcgcacagacacggcagacgcgggatccg 106 Query: 317 gggccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 || ||| |||||||||||||||||||||||||||| ||||| ||||| Sbjct: 105 ggcccgtagttcttggggtgcgagttccagacgttggagtgccccat 59
>gb|AF457936.1| Zea mays clone cho1c.pk002.j14, mRNA sequence Length = 402 Score = 184 bits (93), Expect = 1e-43 Identities = 148/167 (88%) Strand = Plus / Minus Query: 197 cggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatc 256 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 195 cggtacttgatgaagccaatgtccttggcgttgctgcggaagcactgcctgcagcacatc 136 Query: 257 agcccgtacttgcggatcaggccatgcgagttgccgcagacacggcaaaccctggatccg 316 ||||||||||| | |||||| ||||| | ||| | ||||| ||||| || | ||||||| Sbjct: 135 agcccgtacttcctgatcagtccatgagggttcgcacagacccggcagacgcgggatccg 76 Query: 317 gggccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 || ||| |||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 75 ggcccgtagttcttggggtgcgagttccacacgttggagtgccccat 29
>gb|AY110912.1| Zea mays CL3469_2 mRNA sequence Length = 489 Score = 184 bits (93), Expect = 1e-43 Identities = 146/166 (87%) Strand = Plus / Minus Query: 197 cggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatc 256 |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 257 cggtacttgatgaagccaatgtccttggcgttgctgcggaagcactgtctgcagcacatg 198 Query: 257 agcccgtacttgcggatcaggccatgcgagttgccgcagacacggcaaaccctggatccg 316 ||||||||||| ||||||| ||| | || |||| |||||||||||||| ||||| Sbjct: 197 agcccgtactttcggatcaagccgtnnnnnttagcgcacacacggcaaaccctagatcca 138 Query: 317 gggccgnagttcttggggtgcgagttccagacgttcgagtgtccca 362 |||||| |||||||||||||||||||||| ||||| |||||||||| Sbjct: 137 gggccgtagttcttggggtgcgagttccacacgttggagtgtccca 92
>gb|BT017321.1| Zea mays clone EL01N0319C08.c mRNA sequence Length = 424 Score = 174 bits (88), Expect = 1e-40 Identities = 146/166 (87%) Strand = Plus / Minus Query: 198 ggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatca 257 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 ggtacttgatgaagccaatgtccttggcgttgctgcggaagcactgcctgcagcacatca 149 Query: 258 gcccgtacttgcggatcaggccatgcgagttgccgcagacacggcaaaccctggatccgg 317 ||||||||| | |||||| ||||| | ||| | ||||| ||||| || | |||||||| Sbjct: 148 ccccgtacttcctgatcagtccatgagggttcgcacagacccggcagacgcgggatccgg 89 Query: 318 ggccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 | ||| |||||||||||||||||||||| ||||| ||||| ||||| Sbjct: 88 gcccgtagttcttggggtgcgagttccacacgttggagtgccccat 43
>dbj|AK059123.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-F08, full insert sequence Length = 457 Score = 161 bits (81), Expect = 2e-36 Identities = 145/167 (86%) Strand = Plus / Minus Query: 197 cggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatc 256 |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 254 cggtacttgatgaagccgatgtccttggcgttgctgcggaagcactgtctgcagcacatg 195 Query: 257 agcccgtacttgcggatcaggccatgcgagttgccgcagacacggcaaaccctggatccg 316 ||||||||||| | |||||| ||||| | ||| ||||| || ||||| || | ||| || Sbjct: 194 agcccgtacttcctgatcagtccatgagggttcccgcacacccggcagacgcgggagccc 135 Query: 317 gggccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 || ||| ||||||||||||| |||||||| ||||| ||||| ||||| Sbjct: 134 ggcccgtagttcttggggtgggagttccacacgttggagtgccccat 88
>gb|AY109560.1| Zea mays CL3469_8 mRNA sequence Length = 586 Score = 151 bits (76), Expect = 2e-33 Identities = 144/169 (85%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcaca 254 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct: 201 aacggtacttgatgaaaccaatgtccttggcgttgctgcggaagcactgcctgcagcaca 142 Query: 255 tcagcccgtacttgcggatcaggccatgcgagttgccgcagacacggcaaaccctggatc 314 | ||||||||||| | |||||| || | || ||||||| ||||| || | ||| | Sbjct: 141 tgagcccgtacttcctgatcagaccgtnnnnnttcgcgcagacccggcagacgcgggagc 82 Query: 315 cggggccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 | |||||| ||||||| |||||||||||||| ||||| ||||| ||||| Sbjct: 81 cagggccgtagttcttagggtgcgagttccaaacgttggagtggcccat 33
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 147 bits (74), Expect = 3e-32 Identities = 94/101 (93%) Strand = Plus / Plus Query: 202 cttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatcagccc 261 ||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 31739005 cttgatgaagccaatgtccttggcgttgctgcggaagcactgcctgcagcacatgagccc 31739064 Query: 262 gtacttgcggatcaggccatgcgagttgccgcagacacggc 302 |||||| ||||||| |||||||| ||||||||| ||||||| Sbjct: 31739065 gtacttccggatcaagccatgcgggttgccgcaaacacggc 31739105 Score = 127 bits (64), Expect = 3e-26 Identities = 72/75 (96%) Strand = Plus / Plus Query: 302 caaaccctggatccggggccgnagttcttggggtgcgagttccagacgttcgagtgtccc 361 ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| Sbjct: 31739363 caaaccctggatccggggccgtagttcttggggtgcgagttccacacgttggagtgtccc 31739422 Query: 362 atggcggcggcggcg 376 ||||||||||||||| Sbjct: 31739423 atggcggcggcggcg 31739437
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence Length = 134496 Score = 147 bits (74), Expect = 3e-32 Identities = 94/101 (93%) Strand = Plus / Plus Query: 202 cttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatcagccc 261 ||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 64231 cttgatgaagccaatgtccttggcgttgctgcggaagcactgcctgcagcacatgagccc 64290 Query: 262 gtacttgcggatcaggccatgcgagttgccgcagacacggc 302 |||||| ||||||| |||||||| ||||||||| ||||||| Sbjct: 64291 gtacttccggatcaagccatgcgggttgccgcaaacacggc 64331 Score = 127 bits (64), Expect = 3e-26 Identities = 72/75 (96%) Strand = Plus / Plus Query: 302 caaaccctggatccggggccgnagttcttggggtgcgagttccagacgttcgagtgtccc 361 ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| Sbjct: 64589 caaaccctggatccggggccgtagttcttggggtgcgagttccacacgttggagtgtccc 64648 Query: 362 atggcggcggcggcg 376 ||||||||||||||| Sbjct: 64649 atggcggcggcggcg 64663
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 147 bits (74), Expect = 3e-32 Identities = 94/101 (93%) Strand = Plus / Plus Query: 202 cttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatcagccc 261 ||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 31829521 cttgatgaagccaatgtccttggcgttgctgcggaagcactgcctgcagcacatgagccc 31829580 Query: 262 gtacttgcggatcaggccatgcgagttgccgcagacacggc 302 |||||| ||||||| |||||||| ||||||||| ||||||| Sbjct: 31829581 gtacttccggatcaagccatgcgggttgccgcaaacacggc 31829621 Score = 127 bits (64), Expect = 3e-26 Identities = 72/75 (96%) Strand = Plus / Plus Query: 302 caaaccctggatccggggccgnagttcttggggtgcgagttccagacgttcgagtgtccc 361 ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| Sbjct: 31829879 caaaccctggatccggggccgtagttcttggggtgcgagttccacacgttggagtgtccc 31829938 Query: 362 atggcggcggcggcg 376 ||||||||||||||| Sbjct: 31829939 atggcggcggcggcg 31829953
>gb|DQ083212.1| Oryza sativa (indica cultivar-group) clone 7S11G34 mRNA sequence Length = 346 Score = 115 bits (58), Expect = 1e-22 Identities = 66/69 (95%) Strand = Plus / Minus Query: 197 cggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatc 256 |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 69 cggtacttgatgaagccgatgtccttggcgttgctgcggaagcactgtctgcagcacatg 10 Query: 257 agcccgtac 265 ||||||||| Sbjct: 9 agcccgtac 1
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 115 bits (58), Expect = 1e-22 Identities = 75/81 (92%) Strand = Plus / Minus Query: 202 cttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatcagccc 261 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 19578218 cttgatgaagccgatgtccttggcgttgctgcggaagcactgtctgcagcacatgagccc 19578159 Query: 262 gtacttgcggatcaggccatg 282 |||||| | |||||| ||||| Sbjct: 19578158 gtacttcctgatcagtccatg 19578138 Score = 50.1 bits (25), Expect = 0.005 Identities = 39/44 (88%) Strand = Plus / Minus Query: 320 ccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 ||| ||||||||||||| |||||||| ||||| ||||| ||||| Sbjct: 19577550 ccgtagttcttggggtgggagttccacacgttggagtgccccat 19577507
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 115 bits (58), Expect = 1e-22 Identities = 75/81 (92%) Strand = Plus / Minus Query: 202 cttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatcagccc 261 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 19504431 cttgatgaagccgatgtccttggcgttgctgcggaagcactgtctgcagcacatgagccc 19504372 Query: 262 gtacttgcggatcaggccatg 282 |||||| | |||||| ||||| Sbjct: 19504371 gtacttcctgatcagtccatg 19504351 Score = 50.1 bits (25), Expect = 0.005 Identities = 39/44 (88%) Strand = Plus / Minus Query: 320 ccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 ||| ||||||||||||| |||||||| ||||| ||||| ||||| Sbjct: 19503763 ccgtagttcttggggtgggagttccacacgttggagtgccccat 19503720
>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144596 Score = 115 bits (58), Expect = 1e-22 Identities = 75/81 (92%) Strand = Plus / Minus Query: 202 cttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatcagccc 261 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 110399 cttgatgaagccgatgtccttggcgttgctgcggaagcactgtctgcagcacatgagccc 110340 Query: 262 gtacttgcggatcaggccatg 282 |||||| | |||||| ||||| Sbjct: 110339 gtacttcctgatcagtccatg 110319 Score = 50.1 bits (25), Expect = 0.005 Identities = 39/44 (88%) Strand = Plus / Minus Query: 320 ccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 ||| ||||||||||||| |||||||| ||||| ||||| ||||| Sbjct: 109731 ccgtagttcttggggtgggagttccacacgttggagtgccccat 109688
>gb|AC118346.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0039F06, complete sequence Length = 133022 Score = 107 bits (54), Expect = 3e-20 Identities = 89/101 (88%) Strand = Plus / Plus Query: 202 cttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatcagccc 261 ||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 86375 cttgatgaagccaatatccttggcgttgctgcggaagcactgcctgcagcacatgagccc 86434 Query: 262 gtacttgcggatcaggccatgcgagttgccgcagacacggc 302 ||||| | |||||| ||||| | ||| |||||||| |||| Sbjct: 86435 atacttcctgatcagcccatgagggttcccgcagacccggc 86475 Score = 54.0 bits (27), Expect = 3e-04 Identities = 44/50 (88%) Strand = Plus / Plus Query: 314 ccggggccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 ||||| ||| ||||||||||||| |||||||| ||||| ||||| ||||| Sbjct: 87330 ccgggcccgtagttcttggggtgggagttccacacgttggagtggcccat 87379
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 107 bits (54), Expect = 3e-20 Identities = 89/101 (88%) Strand = Plus / Minus Query: 202 cttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatcagccc 261 ||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 24119051 cttgatgaagccaatatccttggcgttgctgcggaagcactgcctgcagcacatgagccc 24118992 Query: 262 gtacttgcggatcaggccatgcgagttgccgcagacacggc 302 ||||| | |||||| ||||| | ||| |||||||| |||| Sbjct: 24118991 atacttcctgatcagcccatgagggttcccgcagacccggc 24118951 Score = 54.0 bits (27), Expect = 3e-04 Identities = 44/50 (88%) Strand = Plus / Minus Query: 314 ccggggccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 ||||| ||| ||||||||||||| |||||||| ||||| ||||| ||||| Sbjct: 24118096 ccgggcccgtagttcttggggtgggagttccacacgttggagtggcccat 24118047
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 107 bits (54), Expect = 3e-20 Identities = 89/101 (88%) Strand = Plus / Minus Query: 202 cttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatcagccc 261 ||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 24430720 cttgatgaagccaatatccttggcgttgctgcggaagcactgcctgcagcacatgagccc 24430661 Query: 262 gtacttgcggatcaggccatgcgagttgccgcagacacggc 302 ||||| | |||||| ||||| | ||| |||||||| |||| Sbjct: 24430660 atacttcctgatcagcccatgagggttcccgcagacccggc 24430620 Score = 54.0 bits (27), Expect = 3e-04 Identities = 44/50 (88%) Strand = Plus / Minus Query: 314 ccggggccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 ||||| ||| ||||||||||||| |||||||| ||||| ||||| ||||| Sbjct: 24429765 ccgggcccgtagttcttggggtgggagttccacacgttggagtggcccat 24429716
>gb|AY310769.1| Nicotiana benthamiana clone 8-039 unknown mRNA Length = 392 Score = 95.6 bits (48), Expect = 1e-16 Identities = 59/63 (93%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| Sbjct: 228 ttaacggtacttgatgaagccagtttccttggcgttgctgcggaagcactgcctgcagca 169 Query: 253 cat 255 ||| Sbjct: 168 cat 166 Score = 40.1 bits (20), Expect = 5.0 Identities = 40/47 (85%) Strand = Plus / Minus Query: 317 gggccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 |||||| ||||||||||||| | ||||||| ||| ||||| ||||| Sbjct: 104 gggccgtagttcttggggtgagcattccagatgttagagtgacccat 58
>ref|NM_114269.2| Arabidopsis thaliana structural constituent of ribosome AT3G44010 mRNA, complete cds Length = 483 Score = 79.8 bits (40), Expect = 6e-12 Identities = 93/111 (83%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| || || ||||| |||||||| ||||| ||||| |||||||| Sbjct: 239 ttaacggtacttaatgaatccaatctccttagcgttgctacggaaacactgtctgcagca 180 Query: 253 catcagcccgtacttgcggatcaggccatgcgagttgccgcagacacggca 303 ||| || ||||| |||||||| || |||||||| ||||| |||||||| Sbjct: 179 gttcaaaccatacttccggatcagaccgtgcgagttcccgcacacacggca 129
>emb|BX826239.1|CNS0A7QD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL93ZC06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 360 Score = 79.8 bits (40), Expect = 6e-12 Identities = 93/111 (83%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| || || ||||| |||||||| ||||| ||||| |||||||| Sbjct: 191 ttaacggtacttaatgaatccaatctccttagcgttgctacggaaacactgtctgcagca 132 Query: 253 catcagcccgtacttgcggatcaggccatgcgagttgccgcagacacggca 303 ||| || ||||| |||||||| || |||||||| ||||| |||||||| Sbjct: 131 gttcaaaccatacttccggatcagaccgtgcgagttcccgcacacacggca 81
>emb|BX825142.1|CNS0A7PE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL15ZD07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 459 Score = 79.8 bits (40), Expect = 6e-12 Identities = 93/111 (83%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| || || ||||| |||||||| ||||| ||||| |||||||| Sbjct: 215 ttaacggtacttaatgaatccaatctccttagcgttgctacggaaacactgtctgcagca 156 Query: 253 catcagcccgtacttgcggatcaggccatgcgagttgccgcagacacggca 303 ||| || ||||| |||||||| || |||||||| ||||| |||||||| Sbjct: 155 gttcaaaccatacttccggatcagaccgtgcgagttcccgcacacacggca 105
>emb|BX824534.1|CNS0A7RP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH54ZG05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 394 Score = 79.8 bits (40), Expect = 6e-12 Identities = 93/111 (83%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| || || ||||| |||||||| ||||| ||||| |||||||| Sbjct: 224 ttaacggtacttaatgaatccaatctccttagcgttgctacggaaacactgtctgcagca 165 Query: 253 catcagcccgtacttgcggatcaggccatgcgagttgccgcagacacggca 303 ||| || ||||| |||||||| || |||||||| ||||| |||||||| Sbjct: 164 gttcaaaccatacttccggatcagaccgtgcgagttcccgcacacacggca 114
>gb|BT004344.1| Arabidopsis thaliana clone U20117 putative ribosomal protein S29 (At3g44010) mRNA, complete cds Length = 202 Score = 79.8 bits (40), Expect = 6e-12 Identities = 93/111 (83%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| || || ||||| |||||||| ||||| ||||| |||||||| Sbjct: 171 ttaacggtacttaatgaatccaatctccttagcgttgctacggaaacactgtctgcagca 112 Query: 253 catcagcccgtacttgcggatcaggccatgcgagttgccgcagacacggca 303 ||| || ||||| |||||||| || |||||||| ||||| |||||||| Sbjct: 111 gttcaaaccatacttccggatcagaccgtgcgagttcccgcacacacggca 61
>gb|AY086767.1| Arabidopsis thaliana clone 2749 mRNA, complete sequence Length = 482 Score = 79.8 bits (40), Expect = 6e-12 Identities = 93/111 (83%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| || || ||||| |||||||| ||||| ||||| |||||||| Sbjct: 239 ttaacggtacttaatgaatccaatctccttagcgttgctacggaaacactgtctgcagca 180 Query: 253 catcagcccgtacttgcggatcaggccatgcgagttgccgcagacacggca 303 ||| || ||||| |||||||| || |||||||| ||||| |||||||| Sbjct: 179 gttcaaaccatacttccggatcagaccgtgcgagttcccgcacacacggca 129
>gb|BT002766.1| Arabidopsis thaliana clone RAFL15-04-A21 (R20117) putative ribosomal protein S29 (At3g44010) mRNA, complete cds Length = 421 Score = 79.8 bits (40), Expect = 6e-12 Identities = 93/111 (83%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| || || ||||| |||||||| ||||| ||||| |||||||| Sbjct: 239 ttaacggtacttaatgaatccaatctccttagcgttgctacggaaacactgtctgcagca 180 Query: 253 catcagcccgtacttgcggatcaggccatgcgagttgccgcagacacggca 303 ||| || ||||| |||||||| || |||||||| ||||| |||||||| Sbjct: 179 gttcaaaccatacttccggatcagaccgtgcgagttcccgcacacacggca 129
>emb|Y16127.1|LES16127 Lycopersicon esculentum mRNA for hypothetical protein Length = 474 Score = 79.8 bits (40), Expect = 6e-12 Identities = 57/63 (90%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||||||||| || || |||||||| ||||||||||||||||| ||||| || Sbjct: 224 ttaacggtacttgatgaagccaatttccttggcattgctgcggaagcactgtctgcaaca 165 Query: 253 cat 255 ||| Sbjct: 164 cat 162
>gb|AY389605.1| Hyacinthus orientalis ribosomal protein S29 (RPS29) mRNA, partial cds Length = 481 Score = 75.8 bits (38), Expect = 9e-11 Identities = 136/168 (80%), Gaps = 1/168 (0%) Strand = Plus / Minus Query: 197 cggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatc 256 |||||||| || || || || |||||||| ||||| ||||||||||||||||||||||| Sbjct: 220 cggtacttaataaagccaatttccttggcattgctacggaagcactgcctgcagcacata 161 Query: 257 agcccgtacttgcggatcaggccatgcgagttgccgcagacacggcaaaccctggatccg 316 || || ||||| || |||| ||||||| ||||| || || |||||| | ||||| Sbjct: 160 agtccatacttccgaatcaaaccatgcggattgccacaaactcggcaagttcgagatcct 101 Query: 317 gggccgnag-ttcttggggtgcgagttccagacgttcgagtgtcccat 363 |||||| || | |||||| ||||| ||||| ||||| ||||||||||| Sbjct: 100 gggccgtagctgcttgggatgcgaattccaaacgttggagtgtcccat 53
>ref|NM_114266.1| Arabidopsis thaliana structural constituent of ribosome AT3G43980 mRNA, complete cds Length = 400 Score = 73.8 bits (37), Expect = 4e-10 Identities = 137/171 (80%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct: 247 ttaacggtacttaatgaatccgatctccttggcgttactgcggaaacactgtctgcagca 188 Query: 253 catcagcccgtacttgcggatcaggccatgcgagttgccgcagacacggcaaaccctgga 312 ||| || ||||| | ||| || || || ||||| ||||| |||||||| | | || Sbjct: 187 attcaaaccatacttcctgataagcccgtgtgagttcccgcacacacggcataaacgaga 128 Query: 313 tccggggccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 ||| || ||| | ||||| || || ||||||||||| || ||||| ||||| Sbjct: 127 tccaggaccgtacttcttcggatgagagttccagacattagagtgacccat 77
>gb|AF349528.1| Arabidopsis thaliana putative ribosomal S29 protein (At3g43980) mRNA, complete cds Length = 221 Score = 73.8 bits (37), Expect = 4e-10 Identities = 137/171 (80%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct: 171 ttaacggtacttaatgaatccgatctccttggcgttactgcggaaacactgtctgcagca 112 Query: 253 catcagcccgtacttgcggatcaggccatgcgagttgccgcagacacggcaaaccctgga 312 ||| || ||||| | ||| || || || ||||| ||||| |||||||| | | || Sbjct: 111 attcaaaccatacttcctgataagcccgtgtgagttcccgcacacacggcataaacgaga 52 Query: 313 tccggggccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 ||| || ||| | ||||| || || ||||||||||| || ||||| ||||| Sbjct: 51 tccaggaccgtacttcttcggatgagagttccagacattagagtgacccat 1
>gb|AF326888.1| Arabidopsis thaliana putative ribosomal S29 protein (At3g43980) mRNA, complete cds Length = 536 Score = 73.8 bits (37), Expect = 4e-10 Identities = 137/171 (80%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct: 229 ttaacggtacttaatgaatccgatctccttggcgttactgcggaaacactgtctgcagca 170 Query: 253 catcagcccgtacttgcggatcaggccatgcgagttgccgcagacacggcaaaccctgga 312 ||| || ||||| | ||| || || || ||||| ||||| |||||||| | | || Sbjct: 169 attcaaaccatacttcctgataagcccgtgtgagttcccgcacacacggcataaacgaga 110 Query: 313 tccggggccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 ||| || ||| | ||||| || || ||||||||||| || ||||| ||||| Sbjct: 109 tccaggaccgtacttcttcggatgagagttccagacattagagtgacccat 59
>gb|AY129480.1| Arabidopsis thaliana AT3g43980/T15B3_120 mRNA, complete cds Length = 171 Score = 73.8 bits (37), Expect = 4e-10 Identities = 137/171 (80%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct: 171 ttaacggtacttaatgaatccgatctccttggcgttactgcggaaacactgtctgcagca 112 Query: 253 catcagcccgtacttgcggatcaggccatgcgagttgccgcagacacggcaaaccctgga 312 ||| || ||||| | ||| || || || ||||| ||||| |||||||| | | || Sbjct: 111 attcaaaccatacttcctgataagcccgtgtgagttcccgcacacacggcataaacgaga 52 Query: 313 tccggggccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 ||| || ||| | ||||| || || ||||||||||| || ||||| ||||| Sbjct: 51 tccaggaccgtacttcttcggatgagagttccagacattagagtgacccat 1
>gb|AF361851.1| Arabidopsis thaliana AT3g43980/T15B3_120 mRNA, complete cds Length = 379 Score = 73.8 bits (37), Expect = 4e-10 Identities = 137/171 (80%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct: 229 ttaacggtacttaatgaatccgatctccttggcgttactgcggaaacactgtctgcagca 170 Query: 253 catcagcccgtacttgcggatcaggccatgcgagttgccgcagacacggcaaaccctgga 312 ||| || ||||| | ||| || || || ||||| ||||| |||||||| | | || Sbjct: 169 attcaaaccatacttcctgataagcccgtgtgagttcccgcacacacggcataaacgaga 110 Query: 313 tccggggccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 ||| || ||| | ||||| || || ||||||||||| || ||||| ||||| Sbjct: 109 tccaggaccgtacttcttcggatgagagttccagacattagagtgacccat 59
>gb|AF324695.2|AF324695 Arabidopsis thaliana AT3g43980 (AT3g43980/T15B3_120) mRNA, complete cds Length = 483 Score = 73.8 bits (37), Expect = 4e-10 Identities = 137/171 (80%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct: 229 ttaacggtacttaatgaatccgatctccttggcgttactgcggaaacactgtctgcagca 170 Query: 253 catcagcccgtacttgcggatcaggccatgcgagttgccgcagacacggcaaaccctgga 312 ||| || ||||| | ||| || || || ||||| ||||| |||||||| | | || Sbjct: 169 attcaaaccatacttcctgataagcccgtgtgagttcccgcacacacggcataaacgaga 110 Query: 313 tccggggccgnagttcttggggtgcgagttccagacgttcgagtgtcccat 363 ||| || ||| | ||||| || || ||||||||||| || ||||| ||||| Sbjct: 109 tccaggaccgtacttcttcggatgagagttccagacattagagtgacccat 59
>emb|BX822718.1|CNS0A7T6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB5ZC08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 371 Score = 73.8 bits (37), Expect = 4e-10 Identities = 54/60 (90%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct: 202 ttaacggtacttaatgaatccgatctccttggcgttactgcggaaacactgtctgcagca 143
>gb|AY088245.1| Arabidopsis thaliana clone 473 mRNA, complete sequence Length = 401 Score = 73.8 bits (37), Expect = 4e-10 Identities = 54/60 (90%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct: 248 ttaacggtacttaatgaatccgatctccttggcgttactgcggaaacactgtctgcagca 189
>emb|BX825609.1|CNS0A7QE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL48ZG03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 460 Score = 71.9 bits (36), Expect = 1e-09 Identities = 92/111 (82%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| || || ||||| |||||||| ||||| ||||| ||||||| Sbjct: 215 ttaacggtacttaatgaatccaatctccttagcgttgctacggaaacactgtttgcagca 156 Query: 253 catcagcccgtacttgcggatcaggccatgcgagttgccgcagacacggca 303 ||| || ||||| |||||||| || |||||||| ||||| |||||||| Sbjct: 155 gttcaaaccatacttccggatcagaccgtgcgagttcccgcacacacggca 105
>ref|NM_119544.3| Arabidopsis thaliana structural constituent of ribosome AT4G33865 mRNA, complete cds Length = 439 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 251 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 194
>gb|AF325031.2|AF325031 Arabidopsis thaliana AT3g43980 (AT3g43980/T15B3_120) mRNA, complete cds Length = 420 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 248 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 191
>emb|BX841605.1|CNS09YHD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL66ZF11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 358 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 184 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 127
>dbj|AK176861.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds, clone: RAFL25-41-O05 Length = 359 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 212 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 155
>dbj|AK176439.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds, clone: RAFL24-19-N14 Length = 367 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 220 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 163
>dbj|AK176332.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds, clone: RAFL23-32-J11 Length = 385 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 253 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 196
>dbj|AK176322.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds, clone: RAFL23-29-F01 Length = 370 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 220 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 163
>dbj|AK176295.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds, clone: RAFL23-24-M01 Length = 368 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 218 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 161
>dbj|AK176294.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds, clone: RAFL23-24-E02 Length = 370 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 220 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 163
>dbj|AK176060.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds, clone: RAFL22-80-C13 Length = 407 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 220 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 163
>dbj|AK175918.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds, clone: RAFL22-58-A09 Length = 407 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 225 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 168
>dbj|AK175739.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds, clone: RAFL22-28-I01 Length = 407 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 220 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 163
>dbj|AK175283.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds, clone: RAFL21-72-B11 Length = 388 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 220 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 163
>dbj|AK175173.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds, clone: RAFL21-59-B22 Length = 359 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 212 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 155
>dbj|AK175172.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds, clone: RAFL21-59-A02 Length = 370 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 220 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 163
>dbj|AK175152.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds, clone: RAFL21-57-E24 Length = 423 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 236 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 179
>dbj|AK175132.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds, clone: RAFL21-54-P17 Length = 394 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 212 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 155
>dbj|AK118617.1| Arabidopsis thaliana At4g33865 mRNA for putative ribosomal S29 subunit, complete cds, clone: RAFL19-88-C17 Length = 427 Score = 69.9 bits (35), Expect = 6e-09 Identities = 52/58 (89%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 269 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgcagca 212
>emb|BX825823.1|CNS0A6FH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL65ZC02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 412 Score = 65.9 bits (33), Expect = 9e-08 Identities = 53/60 (88%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| ||||| ||||||||||| |||||||| |||| |||||||| Sbjct: 175 ttaacggtacttaatgaatccgatctccttggcgttactgcggaaacactttctgcagca 116
>emb|BX828871.1|CNS0A3J1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL45ZE11 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 382 Score = 61.9 bits (31), Expect = 1e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| ||||||| Sbjct: 206 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtttgcagca 149
>gb|AY086371.1| Arabidopsis thaliana clone 24629 mRNA, complete sequence Length = 423 Score = 61.9 bits (31), Expect = 1e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| | |||||| Sbjct: 251 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtcggcagca 194
>dbj|AK176815.1| Arabidopsis thaliana mRNA for ribosomal S29 subunit, complete cds, clone: RAFL25-36-M09 Length = 496 Score = 61.9 bits (31), Expect = 1e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||| ||||| ||||| |||||||||||||| ||||| ||||| ||| |||| Sbjct: 225 aacggtacttaatgaatccgatttccttggcgttgctacggaaacactgtctgtagca 168
>gb|DQ108688.1| Arabidopsis thaliana clone 107113 mRNA sequence Length = 393 Score = 58.0 bits (29), Expect = 2e-05 Identities = 52/60 (86%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 |||||||||||| ||||| || || ||||| |||||||| ||||| ||||| |||||||| Sbjct: 187 ttaacggtacttaatgaatccaatctccttagcgttgctacggaaacactgtctgcagca 128
>emb|AL163975.1|ATT15B3 Arabidopsis thaliana DNA chromosome 3, BAC clone T15B3 Length = 114656 Score = 56.0 bits (28), Expect = 8e-05 Identities = 42/47 (89%) Strand = Plus / Plus Query: 206 atgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 ||||| ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct: 68323 atgaatccgatctccttggcgttactgcggaaacactgtctgcagca 68369
>emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 80 Length = 192861 Score = 56.0 bits (28), Expect = 8e-05 Identities = 42/47 (89%) Strand = Plus / Minus Query: 206 atgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 ||||| ||||| |||||||||||||| ||||||||||| || ||||| Sbjct: 82516 atgaatccgatttccttggcgttgctacggaagcactgtctacagca 82470 Score = 56.0 bits (28), Expect = 8e-05 Identities = 42/47 (89%) Strand = Plus / Plus Query: 206 atgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 67064 atgaatccgatttccttggcgttgctacggaaacactgtctgcagca 67110
>emb|AL031032.1|ATF17I5 Arabidopsis thaliana DNA chromosome 4, BAC clone F17I5 (ESSA project) Length = 86748 Score = 56.0 bits (28), Expect = 8e-05 Identities = 42/47 (89%) Strand = Plus / Minus Query: 206 atgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 ||||| ||||| |||||||||||||| ||||||||||| || ||||| Sbjct: 33492 atgaatccgatttccttggcgttgctacggaagcactgtctacagca 33446 Score = 56.0 bits (28), Expect = 8e-05 Identities = 42/47 (89%) Strand = Plus / Plus Query: 206 atgaanccgatgtccttggcgttgctgcggaagcactgcctgcagca 252 ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 18040 atgaatccgatttccttggcgttgctacggaaacactgtctgcagca 18086
>emb|BX841514.1|CNS09YHL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB28ZE07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 413 Score = 56.0 bits (28), Expect = 8e-05 Identities = 39/43 (90%) Strand = Plus / Minus Query: 195 aacggtacttgatgaanccgatgtccttggcgttgctgcggaa 237 |||||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 225 aacggtacttaatgaatccgatttccttggcgttgctacggaa 183
>gb|DQ214468.1| Taeniopygia guttata clone 0058P0046G06 40S ribosomal protein S29-like mRNA, complete sequence Length = 386 Score = 54.0 bits (27), Expect = 3e-04 Identities = 65/78 (83%) Strand = Plus / Minus Query: 202 cttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatcagccc 261 ||||||||| |||||||||||||||| |||||||||||||| ||| | ||||| Sbjct: 251 cttgatgaacccgatgtccttggcgtactggcggaagcactgccggcacatgttgagccc 192 Query: 262 gtacttgcggatcaggcc 279 |||||||||||| ||||| Sbjct: 191 gtacttgcggatgaggcc 174
>gb|DQ214467.1| Taeniopygia guttata clone 0064P0002B10 40S ribosomal protein S29-like mRNA, complete sequence Length = 386 Score = 54.0 bits (27), Expect = 3e-04 Identities = 65/78 (83%) Strand = Plus / Minus Query: 202 cttgatgaanccgatgtccttggcgttgctgcggaagcactgcctgcagcacatcagccc 261 ||||||||| |||||||||||||||| |||||||||||||| ||| | ||||| Sbjct: 251 cttgatgaacccgatgtccttggcgtactggcggaagcactgccggcacatgttgagccc 192 Query: 262 gtacttgcggatcaggcc 279 |||||||||||| ||||| Sbjct: 191 gtacttgcggatgaggcc 174
>ref|XM_426478.1| PREDICTED: Gallus gallus similar to ribosomal protein S29 (LOC428924), mRNA Length = 522 Score = 50.1 bits (25), Expect = 0.005 Identities = 39/44 (88%) Strand = Plus / Minus Query: 202 cttgatgaanccgatgtccttggcgttgctgcggaagcactgcc 245 ||||||||| |||||||||||||||| |||||||||||||| Sbjct: 162 cttgatgaagccgatgtccttggcgtactggcggaagcactgcc 119
>emb|BX932172.1| Gallus gallus finished cDNA, clone ChEST468g22 Length = 871 Score = 50.1 bits (25), Expect = 0.005 Identities = 39/44 (88%) Strand = Plus / Minus Query: 202 cttgatgaanccgatgtccttggcgttgctgcggaagcactgcc 245 ||||||||| |||||||||||||||| |||||||||||||| Sbjct: 751 cttgatgaagccgatgtccttggcgtactggcggaagcactgcc 708
>gb|DQ108844.1| Arabidopsis thaliana clone 32764 mRNA sequence Length = 347 Score = 48.1 bits (24), Expect = 0.021 Identities = 44/51 (86%) Strand = Plus / Minus Query: 193 ttaacggtacttgatgaanccgatgtccttggcgttgctgcggaagcactg 243 |||||||||||| ||||| || || ||||| |||||||| ||||| ||||| Sbjct: 182 ttaacggtacttaatgaatccaatctccttagcgttgctacggaaacactg 132
>gb|DQ214470.1| Taeniopygia guttata clone 0058P0004E08 40S ribosomal protein S29-like mRNA, complete sequence Length = 352 Score = 46.1 bits (23), Expect = 0.081 Identities = 25/26 (96%) Strand = Plus / Minus Query: 202 cttgatgaanccgatgtccttggcgt 227 ||||||||| |||||||||||||||| Sbjct: 217 cttgatgaacccgatgtccttggcgt 192
>gb|DQ214469.1| Taeniopygia guttata clone 0058P0009G02 40S ribosomal protein S29-like mRNA, complete sequence Length = 351 Score = 46.1 bits (23), Expect = 0.081 Identities = 25/26 (96%) Strand = Plus / Minus Query: 202 cttgatgaanccgatgtccttggcgt 227 ||||||||| |||||||||||||||| Sbjct: 217 cttgatgaacccgatgtccttggcgt 192
>emb|CR931730.1| Medicago truncatula chromosome 5 clone mth2-17o15, COMPLETE SEQUENCE Length = 89342 Score = 44.1 bits (22), Expect = 0.32 Identities = 34/38 (89%) Strand = Plus / Minus Query: 327 tcttggggtgcgagttccagacgttcgagtgtcccatg 364 |||||||||| ||||||||||| || ||||| |||||| Sbjct: 166 tcttggggtgagagttccagacattggagtgacccatg 129
>emb|Z79602.1|CEK09E9 Caenorhabditis elegans Cosmid K09E9, complete sequence Length = 30098 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 aacagtagttcattacatagt 106 ||||||||||||||||||||| Sbjct: 27625 aacagtagttcattacatagt 27645
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 gcagcacatcagcccgtact 266 |||||||||||||||||||| Sbjct: 515733 gcagcacatcagcccgtact 515752
>emb|AL954251.1| Pan troglodytes chromosome 22 clone PTB-044H21 map 22q22.3, complete sequence Length = 149587 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 cagcagtcaccaacatggtt 55 |||||||||||||||||||| Sbjct: 19261 cagcagtcaccaacatggtt 19242
>emb|AL954250.1| Pan troglodytes chromosome 22 clone RP43-013I15 map 22q22.3, complete sequence Length = 192447 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 cagcagtcaccaacatggtt 55 |||||||||||||||||||| Sbjct: 181383 cagcagtcaccaacatggtt 181364
>gb|AE011988.1| Xanthomonas axonopodis pv. citri str. 306, section 366 of 469 of the complete genome Length = 11904 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 tcaggccatgcgagttgccgcaga 296 |||||||||||| ||||||||||| Sbjct: 3479 tcaggccatgcgggttgccgcaga 3456
>gb|AE012444.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 352 of 460 of the complete genome Length = 12739 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 tcaggccatgcgagttgccgcaga 296 |||||||||||| ||||||||||| Sbjct: 6894 tcaggccatgcgggttgccgcaga 6871
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 tcaggccatgcgagttgccgcaga 296 |||||||||||| ||||||||||| Sbjct: 1073461 tcaggccatgcgggttgccgcaga 1073484
>gb|AC093596.3| Homo sapiens BAC clone RP11-98M12 from 4, complete sequence Length = 152347 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 ttgcttcctttgaggtttccattc 192 |||||||| ||||||||||||||| Sbjct: 109073 ttgcttccattgaggtttccattc 109050
>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete sequence Length = 84361 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 gtcccatggcggcggcggcg 376 |||||||||||||||||||| Sbjct: 32053 gtcccatggcggcggcggcg 32034 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,206,707 Number of Sequences: 3902068 Number of extensions: 3206707 Number of successful extensions: 71988 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71344 Number of HSP's gapped (non-prelim): 637 length of query: 376 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 354 effective length of database: 17,147,199,772 effective search space: 6070108719288 effective search space used: 6070108719288 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)